genome.fa.s6599.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006599.1 Hibiscus syriacus cultivar Beakdansim tig00016187_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72479

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8383--8411	6	5.0	6	95	4	51	65	0	0	34	0.93
24580--24638	31	1.9	31	83	13	77	25	11	3	59	1.48
26249--26469	115	1.9	115	94	0	388	32	9	14	43	1.78
27299--27341	21	2.0	21	100	0	86	41	9	13	34	1.77
29454--29500	13	3.5	13	85	11	60	21	2	4	72	1.12
31255--31334	24	3.3	24	98	0	151	37	15	17	30	1.90
31955--32088	21	6.5	21	77	4	139	40	17	24	17	1.91
31955--32088	41	3.3	41	100	0	268	40	17	24	17	1.91
32074--32171	41	2.4	41	84	0	133	39	21	16	22	1.92
32074--32171	20	4.8	20	70	3	61	39	21	16	22	1.92
32339--32382	22	2.0	22	95	0	79	20	45	15	18	1.85
33983--34027	18	2.5	18	81	0	63	26	42	15	15	1.87
34440--34506	20	3.4	20	81	2	73	38	23	22	14	1.92
34495--34552	14	3.9	14	79	16	71	48	25	17	8	1.75
34479--34569	32	2.8	33	94	3	166	47	23	18	10	1.80
34440--34574	19	7.6	19	71	19	85	42	23	20	12	1.86
34586--34643	14	3.9	14	77	16	62	8	15	25	50	1.73
34581--34659	32	2.4	33	93	2	133	10	17	24	48	1.78
34643--34698	20	2.9	19	86	5	85	16	23	23	37	1.93
34728--34797	25	2.7	26	75	6	79	22	11	12	52	1.71
36716--36764	19	2.6	19	96	0	89	51	16	18	14	1.77
36716--36771	19	2.9	19	86	5	78	51	16	19	12	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36802--36859	20	2.9	20	94	0	98	17	22	22	37	1.93
37919--37972	24	2.2	24	90	0	81	24	16	20	38	1.92
38923--38989	21	3.2	21	68	4	55	19	20	35	23	1.95
38923--39044	42	2.9	41	80	7	111	23	18	35	22	1.96
41048--41107	20	3.0	20	80	7	68	43	18	23	15	1.87
41072--41170	33	3.0	33	89	1	144	39	26	23	11	1.88
41049--41231	19	10.0	19	77	14	170	43	22	21	12	1.85
41142--41231	39	2.3	38	94	1	153	46	22	20	11	1.81
41227--41271	19	2.4	19	88	0	63	8	13	26	51	1.70
41804--41843	20	2.0	20	90	0	62	32	22	27	17	1.96
41812--41856	20	2.2	20	92	0	72	26	20	28	24	1.99
41865--41918	20	2.7	20	97	0	99	25	18	24	31	1.97
41805--41921	61	1.9	61	85	0	162	24	18	23	32	1.97
41805--41939	61	2.2	61	81	2	146	23	20	23	31	1.98
48260--48290	16	1.9	16	93	0	53	38	0	0	61	0.96
57919--57963	20	2.2	20	88	0	63	37	17	15	28	1.91
61215--61252	20	1.9	20	94	0	67	31	34	15	18	1.92
61214--61358	65	2.2	64	81	7	159	31	24	18	25	1.97
68796--68833	20	1.9	20	94	0	67	31	34	15	18	1.92
68879--68986	45	2.4	44	84	7	137	29	24	17	28	1.97

Tables:   1

The End!