Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000066.1 Hibiscus syriacus cultivar Beakdansim tig00000113_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77764
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:6261 original size:37 final size:37
Alignment explanation
Indices: 6205--6276 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
6195 GTTCAACCTG
* *
6205 AGCCTTTAATCGCTTATCTGAACTCTGTAGCCTCTAT
1 AGCCTTTAATCGATCATCTGAACTCTGTAGCCTCTAT
* *
6242 AGCCTTTAATTGATCATCTGATCTCTGTAGCCTCT
1 AGCCTTTAATCGATCATCTGAACTCTGTAGCCTCT
6277 TGGTTTCACC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.39
Consensus pattern (37 bp):
AGCCTTTAATCGATCATCTGAACTCTGTAGCCTCTAT
Found at i:16241 original size:218 final size:222
Alignment explanation
Indices: 15825--16253 Score: 694
Period size: 218 Copynumber: 1.9 Consensus size: 222
15815 TATCTATCCT
*
15825 TTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAATATATTTATTATTATCTTTAGTTAATAT
1 TTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTA-CTTTAGTTAATAT
*
15890 TGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGTA
65 TGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATATTTTGTGTA
*
15955 ATGAAATTATTAAATTAATATTGTAGGGAAAATATGAAACACTATTAAAAAAATTGAAACATAAA
130 ATGAAATTATTAAATTAATATTGTAGGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAA
16020 TTACATAACTTTCAAAAAAGTATATATCA
195 TTACATAACTTT-AAAAAAGTATATATCA
*
16049 TTTT-TAAAAGTGTCCATACTTATTTCACTGTTG-AAACATATTTATTA-TA-TTTGGTTAATAT
1 TTTTATAAAAGTGTCCATACTTATTTCACTG-TGAAAACATATTTATTATTACTTTAGTTAATAT
*
16110 TGTTAAATTTAAATTCTAAAT-ATATTTTATAAAATATC-AAACAATCAAATAATATTTTGTGTA
65 TGTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATATTTTGTGT-
* *
16173 AAT-AAATTATTAAATTAATATTGTAGGTGGAAACATGAAACACTATTAAATAAATTGAAACA-A
129 AATGAAATTATTAAATTAATATTGTAGG-GAAAACATGAAACACTATTAAAAAAATTGAAACATA
16236 AATTACATAACTTTAAAA
193 AATTACATAACTTTAAAA
16254 GCAGTTTTAA
Statistics
Matches: 195, Mismatches: 7, Indels: 13
0.91 0.03 0.06
Matches are distributed among these distances:
217 4 0.02
218 62 0.32
219 51 0.26
220 31 0.16
222 2 0.01
223 39 0.20
224 6 0.03
ACGTcount: A:0.45, C:0.08, G:0.07, T:0.40
Consensus pattern (222 bp):
TTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTACTTTAGTTAATATT
GTTAAATTTAAAATCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATATTTTGTGTAA
TGAAATTATTAAATTAATATTGTAGGGAAAACATGAAACACTATTAAAAAAATTGAAACATAAAT
TACATAACTTTAAAAAAGTATATATCA
Found at i:16362 original size:20 final size:20
Alignment explanation
Indices: 16313--16363 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
16303 CCAAAACGAT
*
16313 ATACAGGTAAAAATATGATA
1 ATACCGGTAAAAATATGATA
* *
16333 AAACCAGTAATAAA-ATGATA
1 ATACCGGTAA-AAATATGATA
16353 ATACCGGTAAA
1 ATACCGGTAAA
16364 TTTAAAAGTG
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.55, C:0.10, G:0.14, T:0.22
Consensus pattern (20 bp):
ATACCGGTAAAAATATGATA
Found at i:16532 original size:17 final size:19
Alignment explanation
Indices: 16494--16535 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
16484 AGGTAAAAAT
16494 ATGATAAAACCGGTTCAAA
1 ATGATAAAACCGGTTCAAA
16513 ATGATAAAACCGG-T-AAA
1 ATGATAAAACCGGTTCAAA
16530 ATGATA
1 ATGATA
16536 CCGGATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 9 0.39
18 1 0.04
19 13 0.57
ACGTcount: A:0.50, C:0.12, G:0.17, T:0.21
Consensus pattern (19 bp):
ATGATAAAACCGGTTCAAA
Found at i:18880 original size:32 final size:32
Alignment explanation
Indices: 18818--18881 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 32
18808 AAATAGATGG
* *
18818 AGTGGTGAAAGAAGTAGATGTTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTTTGAAGGGTGA
* *
18850 AGTGGTGAAAGAAGTTGGGGTGTT-AAGGGTGA
1 AGTGGTGAAAGAAGTAGAGGT-TTGAAGGGTGA
18882 TATTAAGATG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 25 0.93
33 2 0.07
ACGTcount: A:0.30, C:0.00, G:0.45, T:0.25
Consensus pattern (32 bp):
AGTGGTGAAAGAAGTAGAGGTTTGAAGGGTGA
Found at i:20682 original size:18 final size:18
Alignment explanation
Indices: 20659--20702 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
20649 TAAATGGGGT
20659 TAATTTTTATAAGATTTA
1 TAATTTTTATAAGATTTA
*
20677 TAATTTTGTATACGATTTA
1 TAATTTT-TATAAGATTTA
20696 T-ATTTTT
1 TAATTTTT
20703 GTATGTGAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 1 0.04
18 12 0.50
19 11 0.46
ACGTcount: A:0.32, C:0.02, G:0.07, T:0.59
Consensus pattern (18 bp):
TAATTTTTATAAGATTTA
Found at i:20693 original size:19 final size:19
Alignment explanation
Indices: 20659--20706 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
20649 TAAATGGGGT
20659 TAATTTT-TATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
20677 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
*
20696 TATTTTTGTAT
1 TAATTTTGTAT
20707 GTGAATATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 7 0.26
19 20 0.74
ACGTcount: A:0.31, C:0.02, G:0.08, T:0.58
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:21590 original size:199 final size:198
Alignment explanation
Indices: 20824--21784 Score: 1710
Period size: 199 Copynumber: 4.9 Consensus size: 198
20814 CAATATGGCC
* * *
20824 AACAGGGTGCACCCATAAAGTGTCGATCCATATA-AAAAAGTGTCAAT-CCAAAAACATCGAAAA
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG-AAC
*
20887 CCAAAAGTATAATGTAATATGTAA-TTTTCAATCTAACCGGTAC-ATGTCTACCGG-TTTATGAG
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAT-TATACCGGTTTTATGAG
20949 AGAATATGTCTAAATAATGTGTCGACACT-A-ATAGTTTGTGTCGATATTTTTTTCCAGAATGAA
129 AGAATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAA
21012 TGGAA
194 TGGAA
*
21017 AACAGTGTGCACCCATAAAGTGTCGATCC--ATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
*
21080 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACAGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
*
21145 AATATGTATAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATG
21210 GAA
196 GAA
21213 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
21278 CAAAAGTAT-ATGTAATATGTAA-TTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
21341 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTT-CCAGAATGAAT
21406 GGAA
195 GGAA
21410 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
*
21475 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACAGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
*
21540 AATATGTCTAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTT-TTCCAGAATGAAT
21605 GGAA
195 GGAA
21609 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
21674 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
* *
21739 AATATGTATAAATAATGTGTCGACACTAATATATTTTGTGTCGATA
131 AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATA
21785 CTAATTTAAA
Statistics
Matches: 739, Mismatches: 16, Indels: 20
0.95 0.02 0.03
Matches are distributed among these distances:
191 3 0.00
192 38 0.05
193 64 0.09
194 38 0.05
195 1 0.00
196 158 0.21
197 102 0.14
198 56 0.08
199 277 0.37
200 2 0.00
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.31
Consensus pattern (198 bp):
AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAATTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTAATATAGTTTGTGTCGATATTTTTTTCCAGAATGAATG
GAA
Found at i:21771 original size:23 final size:23
Alignment explanation
Indices: 21745--21796 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 23
21735 AGAGAATATG
21745 TATAAATAATGTGTCGACACTAA
1 TATAAATAATGTGTCGACACTAA
** *
21768 TAT--ATTTTGTGTCGATACTAA
1 TATAAATAATGTGTCGACACTAA
*
21789 TTTAAATA
1 TATAAATA
21797 TCAAGTGTTT
Statistics
Matches: 22, Mismatches: 5, Indels: 4
0.71 0.16 0.13
Matches are distributed among these distances:
21 17 0.77
23 5 0.23
ACGTcount: A:0.38, C:0.10, G:0.12, T:0.40
Consensus pattern (23 bp):
TATAAATAATGTGTCGACACTAA
Found at i:23261 original size:3 final size:3
Alignment explanation
Indices: 23253--23337 Score: 89
Period size: 3 Copynumber: 28.3 Consensus size: 3
23243 AAGATGAAGC
* * * * * * * *
23253 TGA TGA TGA AGA TGA CGA TGA TGA TGA CGA TGA AGC TGG CGA TGA AGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
*
23301 TGA TGA CGA TGA TGA TGA TGA TGA TGA TGA TGA TGA T
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA T
23338 CCAAACAAGT
Statistics
Matches: 65, Mismatches: 17, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.34, C:0.06, G:0.34, T:0.26
Consensus pattern (3 bp):
TGA
Found at i:23263 original size:18 final size:18
Alignment explanation
Indices: 23242--23333 Score: 87
Period size: 18 Copynumber: 5.1 Consensus size: 18
23232 AGCGGTCGCA
23242 GAAGATGAAGCTGATGAT
1 GAAGATGAAGCTGATGAT
* *
23260 GAAGATGACGATGATGAT
1 GAAGATGAAGCTGATGAT
* **
23278 GACGATGAAGCTGGCGAT
1 GAAGATGAAGCTGATGAT
*
23296 GAAGATGATGAC-GATGAT
1 GAAGATGAAG-CTGATGAT
* * *
23314 GATGATGATGATGATGAT
1 GAAGATGAAGCTGATGAT
23332 GA
1 GA
23334 TGATCCAAAC
Statistics
Matches: 59, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
18 58 0.98
19 1 0.02
ACGTcount: A:0.36, C:0.07, G:0.35, T:0.23
Consensus pattern (18 bp):
GAAGATGAAGCTGATGAT
Found at i:23297 original size:36 final size:36
Alignment explanation
Indices: 23245--23321 Score: 109
Period size: 36 Copynumber: 2.1 Consensus size: 36
23235 GGTCGCAGAA
* *
23245 GATGAAGCTGATGATGAAGATGACGATGATGATGAC
1 GATGAAGCTGACGATGAAGATGACGACGATGATGAC
* * *
23281 GATGAAGCTGGCGATGAAGATGATGACGATGATGAT
1 GATGAAGCTGACGATGAAGATGACGACGATGATGAC
23317 GATGA
1 GATGA
23322 TGATGATGAT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.35, C:0.08, G:0.35, T:0.22
Consensus pattern (36 bp):
GATGAAGCTGACGATGAAGATGACGACGATGATGAC
Found at i:25134 original size:183 final size:183
Alignment explanation
Indices: 24827--25501 Score: 1210
Period size: 183 Copynumber: 3.7 Consensus size: 183
24817 GCAATGCTAT
*
24827 CGGTATAAATATACCGG-TTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATCTT
1 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
* *
24891 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATATGTCGATAC-ATTGTTAAAAAGTGTCGAC
66 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACGATT-TAAAAAAGTGTCGAC
24955 ATTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTAATATAAC
130 ATTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTAATATAAC
*
25009 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACAATTTTTAATATT
1 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
*
25074 GTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACGATTTAAAAAAGTGTCGACA
66 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACGATTTAAAAAAGTGTCGACA
25139 TTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTAATATAAC
131 TTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTAATATAAC
25192 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
1 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
* *
25257 GTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACGATTTAAAAAAGTATCGACA
66 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACGATTTAAAAAAGTGTCGACA
* * *
25322 TTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTTTAATATAAC
131 TTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTAATATAAC
* *
25375 CGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTATAATATT
1 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
*
25440 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCG
66 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACGATTTAAAAAAGTGTCG
25502 GTAATTTTAA
Statistics
Matches: 476, Mismatches: 15, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
182 17 0.04
183 456 0.96
184 3 0.01
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.34
Consensus pattern (183 bp):
CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACGATTTAAAAAAGTGTCGACA
TTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTAATATAAC
Found at i:27999 original size:25 final size:25
Alignment explanation
Indices: 27971--28035 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
27961 TTATCATTAA
27971 ATTTAGGTATGTACAATAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
****
27996 ATTTAGGTATGTTTGTTAACTACAT
1 ATTTAGGTATGTACAATAACTACAT
*
28021 ATTTAGGTATATACA
1 ATTTAGGTATGTACA
28036 TCTTTTGAGT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (25 bp):
ATTTAGGTATGTACAATAACTACAT
Found at i:28413 original size:23 final size:23
Alignment explanation
Indices: 28382--28530 Score: 217
Period size: 23 Copynumber: 6.5 Consensus size: 23
28372 ATAGGTAAAC
*
28382 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
28405 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
28428 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
28451 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
28474 ATATAATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
28497 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
28520 ATATATTGTAA
1 ATATAATGTAA
28531 AGTATCTATC
Statistics
Matches: 112, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 112 1.00
ACGTcount: A:0.35, C:0.05, G:0.19, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:28441 original size:46 final size:46
Alignment explanation
Indices: 28382--28530 Score: 271
Period size: 46 Copynumber: 3.2 Consensus size: 46
28372 ATAGGTAAAC
*
28382 ATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTT
*
28428 ATATAATGTAATAGGTAGTGCTTATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTT
28474 ATATAATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTT
*
28520 ATATATTGTAA
1 ATATAATGTAA
28531 AGTATCTATC
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 99 1.00
ACGTcount: A:0.35, C:0.05, G:0.19, T:0.40
Consensus pattern (46 bp):
ATATAATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTT
Found at i:28974 original size:18 final size:18
Alignment explanation
Indices: 28953--28989 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
28943 GTAATTGGAG
28953 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
28971 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
28989 T
1 T
28990 ATATATTCGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:29301 original size:39 final size:39
Alignment explanation
Indices: 29248--29330 Score: 139
Period size: 39 Copynumber: 2.1 Consensus size: 39
29238 ATGCTCATCG
*
29248 AAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAAATCA
1 AAATCCAAAGCTCATATGATGCCAAGCAAAAGGAAATCA
* *
29287 AAATTCAAATCTCATATGATGCCAAGCAAAAGGAAATCA
1 AAATCCAAAGCTCATATGATGCCAAGCAAAAGGAAATCA
29326 AAATC
1 AAATC
29331 TACAACTTGA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.48, C:0.19, G:0.14, T:0.18
Consensus pattern (39 bp):
AAATCCAAAGCTCATATGATGCCAAGCAAAAGGAAATCA
Found at i:29782 original size:23 final size:23
Alignment explanation
Indices: 29751--29823 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
29741 ATAGGTAAAA
*
29751 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
29774 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
29797 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
29820 ATAT
1 ATAT
29824 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:30211 original size:23 final size:23
Alignment explanation
Indices: 30180--30243 Score: 101
Period size: 23 Copynumber: 2.8 Consensus size: 23
30170 ATAGGTAAAA
*
30180 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
30203 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
30226 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
30244 TGGTTATAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.36, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:30257 original size:21 final size:23
Alignment explanation
Indices: 30180--30251 Score: 92
Period size: 23 Copynumber: 3.1 Consensus size: 23
30170 ATAGGTAAAA
* *
30180 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGTGCTT
*
30203 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGT-GCTT
*
30226 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGTGCTT
30249 ATA
1 ATA
30252 ATGTAAAATG
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
23 42 0.98
24 1 0.02
ACGTcount: A:0.35, C:0.04, G:0.22, T:0.39
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGTGCTT
Found at i:30353 original size:429 final size:429
Alignment explanation
Indices: 29549--30593 Score: 1944
Period size: 429 Copynumber: 2.5 Consensus size: 429
29539 GTTAATGTTG
*
29549 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAATAATTTTTTGTGCAAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAATAATTTTTTGTGCAAA
29614 TGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAA
66 TGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAA
29679 ATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTAAATATAATA
131 ATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTAAATATAATA
29744 GGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAAT
196 GGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAAT
* *
29809 AGGTAGTGGTTATATTGTAAAGTGTCTATCATTTTTATAAAAGTGTCCATAATTTTTTCACTGTC
261 AGGTAGTGGTTATAATGTAAAATGTCTATCATTTTTATAAAAGTGTCCATAATTTTTTCACTGTC
29874 GAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCG
326 GAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCG
29939 TCTAATGATTTATTTTTTACGTTACGATATATATTATTA
391 TCTAATGATTTATTTTTTACGTTACGATATATATTATTA
29978 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAATAATTTTTTGTGCAAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAATAATTTTTTGTGCAAA
*
30043 TAAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAA
66 TGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAA
*
30108 ATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGAACACTTTAAATATAATA
131 ATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTAAATATAATA
30173 GGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAAT
196 GGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAAT
* *
30238 AGGTAGTGGTTATAATGTAAAATGTCTATCATTTTTATAAAAGTGTCCATACTTTTTTCACTGTG
261 AGGTAGTGGTTATAATGTAAAATGTCTATCATTTTTATAAAAGTGTCCATAATTTTTTCACTGTC
*
30303 GAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATTTTAATTTAGTAATTATAGGCG
326 GAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCG
30368 TCTAATGATTTATTTTTTACGTTACGATATATATTATTA
391 TCTAATGATTTATTTTTTACGTTACGATATATATTATTA
30407 TTAAATTAAAAATTCTAAATAATA-TTT-T---ATA--AAAT-ATCAAATAATTTTTTGTGCAAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAATAATTTTTTGTGCAAA
30464 TGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAA
66 TGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAA
* *
30529 ATTACATAACTTTAAAAGAAGTATCGATTCTTTTTATAAAAAGTATGGACACTTTCAATATAATA
131 ATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTAAATATAATA
30594 TAATGTAATA
Statistics
Matches: 604, Mismatches: 12, Indels: 8
0.97 0.02 0.01
Matches are distributed among these distances:
421 148 0.25
422 4 0.01
424 3 0.00
427 1 0.00
428 3 0.00
429 445 0.74
ACGTcount: A:0.42, C:0.07, G:0.12, T:0.39
Consensus pattern (429 bp):
TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAATAATCAAATAATTTTTTGTGCAAA
TGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAATTGAAACATAA
ATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTAAATATAATA
GGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTAAT
AGGTAGTGGTTATAATGTAAAATGTCTATCATTTTTATAAAAGTGTCCATAATTTTTTCACTGTC
GAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGGCG
TCTAATGATTTATTTTTTACGTTACGATATATATTATTA
Found at i:30440 original size:22 final size:22
Alignment explanation
Indices: 30415--30456 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
30405 TATTAAATTA
30415 AAAAT-TCTAAATAATATTTTAT
1 AAAATATC-AAATAATATTTTAT
*
30437 AAAATATCAAATAATTTTTT
1 AAAATATCAAATAATATTTT
30457 GTGCAAATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (22 bp):
AAAATATCAAATAATATTTTAT
Found at i:37788 original size:3 final size:3
Alignment explanation
Indices: 37780--37846 Score: 84
Period size: 3 Copynumber: 22.0 Consensus size: 3
37770 AATATGTAAT
*
37780 TAA TAA TAA TAA TAA TAA TAA TTAA TAA -ACA AAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA -TAA TAA TA-A TAA TAA TAA TAA TAA
37826 TAA -AA TTAA TAA TAA TAA TAA
1 TAA TAA -TAA TAA TAA TAA TAA
37847 AATTAAAATT
Statistics
Matches: 58, Mismatches: 1, Indels: 10
0.84 0.01 0.14
Matches are distributed among these distances:
2 3 0.05
3 49 0.84
4 6 0.10
ACGTcount: A:0.67, C:0.01, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:37865 original size:11 final size:11
Alignment explanation
Indices: 37781--37865 Score: 53
Period size: 12 Copynumber: 7.2 Consensus size: 11
37771 ATATGTAATT
*
37781 AATAATAATAAT
1 AATAA-AATAAA
37793 AATAATAATTAATA
1 AATAA-AA-TAA-A
* *
37807 AACAAAATAAT
1 AATAAAATAAA
37818 AATAATAATAAA
1 AATAA-AATAAA
* *
37830 ATTAATAATAAT
1 AATAA-AATAAA
*
37842 AATAAAATTAA
1 AATAAAATAAA
*
37853 AATTAAATAAA
1 AATAAAATAAA
37864 AA
1 AA
37866 AGACCCGGAC
Statistics
Matches: 58, Mismatches: 12, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
11 19 0.33
12 30 0.52
13 5 0.09
14 4 0.07
ACGTcount: A:0.69, C:0.01, G:0.00, T:0.29
Consensus pattern (11 bp):
AATAAAATAAA
Found at i:37866 original size:18 final size:18
Alignment explanation
Indices: 37777--37864 Score: 98
Period size: 18 Copynumber: 5.1 Consensus size: 18
37767 TGTAATATGT
37777 AATTAATAATAATAAT--
1 AATTAATAATAATAATAA
37793 AA-TAATAATTAATAA-ACA
1 AATTAATAA-TAATAATA-A
*
37811 AAATAATAATAATAATAA
1 AATTAATAATAATAATAA
37829 AATTAATAATAATAATAA
1 AATTAATAATAATAATAA
*
37847 AATTAA-AATTA-AATAA
1 AATTAATAATAATAATAA
37863 AA
1 AA
37865 AAGACCCGGA
Statistics
Matches: 64, Mismatches: 2, Indels: 12
0.82 0.03 0.15
Matches are distributed among these distances:
15 6 0.09
16 15 0.23
17 4 0.06
18 32 0.50
19 7 0.11
ACGTcount: A:0.68, C:0.01, G:0.00, T:0.31
Consensus pattern (18 bp):
AATTAATAATAATAATAA
Found at i:38076 original size:43 final size:43
Alignment explanation
Indices: 38015--38349 Score: 242
Period size: 43 Copynumber: 7.8 Consensus size: 43
38005 TGTTGGGGAC
* * * * *
38015 GACACTGCTCATACGTGATGAAGAGTTCGGGTCGTCTAAAGGT
1 GACACGGCTCCTACGTGATGAGGAGTTCTGGTCATCTAAAGGT
* **
38058 GACACGGCTCCTACGTGATGAGGAGATCTGG---TC-AGGGGAT
1 GACACGGCTCCTACGTGATGAGGAGTTCTGGTCATCTAAAGG-T
* * * *
38098 GACACTGCTCATACGTGATGAAGAGTTCTTGGCCATCTAAAGGT
1 GACACGGCTCCTACGTGATGAGGAGTTC-TGGTCATCTAAAGGT
* * * *
38142 GATAACACAGTTCCTACGTGATGAGGACG-GCTGGAT-ATCTAAGGGT
1 G---ACACGGCTCCTACGTGATGAGGA-GTTCTGG-TCATCTAAAGGT
** * *
38188 GACACGGCTCCTACGTGATGAGGAAATCTGGTCAGCT---GAT
1 GACACGGCTCCTACGTGATGAGGAGTTCTGGTCATCTAAAGGT
* *
38228 GACACGGCTCATACGTGATGAAGAGTTCTGGTCATCTAAAGGT
1 GACACGGCTCCTACGTGATGAGGAGTTCTGGTCATCTAAAGGT
* * * *
38271 GATAACACGGTTCCTACGTGATGAGGACG-GCTGGTTATCT-ATGGTT
1 G---ACACGGCTCCTACGTGATGAGGA-GTTCTGGTCATCTAAAGG-T
*
38317 GACACGGCTCCTACGTGATGAGGAGGTCTGGTC
1 GACACGGCTCCTACGTGATGAGGAGTTCTGGTC
38350 TGGGATGACA
Statistics
Matches: 229, Mismatches: 41, Indels: 44
0.73 0.13 0.14
Matches are distributed among these distances:
39 3 0.01
40 61 0.27
41 3 0.01
42 2 0.01
43 84 0.37
44 4 0.02
45 6 0.03
46 44 0.19
47 21 0.09
48 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.25
Consensus pattern (43 bp):
GACACGGCTCCTACGTGATGAGGAGTTCTGGTCATCTAAAGGT
Found at i:38189 original size:46 final size:43
Alignment explanation
Indices: 38057--38386 Score: 219
Period size: 40 Copynumber: 7.7 Consensus size: 43
38047 CGTCTAAAGG
* *
38057 TGACACGGCTCCTACGTGATGAGGA-GATCTGG--TC-AGGGGA
1 TGACACGGCTCCTACGTGATGAGGACG-GCTGGTATCTAGGTGA
* * * * *
38097 TGACACTGCTCATACGTGATGAAGA-GTTCTTGGCCATCTAAAGGTGA
1 TGACACGGCTCCTACGTGATGAGGACG-GC-TGG-TATCT--AGGTGA
* * *
38144 TAACACAGTTCCTACGTGATGAGGACGGCTGGATATCTAAGG-G-
1 TGACACGGCTCCTACGTGATGAGGACGGCTGG-TATCT-AGGTGA
*** *
38187 TGACACGGCTCCTACGTGATGAGGAAATCTGG--TC-AGCTGA
1 TGACACGGCTCCTACGTGATGAGGACGGCTGGTATCTAGGTGA
* * *
38227 TGACACGGCTCATACGTGATGAAGA-GTTCTGGTCATCTAAAGGTGA
1 TGACACGGCTCCTACGTGATGAGGACG-GCTGGT-ATCT--AGGTGA
* *
38273 TAACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTATGGT--
1 TGACACGGCTCCTACGTGATGAGGACGGCTGG-TATCTA-GGTGA
38316 TGACACGGCTCCTACGTGATGAGGA-GGTCTGG--TCT-GG-GA
1 TGACACGGCTCCTACGTGATGAGGACGG-CTGGTATCTAGGTGA
*
38355 TGACACGGTTCCTACGTGATGAGGACGGCTGG
1 TGACACGGCTCCTACGTGATGAGGACGGCTGG
38387 CCATCTTTAG
Statistics
Matches: 234, Mismatches: 32, Indels: 49
0.74 0.10 0.16
Matches are distributed among these distances:
38 4 0.02
39 29 0.12
40 60 0.26
41 3 0.01
42 2 0.01
43 55 0.24
44 4 0.02
45 7 0.03
46 41 0.18
47 28 0.12
48 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.25
Consensus pattern (43 bp):
TGACACGGCTCCTACGTGATGAGGACGGCTGGTATCTAGGTGA
Found at i:38333 original size:129 final size:129
Alignment explanation
Indices: 38049--38376 Score: 514
Period size: 129 Copynumber: 2.5 Consensus size: 129
38039 GTTCGGGTCG
* *
38049 TCTAAAGGTGACACGGCTCCTACGTGATGAGGAGATCTGGTCAGGGGATGACACTGCTCATACGT
1 TCTAAGGGTGACACGGCTCCTACGTGATGAGGAGATCTGGTCA-GGGATGACACGGCTCATACGT
38114 GATGAAGAGTTCTTGGCCATCTAAAGGTGATAACACAGTTCCTACGTGATGAGGACGGCTGGATA
65 GATGAAGAGTTCTTGGCCATCTAAAGGTGATAACACAGTTCCTACGTGATGAGGACGGCTGGATA
* *
38179 TCTAAGGGTGACACGGCTCCTACGTGATGAGGAAATCTGGTCAGCTGATGACACGGCTCATACGT
1 TCTAAGGGTGACACGGCTCCTACGTGATGAGGAGATCTGGTCAG-GGATGACACGGCTCATACGT
* * *
38244 GATGAAGAGTTC-TGGTCATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGGCTGGTTA
65 GATGAAGAGTTCTTGGCCATCTAAAGGTGATAACACAGTTCCTACGTGATGAGGACGGCTGGATA
* * * * * *
38308 TCTATGGTTGACACGGCTCCTACGTGATGAGGAGGTCTGGTCTGGGATGACACGGTTCCTACGTG
1 TCTAAGGGTGACACGGCTCCTACGTGATGAGGAGATCTGGTCAGGGATGACACGGCTCATACGTG
38373 ATGA
66 ATGA
38377 GGACGGCTGG
Statistics
Matches: 182, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
128 22 0.12
129 89 0.49
130 71 0.39
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.25
Consensus pattern (129 bp):
TCTAAGGGTGACACGGCTCCTACGTGATGAGGAGATCTGGTCAGGGATGACACGGCTCATACGTG
ATGAAGAGTTCTTGGCCATCTAAAGGTGATAACACAGTTCCTACGTGATGAGGACGGCTGGATA
Found at i:38370 original size:39 final size:41
Alignment explanation
Indices: 38146--38386 Score: 190
Period size: 43 Copynumber: 5.7 Consensus size: 41
38136 AAAGGTGATA
*
38146 ACACAGTTCCTACGTGATGAGGACGGCTGGATATCTAAGGG-TG
1 ACACGGTTCCTACGTGATGAGGACGGCTGG-T-TCT-AGGGATG
* *** *
38189 ACACGGCTCCTACGTGATGAGGAAATCTGG-TC-AGCTGATG
1 ACACGGTTCCTACGTGATGAGGACGGCTGGTTCTAG-GGATG
* * * * *
38229 ACACGGCTCATACGTGATGAAGA-GTTCTGGTCATCTAAAGGTGATA
1 ACACGGTTCCTACGTGATGAGGACG-GCTGGT--TCT--AGG-GATG
* *
38275 ACACGGTTCCTACGTGATGAGGACGGCTGGTTATCTATGGTTG
1 ACACGGTTCCTACGTGATGAGGACGGCTGG-T-TCTAGGGATG
*
38318 ACACGGCTCCTACGTGATGAGGA-GGTCTGG-TCT-GGGATG
1 ACACGGTTCCTACGTGATGAGGACGG-CTGGTTCTAGGGATG
38357 ACACGGTTCCTACGTGATGAGGACGGCTGG
1 ACACGGTTCCTACGTGATGAGGACGGCTGG
38387 CCATCTTTAG
Statistics
Matches: 162, Mismatches: 22, Indels: 32
0.75 0.10 0.15
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 35 0.22
42 2 0.01
43 55 0.34
44 2 0.01
46 33 0.20
47 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.24
Consensus pattern (41 bp):
ACACGGTTCCTACGTGATGAGGACGGCTGGTTCTAGGGATG
Found at i:38608 original size:100 final size:100
Alignment explanation
Indices: 38504--38684 Score: 247
Period size: 100 Copynumber: 1.8 Consensus size: 100
38494 TCGAGAGAAG
* * * * *
38504 CAAAATTTTGTTTCCAAAGAAAGAGATTCAATGATTTTT-TTTAAAAGACATTGTCATAAGAGAC
1 CAAAATTTTGTTTCCAAAG-AACAGACTCAAGGATTTTTCTTCAAAAGAAATTGTCATAAGAGAC
* *
38568 AAAACTTTGTTTTCAGAAAATTGTATCTTAGTGAGA
65 AAAACCTTGTTTCCAGAAAATTGTATCTTAGTGAGA
** * *
38604 CAAAATTTTGTTTCCAAAGAACAGACTCAAGGATTTTTCTTCAAAAGAAATTGTTTTAAGGGATA
1 CAAAATTTTGTTTCCAAAGAACAGACTCAAGGATTTTTCTTCAAAAGAAATTGTCATAAGAGACA
38669 AAACCTTGTTTCCAGA
66 AAACCTTGTTTCCAGA
38685 GAAACAGACT
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
99 16 0.23
100 53 0.77
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (100 bp):
CAAAATTTTGTTTCCAAAGAACAGACTCAAGGATTTTTCTTCAAAAGAAATTGTCATAAGAGACA
AAACCTTGTTTCCAGAAAATTGTATCTTAGTGAGA
Found at i:38919 original size:66 final size:65
Alignment explanation
Indices: 38829--38997 Score: 164
Period size: 65 Copynumber: 2.6 Consensus size: 65
38819 GTCTTAAGGA
* * * * * *
38829 AGACAAAA-TTTGTTTTAATAGAAACGATCTCAAATATGGGTATTTTCAAAAGAAGTTGTC-TCC
1 AGACAAAATTTTGTTTCAATAGAAACAAACTCAAAGAT--GTATTTTCAAAAGAAATTGTCTTCA
38892 AG
64 AG
* * *
38894 AGACAAAATTTTGTTTCAA-AGGAAACAAACTCAAAGATTTTTTTTCAAAAGAAATTGTCTTTAA
1 AGACAAAATTTTGTTTCAATA-GAAACAAACTCAAAGATGTATTTTCAAAAGAAATTGTCTTCAA
38958 G
65 G
* * * * *
38959 AGATAAAATTTTGTTTTAAAATAAACAGACTCAAAGATG
1 AGACAAAATTTTGTTTCAATAGAAACAAACTCAAAGATG
38998 GATTACATCT
Statistics
Matches: 86, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
64 18 0.21
65 44 0.51
66 24 0.28
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.33
Consensus pattern (65 bp):
AGACAAAATTTTGTTTCAATAGAAACAAACTCAAAGATGTATTTTCAAAAGAAATTGTCTTCAAG
Found at i:38953 original size:64 final size:65
Alignment explanation
Indices: 38871--38996 Score: 173
Period size: 65 Copynumber: 2.0 Consensus size: 65
38861 AATATGGGTA
* * *
38871 TTTTCAAAAGAAGTTGTC-TCCAGAGACAAAATTTTGTTTCAAAGGAAACAAACTCAAAGATTTT
1 TTTTCAAAAGAAATTGTCTTCAAGAGACAAAATTTTGTTTCAAAAGAAACAAACTCAAAGATTTT
* * * * *
38935 TTTTCAAAAGAAATTGTCTTTAAGAGATAAAATTTTGTTTTAAAATAAACAGACTCAAAGAT
1 TTTTCAAAAGAAATTGTCTTCAAGAGACAAAATTTTGTTTCAAAAGAAACAAACTCAAAGAT
38997 GGATTACATC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
64 17 0.32
65 36 0.68
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.33
Consensus pattern (65 bp):
TTTTCAAAAGAAATTGTCTTCAAGAGACAAAATTTTGTTTCAAAAGAAACAAACTCAAAGATTTT
Found at i:39602 original size:36 final size:36
Alignment explanation
Indices: 39502--39611 Score: 123
Period size: 36 Copynumber: 3.1 Consensus size: 36
39492 ATAATTTTGA
* * * * * *
39502 AAATGGTCTCTAGTGAGACAACATTTGTTCTTAAAG
1 AAATTGTCTCAAGCGAGACAAAATTTGTTTTTAGAG
* *
39538 AAATTGTCTCAAACGAGACAAAAATTGTTTTTAGAG
1 AAATTGTCTCAAGCGAGACAAAATTTGTTTTTAGAG
**
39574 AAATTGTCTCAAGCGAGACAAGGTTTGTTTTT-GAG
1 AAATTGTCTCAAGCGAGACAAAATTTGTTTTTAGAG
39609 AAA
1 AAA
39612 ACGATCTCAA
Statistics
Matches: 62, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
35 6 0.10
36 56 0.90
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (36 bp):
AAATTGTCTCAAGCGAGACAAAATTTGTTTTTAGAG
Found at i:39637 original size:36 final size:36
Alignment explanation
Indices: 39507--39639 Score: 92
Period size: 36 Copynumber: 3.7 Consensus size: 36
39497 TTTGAAAATG
* * * * **
39507 GTCTCTAGTGAGACAA-CATTTGTTCTTAAAGAAATT
1 GTCTCAAGCGAGACAAGC-TTTGTTTTTAGAGAAAAC
* *** **
39543 GTCTCAAACGAGACAAAAATTGTTTTTAGAGAAATT
1 GTCTCAAGCGAGACAAGCTTTGTTTTTAGAGAAAAC
*
39579 GTCTCAAGCGAGACAAGGTTTGTTTTT-GAGAAAAC
1 GTCTCAAGCGAGACAAGCTTTGTTTTTAGAGAAAAC
*
39614 GATCTCAAGTGAGATCAA-CTTTGTTT
1 G-TCTCAAGCGAGA-CAAGCTTTGTTT
39640 AATGTGAAAC
Statistics
Matches: 79, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
35 7 0.09
36 69 0.87
37 3 0.04
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.33
Consensus pattern (36 bp):
GTCTCAAGCGAGACAAGCTTTGTTTTTAGAGAAAAC
Found at i:39899 original size:21 final size:21
Alignment explanation
Indices: 39838--39899 Score: 51
Period size: 21 Copynumber: 3.1 Consensus size: 21
39828 TGTGGAAAAA
*
39838 TGTCTCAAGCGAGACATAATT
1 TGTCTCAAGCGAGACAAAATT
* * * *
39859 TGTTTTAA---AGA-GAAAGT
1 TGTCTCAAGCGAGACAAAATT
39876 TGTCTCAAGCGAGACAAAATT
1 TGTCTCAAGCGAGACAAAATT
39897 TGT
1 TGT
39900 TTTTAAGAAA
Statistics
Matches: 28, Mismatches: 9, Indels: 8
0.62 0.20 0.18
Matches are distributed among these distances:
17 9 0.32
18 3 0.11
20 3 0.11
21 13 0.46
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.31
Consensus pattern (21 bp):
TGTCTCAAGCGAGACAAAATT
Found at i:39926 original size:36 final size:38
Alignment explanation
Indices: 39840--39940 Score: 107
Period size: 38 Copynumber: 2.7 Consensus size: 38
39830 TGGAAAAATG
* * * *
39840 TCTCAAGCGAGACATAATTTGTTTTAAAGAGAAAGTTG
1 TCTCAAGCGAGACAAAATTTGTTTTTAAGAGAAAGCTA
39878 TCTCAAGCGAGACAAAATTTGTTTTTAAGA-AAA-CTA
1 TCTCAAGCGAGACAAAATTTGTTTTTAAGAGAAAGCTA
* * * *
39914 TCTCTAGTGAGACGACACTTTGTTTTT
1 TCTCAAGCGAGAC-AAAATTTGTTTTT
39941 TTGTTTTTTT
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
36 12 0.22
37 14 0.26
38 28 0.52
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.35
Consensus pattern (38 bp):
TCTCAAGCGAGACAAAATTTGTTTTTAAGAGAAAGCTA
Found at i:40339 original size:16 final size:17
Alignment explanation
Indices: 40281--40343 Score: 73
Period size: 16 Copynumber: 3.9 Consensus size: 17
40271 ATCATGTATG
40281 TATG-TGTATGTATGTA
1 TATGTTGTATGTATGTA
*
40297 TAT-ATGTATGTATG--
1 TATGTTGTATGTATGTA
40311 TATGTATGTATGTATGTA
1 TATGT-TGTATGTATGTA
40329 TATGTTG-ATGTATGT
1 TATGTTGTATGTATGT
40344 TTTCTCAATC
Statistics
Matches: 41, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
14 3 0.07
16 31 0.76
17 2 0.05
18 5 0.12
ACGTcount: A:0.25, C:0.00, G:0.24, T:0.51
Consensus pattern (17 bp):
TATGTTGTATGTATGTA
Found at i:40343 original size:4 final size:4
Alignment explanation
Indices: 40274--40329 Score: 89
Period size: 4 Copynumber: 14.5 Consensus size: 4
40264 TTTATGTATC
*
40274 ATGT ATGT ATG- -TGT ATGT ATGT ATAT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
40320 ATGT ATGT AT
1 ATGT ATGT AT
40330 ATGTTGATGT
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
2 2 0.04
4 46 0.96
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:47638 original size:3 final size:3
Alignment explanation
Indices: 47630--47696 Score: 84
Period size: 3 Copynumber: 22.0 Consensus size: 3
47620 AATATGTAAT
*
47630 TAA TAA TAA TAA TAA TAA TAA TTAA TAA -ACA AAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA -TAA TAA TA-A TAA TAA TAA TAA TAA
47676 TAA -AA TTAA TAA TAA TAA TAA
1 TAA TAA -TAA TAA TAA TAA TAA
47697 AATTAAAATT
Statistics
Matches: 58, Mismatches: 1, Indels: 10
0.84 0.01 0.14
Matches are distributed among these distances:
2 3 0.05
3 49 0.84
4 6 0.10
ACGTcount: A:0.67, C:0.01, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:47715 original size:11 final size:11
Alignment explanation
Indices: 47631--47715 Score: 53
Period size: 12 Copynumber: 7.2 Consensus size: 11
47621 ATATGTAATT
*
47631 AATAATAATAAT
1 AATAA-AATAAA
47643 AATAATAATTAATA
1 AATAA-AA-TAA-A
* *
47657 AACAAAATAAT
1 AATAAAATAAA
47668 AATAATAATAAA
1 AATAA-AATAAA
* *
47680 ATTAATAATAAT
1 AATAA-AATAAA
*
47692 AATAAAATTAA
1 AATAAAATAAA
*
47703 AATTAAATAAA
1 AATAAAATAAA
47714 AA
1 AA
47716 AGACCCGGAC
Statistics
Matches: 58, Mismatches: 12, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
11 19 0.33
12 30 0.52
13 5 0.09
14 4 0.07
ACGTcount: A:0.69, C:0.01, G:0.00, T:0.29
Consensus pattern (11 bp):
AATAAAATAAA
Found at i:47716 original size:18 final size:18
Alignment explanation
Indices: 47627--47714 Score: 98
Period size: 18 Copynumber: 5.1 Consensus size: 18
47617 TGTAATATGT
47627 AATTAATAATAATAAT--
1 AATTAATAATAATAATAA
47643 AA-TAATAATTAATAA-ACA
1 AATTAATAA-TAATAATA-A
*
47661 AAATAATAATAATAATAA
1 AATTAATAATAATAATAA
47679 AATTAATAATAATAATAA
1 AATTAATAATAATAATAA
*
47697 AATTAA-AATTA-AATAA
1 AATTAATAATAATAATAA
47713 AA
1 AA
47715 AAGACCCGGA
Statistics
Matches: 64, Mismatches: 2, Indels: 12
0.82 0.03 0.15
Matches are distributed among these distances:
15 6 0.09
16 15 0.23
17 4 0.06
18 32 0.50
19 7 0.11
ACGTcount: A:0.68, C:0.01, G:0.00, T:0.31
Consensus pattern (18 bp):
AATTAATAATAATAATAA
Found at i:55075 original size:146 final size:146
Alignment explanation
Indices: 54786--55056 Score: 364
Period size: 146 Copynumber: 1.8 Consensus size: 146
54776 TTTCTTAGTA
* * *
54786 ACCATTTAATGAACAATGAAAATAACTTTTCAGTGCCCAATCACATCATTTCTGAACCGTTTCAG
1 ACCATTTAATGAACAATGAAAATAACTCTCCAGTGCCCAATCACATCATTTCTGAAACGTTTCAG
* * *
54851 TGATATCACTTCTTCAATGATATATTAGACCATTGAATGATGTTTTTGACAATTTTTGATGAAAA
66 TGATATCACTTCATCAATGATATATTAGACCATTGAATGATATTTCTGACAATTTTTGATGAAAA
*** **
54916 TGGTCATTTCTCAATG
131 CCCTCATAACTCAATG
* * *
54932 ACCATTTAATGAACAATGACAATAACTCTCCAGTGCCTAATCACATCATTTCT-AAACTTTTCAG
1 ACCATTTAATGAACAATGAAAATAACTCTCCAGTGCCCAATCACATCATTTCTGAAACGTTTCAG
*
54996 TGATATATCACTTCAAATCAATGATATATTAGACCATTGAATGATATTTCTGACCATTTTT
66 TG--ATATCACTTC--ATCAATGATATATTAGACCATTGAATGATATTTCTGACAATTTTT
55057 TGTAACACCC
Statistics
Matches: 111, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
145 11 0.10
146 49 0.44
147 10 0.09
149 41 0.37
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.37
Consensus pattern (146 bp):
ACCATTTAATGAACAATGAAAATAACTCTCCAGTGCCCAATCACATCATTTCTGAAACGTTTCAG
TGATATCACTTCATCAATGATATATTAGACCATTGAATGATATTTCTGACAATTTTTGATGAAAA
CCCTCATAACTCAATG
Found at i:58063 original size:14 final size:14
Alignment explanation
Indices: 58034--58063 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
58024 ATCAATTAAC
*
58034 AAGCAAAATAAAAA
1 AAGCAAAAAAAAAA
58048 AAGCAAAAAAAAAA
1 AAGCAAAAAAAAAA
58062 AA
1 AA
58064 TGTTGGTGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.83, C:0.07, G:0.07, T:0.03
Consensus pattern (14 bp):
AAGCAAAAAAAAAA
Found at i:62110 original size:215 final size:214
Alignment explanation
Indices: 61837--62339 Score: 780
Period size: 215 Copynumber: 2.3 Consensus size: 214
61827 ATTTTATGAA
* * * * *
61837 AAATACAAATTTAAGAACTAAATTGAACAAATATGAAATTACAAATTAAAATTTAAATAAATTAA
1 AAATATAATTTTAAGGACTAAATTGAACAAATATGAAATTA-AAAATAAAAATTAAATAAATTAA
** *
61902 ACAACATGCATTGATGAGGGATCAAATCAAAATAATTTTAAATTGTGAGG-TTGAAATTAATACA
65 ACAACACACATTGATGAGGGATCAAATCAAAATAATTTTAAATTGTGAGGCGT-AAATTAATAC-
61966 AAAAAATATTAAATTATATC-CATTTAAAAAGTTATGGGC-CAATT-AAAAATATAAATAAGTAA
128 AAAAAATATTAAATTATA-CACATTTAAAAAGTTAT-GGCTCAATTAAAAAATATAAATAAGTAA
*
62028 TAAGTATGGGTCAATTTTAGATGC
191 TAAGTATGGGTCAATTTCAGATGC
*
62052 AAATATAATTTTAAGGACTAAATTGAATAAATATGAAATTAAAAATAAATAATTAAATAAATTAA
1 AAATATAATTTTAAGGACTAAATTGAACAAATATGAAATTAAAAATAAA-AATTAAATAAATTAA
**
62117 ACAACACACATTGATGAGGGATCAAATTGAAATAATTTTAAATTGTGAGGCGTAAATTAATACAA
65 ACAACACACATTGATGAGGGATCAAATCAAAATAATTTTAAATTGTGAGGCGTAAATTAATACAA
*
62182 AAAGTATTAAATTATACACATTTAAAAAGTTATGGCTCAATTAAAAAATATAAATAAGTAATAAG
130 AAAATATTAAATTATACACATTTAAAAAGTTATGGCTCAATTAAAAAATATAAATAAGTAATAAG
*
62247 TATGGGTCAATTTCATATGC
195 TATGGGTCAATTTCAGATGC
*
62267 AAATATAATTTTAAGGACTAAATTGAACAAATATGAAATTATAAATAAAAATTTAAATAAATTAA
1 AAATATAATTTTAAGGACTAAATTGAACAAATATGAAATTAAAAATAAAAA-TTAAATAAATTAA
62332 ACAACACA
65 ACAACACA
62340 AAGGATCAAA
Statistics
Matches: 266, Mismatches: 16, Indels: 12
0.90 0.05 0.04
Matches are distributed among these distances:
213 4 0.02
214 46 0.17
215 215 0.81
216 1 0.00
ACGTcount: A:0.51, C:0.07, G:0.11, T:0.31
Consensus pattern (214 bp):
AAATATAATTTTAAGGACTAAATTGAACAAATATGAAATTAAAAATAAAAATTAAATAAATTAAA
CAACACACATTGATGAGGGATCAAATCAAAATAATTTTAAATTGTGAGGCGTAAATTAATACAAA
AAATATTAAATTATACACATTTAAAAAGTTATGGCTCAATTAAAAAATATAAATAAGTAATAAGT
ATGGGTCAATTTCAGATGC
Found at i:62448 original size:2 final size:2
Alignment explanation
Indices: 62437--62570 Score: 111
Period size: 2 Copynumber: 68.0 Consensus size: 2
62427 CTAAAACAAC
*
62437 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA AA CTA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA
* * * *
62479 TA T- TG TA TA TA TA AA CTA TA TA -A TT TA TA TT TA TA T- TA T-
1 TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA
*
62518 TA TA TA CTA TA TA TA AA CTA TA TA T- TA TA TA TA T- TA TA TA TA
1 TA TA TA -TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA
*
62560 AA CTA TA TA TA
1 TA -TA TA TA TA
62571 CCATGTATAA
Statistics
Matches: 107, Mismatches: 13, Indels: 24
0.74 0.09 0.17
Matches are distributed among these distances:
1 7 0.07
2 94 0.88
3 6 0.06
ACGTcount: A:0.48, C:0.04, G:0.01, T:0.48
Consensus pattern (2 bp):
TA
Found at i:62449 original size:9 final size:9
Alignment explanation
Indices: 62437--62596 Score: 84
Period size: 9 Copynumber: 17.2 Consensus size: 9
62427 CTAAAACAAC
62437 TATAATATA
1 TATAATATA
62446 TATATATATA
1 TATA-ATATA
62456 TATATATATA
1 TATA-ATATA
62466 TATAAACTATA
1 TAT-AA-TATA
*
62477 TATATTGTATA
1 TATA--ATATA
62488 TATAA-ACTA
1 TATAATA-TA
62497 TATAAT-T-
1 TATAATATA
*
62504 TAT-ATTTA
1 TATAATATA
*
62512 TATTAT-TA
1 TATAATATA
*
62520 TATACTATA
1 TATAATATA
62529 TATAA-ACTA
1 TATAATA-TA
*
62538 TATATTATA
1 TATAATATA
*
62547 TATATTATA
1 TATAATATA
62556 TATAAACTATA
1 TAT-AA-TATA
*
62567 TATACCATGTA
1 TATA--ATATA
62578 TA-AACTATA
1 TATAA-TATA
62587 -ATAATATA
1 TATAATATA
62595 TA
1 TA
62597 GTTTATATAT
Statistics
Matches: 122, Mismatches: 9, Indels: 40
0.71 0.05 0.23
Matches are distributed among these distances:
6 2 0.02
7 4 0.03
8 18 0.15
9 45 0.37
10 24 0.20
11 28 0.23
12 1 0.01
ACGTcount: A:0.48, C:0.05, G:0.01, T:0.46
Consensus pattern (9 bp):
TATAATATA
Found at i:62711 original size:17 final size:17
Alignment explanation
Indices: 62691--62744 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
62681 CTATACAATT
* *
62691 TATATTTATATATTATG
1 TATATTTATAAATTATA
* *
62708 TATAATTATAAATAATA
1 TATATTTATAAATTATA
62725 TATATTGTATAAATTATA
1 TATATT-TATAAATTATA
62743 TA
1 TA
62745 GTTTATTAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
17 18 0.60
18 12 0.40
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (17 bp):
TATATTTATAAATTATA
Found at i:62764 original size:22 final size:24
Alignment explanation
Indices: 62723--62781 Score: 77
Period size: 22 Copynumber: 2.5 Consensus size: 24
62713 TTATAAATAA
* *
62723 TATATATTGTATAAATTATATAGTT
1 TATATA-TATATAAACTATATAGTT
62748 TAT-TA-ATATAAACTATATAGTT
1 TATATATATATAAACTATATAGTT
62770 TATATATATATA
1 TATATATATATA
62782 GTATATATGG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
22 18 0.60
23 2 0.07
24 7 0.23
25 3 0.10
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (24 bp):
TATATATATATAAACTATATAGTT
Found at i:64970 original size:2 final size:2
Alignment explanation
Indices: 64963--64989 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
64953 ATCACAAAGC
64963 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
64990 GCACATTCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:68283 original size:33 final size:34
Alignment explanation
Indices: 68204--68283 Score: 108
Period size: 35 Copynumber: 2.4 Consensus size: 34
68194 TCAAAATTCC
* *
68204 AAAACACTTCAATTACATTCTAAACCCTAAATTTT
1 AAAATACTTTAATTACATTCTAAACCCTAAA-TTT
*
68239 AAAATACTTTAATTACATTCTTAACCCTAAA-TT
1 AAAATACTTTAATTACATTCTAAACCCTAAATTT
*
68272 AAAATATTTTAA
1 AAAATACTTTAA
68284 AATTTGGGGT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
33 13 0.32
35 28 0.68
ACGTcount: A:0.45, C:0.17, G:0.00, T:0.38
Consensus pattern (34 bp):
AAAATACTTTAATTACATTCTAAACCCTAAATTT
Found at i:68342 original size:35 final size:34
Alignment explanation
Indices: 68266--68343 Score: 102
Period size: 35 Copynumber: 2.2 Consensus size: 34
68256 TTCTTAACCC
*
68266 TAAATTAAAATATTTTAAAATTTGGGGTTTAAAA
1 TAAATTGAAATATTTTAAAATTTGGGGTTTAAAA
* * *
68300 TATAATTGAATTATTTTGAAATTTGGGGTTTATAA
1 TA-AATTGAAATATTTTAAAATTTGGGGTTTAAAA
68335 TGAAATTGA
1 T-AAATTGA
68344 GGATTGTGTT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
34 2 0.05
35 35 0.92
36 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (34 bp):
TAAATTGAAATATTTTAAAATTTGGGGTTTAAAA
Done.