Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000660.1 Hibiscus syriacus cultivar Beakdansim tig00001285_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30758

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4967--5145
89
2.0
89
94
0
313
44
26
16
13
1.84
7469--7506
15
2.5
15
87
12
51
31
0
2
65
1.06
8434--8476
20
2.2
20
91
0
68
32
13
0
53
1.41
9146--9201
27
2.0
28
89
3
87
50
19
5
25
1.69
15812--15857
9
5.0
9
81
5
56
73
0
2
23
0.94
19258--19347
19
4.7
19
95
0
162
23
15
17
43
1.87
19532--19687
27
5.7
28
69
24
93
44
0
1
53
1.16
19506--19568
23
2.6
24
78
19
60
52
0
0
47
1.00
19595--19688
28
3.3
28
80
12
86
43
0
2
54
1.12
19681--19742
23
2.6
23
84
5
70
51
4
3
40
1.39
19834--19871
18
2.0
20
85
10
53
60
0
0
39
0.97
20019--20069
20
2.5
20
93
0
84
35
9
9
45
1.71
20062--20133
15
4.9
15
89
1
110
36
20
5
37
1.76
20052--20133
30
2.8
30
90
1
121
35
18
6
40
1.75
21756--21787
2
16.0
2
100
0
64
50
0
0
50
1.00
22116--22172
21
2.7
21
86
8
71
45
5
17
31
1.71
26750--26797
21
2.3
21
96
0
87
41
12
18
27
1.86
27398--27455
29
2.0
29
93
0
98
24
25
8
41
1.83
28124--28314
92
2.0
95
93
3
334
36
19
13
30
1.90
29144--29176
16
2.1
16
100
0
66
57
18
0
24
1.40
29220--29290
9
8.7
9
71
25
52
56
0
0
43
0.99
29244--29296
25
2.1
25
96
0
97
58
0
0
41
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29251--29304
25
2.2
25
86
0
72
62
0
0
37
0.95

Tables:   1

The End!