Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006600.1 Hibiscus syriacus cultivar Beakdansim tig00016189_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50904

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
895--985
6
15.5
6
73
24
79
81
1
2
15
0.85
892--1004
25
4.5
25
76
19
96
78
1
2
16
0.95
896--995
5
20.8
5
73
20
65
81
1
2
16
0.85
910--1041
16
8.1
15
73
17
88
76
1
5
16
1.04
868--990
57
2.2
57
82
10
146
78
3
4
14
1.03
894--989
41
2.3
40
83
10
131
81
1
2
15
0.85
892--1041
57
2.6
53
80
17
149
76
2
4
16
1.04
1242--1285
21
2.0
21
86
4
61
75
0
4
20
0.98
1413--1498
32
2.8
30
73
16
77
69
6
1
22
1.19
1487--1513
14
1.9
14
100
0
54
66
0
0
33
0.92
3032--3064
17
1.9
17
100
0
66
30
0
21
48
1.50
12103--12254
66
2.3
63
84
8
182
32
21
17
28
1.96
13860--13902
21
2.0
23
86
9
63
37
2
2
58
1.24
15258--15311
2
27.0
2
96
0
99
48
0
1
50
1.11
16605--16659
18
3.3
18
71
23
66
18
47
21
12
1.82
16646--16688
8
5.5
8
88
5
70
13
34
25
25
1.93
16605--16667
31
2.2
28
83
13
76
17
46
22
14
1.84
16610--16646
13
2.8
13
83
0
56
18
45
21
13
1.84
19150--19258
24
4.5
24
74
4
94
21
14
16
47
1.82
24668--24737
11
6.0
12
79
17
60
80
4
15
0
0.87
24663--24737
15
4.8
15
76
12
62
78
5
16
0
0.92
24669--24719
10
4.8
10
88
9
66
84
1
13
0
0.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24681--24734
5
10.6
5
84
4
72
79
1
18
0
0.82
24669--24737
22
3.1
22
82
16
72
81
2
15
0
0.81
25939--26039
36
2.7
37
72
17
93
32
20
8
37
1.84
26118--26249
65
2.2
56
78
19
158
24
20
14
40
1.89
26139--26245
36
3.2
36
67
26
97
24
20
14
41
1.89
26260--26595
131
2.5
134
82
4
378
26
31
17
25
1.97
26340--26598
134
2.0
131
83
3
331
26
30
16
26
1.97
26809--26869
3
19.7
3
80
12
70
31
1
1
65
1.12
26809--26869
28
2.2
28
85
5
79
31
1
1
65
1.12
27259--27324
30
2.2
30
97
0
123
50
30
7
12
1.67
27554--27680
65
2.0
65
90
0
200
24
21
11
42
1.86
27693--28044
131
2.7
131
82
4
384
26
29
17
26
1.98
27751--28044
134
2.2
131
83
3
356
25
28
17
28
1.98
28243--28315
3
23.7
3
81
10
76
30
2
2
64
1.21
28232--28283
28
2.0
28
81
11
65
38
0
1
59
1.08
28243--28315
31
2.4
30
86
4
92
30
2
2
64
1.21
33252--33311
22
2.7
22
89
0
93
40
30
6
23
1.80
38382--38422
21
2.0
21
90
0
64
26
21
24
26
2.00
41937--41982
22
2.1
22
100
0
92
34
10
8
45
1.70
43095--43125
16
1.9
16
100
0
62
51
19
9
19
1.74
44002--44046
15
2.9
16
84
15
60
37
0
4
57
1.19
47278--47318
21
2.0
21
90
0
64
41
14
0
43
1.45

Tables:   1

The End!