genome.fa.s6601.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006601.1 Hibiscus syriacus cultivar Beakdansim tig00016192_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44635

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8--61	24	2.3	23	87	6	81	22	16	20	40	1.91
2277--2312	18	2.0	18	94	0	63	55	25	2	16	1.55
2578--2675	20	5.2	20	69	15	84	39	23	20	16	1.91
2621--2676	20	2.8	20	89	10	89	44	23	16	16	1.86
2692--2728	18	2.1	18	89	0	56	45	24	13	16	1.83
2732--2792	20	3.1	20	85	2	88	21	21	24	32	1.98
3653--3739	39	2.2	39	97	0	165	47	20	14	17	1.83
3908--3984	20	4.2	20	67	23	69	42	19	18	19	1.89
3947--3991	20	2.2	20	96	0	81	46	22	15	15	1.83
5577--5676	42	2.4	42	81	6	121	22	16	36	26	1.94
5577--5672	21	4.6	21	74	8	88	21	16	35	26	1.95
7908--7941	11	2.8	12	91	8	52	79	11	8	0	0.94
8149--8199	22	2.3	22	93	0	84	23	13	41	21	1.89
8327--8430	20	5.2	20	76	15	108	18	18	22	41	1.90
8327--8446	60	2.0	60	80	6	136	21	18	22	37	1.94
8460--8507	20	2.4	20	86	6	62	27	12	33	27	1.92
10058--10101	20	2.3	19	84	7	61	40	2	2	54	1.25
12243--12453	2	115.0	2	67	28	98	39	1	2	55	1.26
12286--12493	7	31.4	7	75	20	141	37	2	2	57	1.25
12302--12510	3	65.3	3	71	22	101	35	2	1	59	1.21
12256--12470	115	1.8	113	83	13	283	38	1	2	57	1.24
12300--12456	27	5.8	28	75	20	120	38	1	1	57	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12243--12510	14	19.5	13	73	22	146	37	2	2	57	1.25
12243--12510	35	7.8	34	73	19	150	37	2	2	57	1.25
13665--13712	13	3.7	13	88	0	69	35	20	25	18	1.95
14193--14281	47	1.9	47	84	6	119	31	22	6	39	1.80
16350--16671	46	7.0	46	87	0	430	42	13	21	22	1.87
18016--18114	32	3.2	31	74	16	87	21	9	2	67	1.28
28447--28576	23	6.0	22	71	24	98	38	0	2	58	1.16
28448--28555	42	2.6	42	83	11	127	38	0	1	58	1.15
28447--28543	28	4.0	24	76	20	87	40	1	2	56	1.18
28448--28598	7	22.9	7	68	22	78	37	0	2	59	1.16
28520--28610	31	2.8	32	78	12	89	31	1	2	64	1.12
28451--28614	66	2.5	65	81	13	169	35	0	2	61	1.14
28445--28612	14	12.0	14	69	21	61	35	0	2	61	1.14
28564--28612	21	2.5	20	87	12	68	26	0	2	71	0.97
29715--29759	18	2.4	18	85	10	56	13	4	2	80	0.97
36040--36105	22	3.0	22	77	16	75	51	1	10	36	1.46
37826--38035	41	5.1	41	74	11	142	32	10	19	37	1.85

Tables:   1

The End!