genome.fa.s6602.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006602.1 Hibiscus syriacus cultivar Beakdansim tig00016194_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79189

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2133--2192	21	2.9	21	80	9	68	23	11	35	30	1.90
3896--3932	19	2.0	18	89	5	56	62	0	2	35	1.10
3929--3968	22	1.9	21	85	10	55	45	10	5	40	1.60
4103--5464	687	2.0	687	98	0	2652	41	19	14	25	1.89
6168--6221	28	2.0	28	88	3	83	50	9	1	38	1.45
13233--13290	29	2.0	30	86	3	82	46	17	6	29	1.74
13308--13357	25	2.0	25	88	0	73	54	10	6	30	1.58
14556--14611	29	1.9	29	82	7	69	37	5	25	32	1.78
14991--15056	33	2.0	33	94	5	116	22	19	15	42	1.88
15067--15113	3	16.3	3	86	8	71	2	31	0	65	1.04
23365--23422	25	2.3	26	91	5	93	43	17	13	25	1.86
24329--24363	15	2.3	15	95	0	61	42	2	25	28	1.69
24908--24991	31	2.7	31	74	5	82	41	11	7	39	1.69
27573--27622	20	2.5	20	86	0	64	28	10	18	44	1.81
35952--35998	24	2.0	24	95	0	85	55	2	8	34	1.42
37191--37250	31	1.9	31	89	0	93	41	6	8	43	1.61
37759--37853	24	3.6	27	77	12	83	53	1	1	44	1.14
37761--37921	64	2.5	64	87	5	225	57	1	0	40	1.11
37892--37926	17	2.1	16	89	5	52	71	0	0	28	0.86
37878--37928	12	4.4	11	82	9	57	70	0	0	29	0.87
39184--39233	15	3.1	15	78	18	55	52	0	2	46	1.12
41148--41188	22	2.0	21	85	9	57	41	0	26	31	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41158--41219	27	2.3	27	81	10	74	45	1	20	32	1.61
45527--45595	2	35.0	2	97	2	131	49	0	0	50	1.00
48931--49004	33	2.2	33	97	0	139	35	13	16	35	1.88
48933--49023	33	2.8	32	90	6	123	35	15	16	32	1.90
49883--49990	54	2.0	53	90	1	171	29	14	10	45	1.78
53801--53840	21	2.0	21	90	5	64	40	15	22	22	1.91
53861--53904	20	2.2	19	84	8	52	29	13	22	34	1.93
54845--54879	3	11.7	3	100	0	70	34	0	0	65	0.93
62763--62792	16	1.9	16	93	6	53	30	6	6	56	1.51
62949--62977	14	2.0	15	93	6	51	62	10	6	20	1.50
67355--67393	4	9.8	4	94	0	69	53	0	0	46	1.00
71899--72006	20	5.5	19	72	14	85	36	23	16	24	1.94
71998--72143	20	7.4	19	83	6	98	39	25	14	21	1.91
71935--72064	38	3.3	38	81	14	140	38	25	17	18	1.92
72072--72182	39	2.8	40	83	6	129	36	21	11	30	1.89
72088--72182	19	4.9	19	85	5	120	35	20	11	32	1.88
72156--72202	18	2.5	19	82	6	60	29	23	14	31	1.95
72339--72377	16	2.5	15	84	8	51	28	5	0	66	1.12
72963--72996	12	2.8	12	90	0	50	55	29	0	14	1.40
73108--73163	24	2.3	24	87	0	76	30	19	14	35	1.91
73346--73391	23	2.0	24	91	4	76	58	13	21	6	1.57
75413--75453	18	2.3	18	91	0	64	56	21	2	19	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75822--75870	20	2.5	20	93	0	80	20	18	22	38	1.93
75924--76068	68	2.2	67	90	6	226	51	18	1	28	1.55
77412--77474	21	3.0	21	76	0	63	19	23	39	17	1.92
77673--77713	4	10.5	4	84	5	57	73	2	0	24	0.96
77677--77713	19	1.9	19	88	0	56	72	2	0	24	0.97

Tables:   1

The End!