genome.fa.s6603.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006603.1 Hibiscus syriacus cultivar Beakdansim tig00016197_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111206

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
787--864	31	2.5	30	76	13	77	53	15	10	20	1.70
14377--14419	21	2.0	21	86	0	59	53	18	2	25	1.56
16167--16209	19	2.3	19	84	8	52	20	25	0	53	1.46
17873--17916	20	2.2	20	95	0	79	31	38	0	29	1.58
21945--22028	40	2.1	40	93	0	141	36	14	9	39	1.78
24022--24165	65	2.2	66	87	1	200	32	21	14	31	1.93
25858--25911	27	2.0	27	88	0	81	22	7	24	46	1.77
26743--26803	23	2.7	23	97	0	113	32	21	19	26	1.97
27176--27226	21	2.3	23	77	12	63	11	31	1	54	1.47
28068--28110	21	2.0	21	86	0	59	48	9	11	30	1.71
31774--31858	22	3.9	22	66	6	64	28	22	21	28	1.99
33009--33038	11	2.7	11	100	0	60	20	0	10	70	1.16
33811--33971	60	2.7	60	84	0	196	32	23	4	38	1.76
34091--34263	60	2.9	58	81	8	170	39	4	21	34	1.72
38251--38330	31	2.5	32	86	12	119	60	0	0	40	0.97
38316--38348	2	16.5	2	100	0	66	51	0	0	48	1.00
38271--38334	29	2.2	28	82	17	87	62	0	0	37	0.95
42583--42627	24	2.0	22	86	8	63	11	6	8	73	1.25
44616--44724	23	4.7	24	78	6	100	63	20	8	8	1.48
44652--44723	34	2.2	33	87	2	99	65	20	6	6	1.41
44669--44738	24	2.9	23	83	12	70	65	22	4	7	1.35
45393--45489	20	4.8	20	83	2	131	15	22	22	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45579--45676	6	16.3	6	100	0	196	33	48	17	0	1.47
54670--55099	22	19.6	22	84	2	506	43	0	9	46	1.38
55123--55181	31	1.9	31	96	0	109	44	6	5	44	1.52
55734--55786	25	2.1	25	89	0	79	30	5	9	54	1.55
55991--56025	15	2.4	14	90	4	52	28	0	0	71	0.86
62231--62275	21	2.1	21	87	0	63	31	28	24	15	1.96
63293--63318	2	13.0	2	100	0	52	50	0	0	50	1.00
63967--64047	22	3.6	22	93	1	135	19	27	28	24	1.99
68487--68527	6	6.7	6	88	5	64	65	14	2	17	1.37
72924--72948	13	1.9	13	100	0	50	20	48	8	24	1.76
77606--77713	42	2.6	43	89	2	166	26	18	18	36	1.94
77598--78101	38	12.8	38	80	4	506	24	19	18	38	1.93
77598--78101	80	6.4	77	82	5	516	24	19	18	38	1.93
78571--78622	3	18.3	3	77	18	58	28	0	0	71	0.87
78571--78622	19	2.8	19	80	13	63	28	0	0	71	0.87
80047--80199	69	2.2	67	87	11	211	35	2	7	54	1.43
95940--95980	20	2.0	20	85	0	55	58	2	4	34	1.32
96869--96913	21	2.0	24	83	12	60	57	2	0	40	1.11
96863--97222	182	2.0	179	91	3	589	41	3	8	46	1.51
97324--97399	31	2.5	31	100	0	152	34	25	17	23	1.96
97324--97376	17	3.3	17	65	24	51	33	26	16	22	1.96
97726--97773	13	3.6	13	75	5	51	18	16	18	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105506--105579	21	3.5	21	85	3	87	52	10	33	2	1.50
105543--105589	21	2.2	21	88	7	69	59	12	27	0	1.34
109519--109567	19	2.5	19	86	3	62	69	0	8	22	1.14
109609--109649	17	2.3	18	87	4	57	68	2	7	21	1.26

Tables:   1

The End!