genome.fa.s6605.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006605.1 Hibiscus syriacus cultivar Beakdansim tig00016203_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  167702

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3407--3468	27	2.3	27	88	0	88	50	22	8	19	1.74
3772--3812	20	2.1	18	86	13	55	41	4	12	41	1.64
11539--11572	15	2.3	15	94	0	59	8	14	5	70	1.31
13510--13746	43	5.5	43	78	1	215	33	16	22	27	1.95
13510--13732	86	2.6	86	81	2	250	33	15	23	27	1.95
15087--15120	17	1.9	18	88	5	52	35	17	8	38	1.81
15283--15585	59	5.2	57	74	10	188	31	22	10	35	1.87
15338--15585	114	2.1	114	87	4	345	31	22	10	36	1.87
15387--15592	58	3.6	58	75	10	206	30	21	11	36	1.88
22158--22191	17	1.9	18	88	5	52	35	17	8	38	1.81
22329--22567	59	4.1	59	70	15	174	29	24	10	35	1.89
25829--25912	41	2.0	41	88	0	123	28	20	17	33	1.95
28368--28407	21	2.0	21	90	5	64	47	7	12	32	1.69
29633--29725	40	2.3	40	94	0	159	47	3	7	41	1.48
30115--30143	15	1.9	15	100	0	58	27	0	10	62	1.28
30424--30461	20	1.9	20	89	10	60	50	15	5	28	1.66
38014--38051	19	2.1	18	85	9	51	63	10	7	18	1.50
38781--38817	14	2.9	14	84	15	53	72	0	5	21	1.04
39279--39347	25	2.7	26	84	8	79	57	2	2	36	1.28
51868--52270	114	3.5	114	90	2	614	28	15	26	29	1.96
60209--60246	14	2.7	14	95	0	67	28	0	21	50	1.49
60204--60244	14	2.6	16	77	18	50	29	0	14	56	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64529--64566	19	2.1	18	85	9	51	63	10	7	18	1.50
64741--64770	16	1.9	15	93	6	51	60	13	0	26	1.34
71360--71433	37	2.0	37	92	5	123	32	10	8	48	1.67
76054--76088	3	11.7	3	100	0	70	68	0	0	31	0.90
76154--76224	17	4.2	18	66	27	57	40	8	0	50	1.33
76125--76278	46	3.2	48	81	14	178	36	7	0	56	1.27
76146--76212	30	2.2	31	85	12	95	38	5	0	55	1.25
76184--76234	18	2.7	19	84	9	77	37	9	0	52	1.34
76506--77056	181	3.0	180	87	1	780	31	17	20	30	1.96
76866--76945	41	1.9	40	82	7	97	31	18	16	33	1.93
78119--78148	8	3.8	8	95	0	51	0	13	0	86	0.57
78120--78149	15	2.0	15	93	0	51	0	16	0	83	0.65
78868--78897	15	1.9	16	93	6	53	56	0	16	26	1.40
79298--79342	19	2.4	19	100	0	90	17	11	31	40	1.85
81191--81251	24	2.5	24	82	10	63	32	22	16	27	1.96
82194--82226	9	3.8	9	88	8	50	24	24	21	30	1.99
82202--82245	19	2.4	19	85	7	56	22	27	22	27	1.99
82283--82359	21	3.7	21	98	0	145	24	25	27	22	2.00
89142--89185	21	2.1	21	86	0	61	9	40	15	34	1.79
89698--89726	2	14.5	2	100	0	58	48	0	0	51	1.00
90234--90394	66	2.5	63	82	8	182	29	21	20	27	1.98
91918--91973	29	1.9	29	82	7	69	7	17	3	71	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92677--92721	19	2.4	19	100	0	90	17	11	31	40	1.85
98056--98088	3	11.0	3	87	12	50	66	0	3	30	1.06
98054--98082	15	1.9	15	100	0	58	68	0	3	27	1.05
98054--98093	21	2.0	20	90	5	62	70	0	2	27	1.01
98156--98310	42	3.6	42	80	14	174	41	10	1	46	1.47
98236--98307	23	3.3	23	70	21	82	40	13	1	44	1.53
98127--98310	89	2.1	90	86	10	254	41	9	1	48	1.42
98226--98303	18	4.0	18	77	18	84	39	14	1	44	1.53
98310--98353	15	2.9	15	80	12	54	68	15	4	11	1.36
108468--108559	11	7.9	12	77	15	52	7	15	0	77	0.98
108536--108567	11	3.0	11	95	4	57	0	25	0	75	0.81
108526--108551	8	3.2	8	100	0	52	0	23	0	76	0.78
108487--108584	19	5.3	18	77	13	78	4	16	0	79	0.88
108458--108574	63	1.9	63	84	10	161	6	15	0	77	0.96
111858--111906	24	2.0	24	96	0	89	42	12	10	34	1.76
114770--114874	41	2.5	42	86	3	151	26	13	23	36	1.92
117457--117496	6	6.7	6	94	0	71	50	0	0	50	1.00
120668--120806	72	1.9	72	88	0	206	23	19	15	42	1.88
121236--121292	29	2.0	28	82	3	69	19	10	14	56	1.67
124091--124182	7	13.1	7	69	8	53	28	1	26	44	1.61
125623--125674	2	26.0	2	100	0	104	50	0	0	50	1.00
125696--125742	20	2.2	21	88	7	69	34	6	4	55	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125984--126043	29	2.1	28	87	3	84	33	3	16	46	1.64
126039--126118	35	2.3	35	78	8	83	48	3	5	42	1.42
126183--126237	21	2.8	20	73	15	53	43	18	3	34	1.67
126311--126402	2	46.0	2	100	0	184	50	0	0	50	1.00
127344--127370	13	2.1	13	100	0	54	37	7	25	29	1.83
133075--133124	22	2.3	23	80	16	61	24	0	18	58	1.40
150800--151017	108	2.0	109	99	0	429	34	22	16	27	1.95
151351--151401	27	1.9	26	96	4	93	19	15	19	45	1.86
153092--153586	245	2.0	245	93	0	846	35	21	10	31	1.88
157019--157070	14	3.6	15	84	7	63	21	19	32	26	1.97
157167--157206	18	2.2	18	100	0	80	55	12	7	25	1.63
159788--159819	15	2.1	15	100	0	64	37	34	0	28	1.57
163054--163096	22	2.0	22	85	0	59	51	11	4	32	1.59

Tables:   1

The End!