genome.fa.s6606.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006606.1 Hibiscus syriacus cultivar Beakdansim tig00016207_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88836

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
787--832	14	3.6	14	75	24	57	45	17	0	36	1.49
788--877	23	3.9	24	73	18	93	44	15	1	38	1.54
802--1088	103	2.8	104	81	12	355	45	12	0	41	1.44
847--982	58	2.4	59	85	10	176	45	13	0	41	1.43
907--1028	48	2.7	46	86	11	155	45	12	0	42	1.41
1053--1089	11	3.1	12	88	11	58	40	10	0	48	1.38
995--1085	11	7.8	11	70	20	53	43	12	0	43	1.41
1156--1203	14	3.6	14	78	16	57	47	14	0	37	1.44
1155--1203	25	2.0	25	91	0	80	46	14	0	38	1.44
1175--1224	21	2.3	22	86	10	68	52	6	0	42	1.26
1175--1296	47	2.6	47	87	7	160	47	10	0	41	1.38
1277--1358	25	3.3	25	70	14	80	47	13	0	39	1.43
1276--1396	49	2.4	49	91	1	188	46	14	0	39	1.44
1171--1447	109	2.6	106	93	2	457	47	11	0	40	1.40
1326--1447	59	2.1	59	92	3	201	45	13	0	40	1.44
707--1673	377	2.6	374	91	6	1534	44	12	3	40	1.58
1533--1580	14	3.6	14	81	16	66	47	16	0	35	1.47
1532--1580	25	2.0	25	95	0	89	46	16	0	36	1.47
1532--1590	25	2.6	21	86	10	64	49	13	0	37	1.43
1548--1673	58	2.1	60	91	2	202	47	11	0	41	1.39
1666--1727	7	7.9	8	70	22	51	50	12	0	37	1.41
1607--1786	25	7.3	25	69	14	124	46	13	1	37	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1534--1885	133	2.6	134	75	14	352	46	13	0	39	1.48
1666--1787	14	8.6	14	71	22	87	47	13	2	36	1.57
1754--1888	60	2.2	60	97	0	252	45	14	0	40	1.44
8983--9057	33	2.3	33	97	0	141	9	17	48	25	1.77
10540--10582	21	2.0	21	100	0	86	20	23	13	41	1.88
11040--11097	24	2.4	24	77	5	64	13	13	15	56	1.67
14075--14130	27	2.0	28	86	10	80	41	17	10	30	1.84
14539--14802	60	4.4	60	81	3	271	17	21	26	34	1.95
22542--22580	19	2.1	19	100	0	78	23	15	30	30	1.95
25335--25392	30	1.9	30	96	0	107	24	15	5	55	1.61
30297--30762	54	8.6	54	86	3	575	34	20	18	27	1.96
35700--36110	54	7.6	54	84	0	444	33	19	20	27	1.96
35700--36102	162	2.5	162	84	0	500	33	19	19	27	1.96
39411--39461	3	17.0	3	100	0	102	66	0	0	33	0.92
41897--41978	29	2.8	28	89	7	119	34	6	6	53	1.50
41860--41972	58	2.0	56	81	15	133	36	4	7	51	1.51
41992--42042	26	2.0	26	88	0	75	33	7	13	45	1.73
46146--46250	37	2.8	37	82	0	129	40	14	11	34	1.82
46742--46779	20	1.9	20	88	0	58	26	7	2	63	1.35
51462--51530	8	8.4	8	76	10	50	82	5	11	0	0.83
51463--51543	24	3.2	24	76	13	74	81	6	11	1	0.92
51468--51530	11	5.6	11	78	14	58	82	4	12	0	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51465--51530	21	3.4	19	76	15	64	81	6	12	0	0.85
51469--51543	7	10.7	7	75	11	55	81	5	12	1	0.92
52149--52203	22	2.5	22	93	0	92	38	21	14	25	1.92
52618--52654	18	2.0	19	94	5	67	18	5	32	43	1.73
53028--53554	106	5.0	104	85	5	663	33	24	18	23	1.97
53028--53554	206	2.5	209	84	5	676	33	24	18	23	1.97
54285--54389	37	2.8	37	85	0	138	40	15	13	31	1.85
55074--55114	18	2.4	18	80	8	50	24	9	0	65	1.22
57896--57962	27	2.6	26	75	13	75	58	4	1	35	1.28
61673--61932	62	4.3	61	86	8	345	40	24	19	15	1.91
61673--61940	20	13.2	20	80	10	244	40	24	19	15	1.90
62036--62108	6	12.5	6	97	1	123	30	53	16	0	1.43
63730--63929	58	3.5	57	85	6	242	41	14	7	37	1.72
64117--64264	45	3.3	46	79	8	162	40	15	8	35	1.77
70093--70166	36	2.1	35	94	2	130	33	28	18	18	1.95
71423--71488	7	10.0	7	77	12	68	30	12	21	36	1.90
71440--71488	19	2.6	19	100	0	98	30	12	24	32	1.92
80988--81189	98	2.1	99	91	0	325	41	13	9	36	1.77
87190--87243	27	2.0	27	85	0	72	38	12	40	7	1.72

Tables:   1

The End!