Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006607.1 Hibiscus syriacus cultivar Beakdansim tig00016212_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1995858
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 8 of 8
Found at i:1770897 original size:59 final size:60
Alignment explanation
Indices: 1770805--1770922 Score: 159
Period size: 59 Copynumber: 2.0 Consensus size: 60
1770795 ACCCTAGTAT
* ** * * *
1770805 ACACATAAGGTCGTGCCCACCATCTGCACTAGTTGT-ACTTTAGTGCAGTCCTGAATATG
1 ACACATAAGATCGTGCCCACCATAAGCACTAGTTATAACTTTAGTGCAATCCCGAATATG
1770864 ACACATAAGATCGT-CTCCACCATAAGCACTAGTTATAACTTTAGTGCAATCCCGAATAT
1 ACACATAAGATCGTGC-CCACCATAAGCACTAGTTATAACTTTAGTGCAATCCCGAATAT
1770923 ACAACCTGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
58 1 0.02
59 30 0.59
60 20 0.39
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (60 bp):
ACACATAAGATCGTGCCCACCATAAGCACTAGTTATAACTTTAGTGCAATCCCGAATATG
Found at i:1773415 original size:13 final size:13
Alignment explanation
Indices: 1773383--1773420 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
1773373 CCAATCACTA
*
1773383 AGTCAACTCAGTTT
1 AGTCAACTCA-TTG
1773397 AGTCAACTCATTG
1 AGTCAACTCATTG
1773410 AGTCAACTCAT
1 AGTCAACTCAT
1773421 AGACTTTGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 13 0.57
14 10 0.43
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (13 bp):
AGTCAACTCATTG
Found at i:1775275 original size:31 final size:31
Alignment explanation
Indices: 1775218--1775277 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
1775208 CCTCGAGATT
*
1775218 TTTCTTGGGTAGGCCCTATGGCCCCAAGAAC
1 TTTCTTGGGTAGGCCCTATGGACCCAAGAAC
* *
1775249 TTTCTTTGGTAGGCTCT-TAGGACCCAAGA
1 TTTCTTGGGTAGGCCCTAT-GGACCCAAGA
1775278 TGCTCCCTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 1 0.04
31 24 0.96
ACGTcount: A:0.20, C:0.25, G:0.25, T:0.30
Consensus pattern (31 bp):
TTTCTTGGGTAGGCCCTATGGACCCAAGAAC
Found at i:1783014 original size:56 final size:56
Alignment explanation
Indices: 1782910--1783355 Score: 632
Period size: 56 Copynumber: 8.0 Consensus size: 56
1782900 ACTAACAATA
* * * * *
1782910 CATAAATTCA-TAT-AATTTCTTAATTTATGCATACAAAGTGTCCATACGAAAATT
1 CATAAACTCATTATGAATTTCTTAGTTTTTGCACACAAAGTGCCCATACGAAAATT
* *
1782964 CTTAAACTCATTATGAATTTCTTAGTTTTTGCACACAAAGTGCCCCTACGAAAATT
1 CATAAACTCATTATGAATTTCTTAGTTTTTGCACACAAAGTGCCCATACGAAAATT
* * *
1783020 CATAAATTCATTATGAGTTTCTTAGTTTTTGCACACATAAAGTGTCCATAC-AGAAATT
1 CATAAACTCATTATGAATTTCTTAGTTTTTGCACAC--AAAGTGCCCATACGA-AAATT
* *
1783078 CATAAACTCATTATGAATTTCTTAGTTTTT-CACACAAAGTGTCCATACGGAAATT
1 CATAAACTCATTATGAATTTCTTAGTTTTTGCACACAAAGTGCCCATACGAAAATT
* * *
1783133 CATAAACTCGTTATGAATTTCTTAGTTTTTGCAAACAAAGTGCCCATACGGAAATT
1 CATAAACTCATTATGAATTTCTTAGTTTTTGCACACAAAGTGCCCATACGAAAATT
* * *
1783189 CAAAAACTCGTTATGAATTTCTTAGTTTTTGCACACAAAGTGCCCATACGGAAATT
1 CATAAACTCATTATGAATTTCTTAGTTTTTGCACACAAAGTGCCCATACGAAAATT
*
1783245 CATAAACT-AGTTATTAATTTCTTAGTTTTTGCACACAAAGTGCCCATACGAAAATT
1 CATAAACTCA-TTATGAATTTCTTAGTTTTTGCACACAAAGTGCCCATACGAAAATT
* *
1783301 CATAAACTCATTATGAATTTCTTAGGTTTTGCACACAAAGTGCCTATACGAAAAT
1 CATAAACTCATTATGAATTTCTTAGTTTTTGCACACAAAGTGCCCATACGAAAAT
1783356 CACCATACAT
Statistics
Matches: 356, Mismatches: 27, Indels: 16
0.89 0.07 0.04
Matches are distributed among these distances:
54 8 0.02
55 50 0.14
56 247 0.69
57 7 0.02
58 44 0.12
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (56 bp):
CATAAACTCATTATGAATTTCTTAGTTTTTGCACACAAAGTGCCCATACGAAAATT
Found at i:1783717 original size:19 final size:19
Alignment explanation
Indices: 1783690--1783730 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
1783680 GTATCGATAC
* *
1783690 TACTATATTATGGTACTGA
1 TACTATATTACGGTACCGA
*
1783709 TACTCTATTACGGTACCGA
1 TACTATATTACGGTACCGA
1783728 TAC
1 TAC
1783731 CATTTCTGCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.37
Consensus pattern (19 bp):
TACTATATTACGGTACCGA
Found at i:1787373 original size:59 final size:59
Alignment explanation
Indices: 1787274--1787410 Score: 177
Period size: 59 Copynumber: 2.3 Consensus size: 59
1787264 CAGCAGGCTG
* ** * *
1787274 CATATTCGGGAATACACTAAAGTATACCTAGTGTATATGGTGGGCACGACCTTATGTGT
1 CATATTCGGGAATACACTAAAGGATACCTAGTACAGATGGTGGACACGACCTTATGTGT
* ** *
1787333 CATATTCGGGACTGTACTTAAGGATACCTAGTACAGATGGTGGACACGACCTTATGTGT
1 CATATTCGGGAATACACTAAAGGATACCTAGTACAGATGGTGGACACGACCTTATGTGT
1787392 CATATTCGGG-ATAGCACTA
1 CATATTCGGGAATA-CACTA
1787411 CTGTGCTTAT
Statistics
Matches: 64, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
58 1 0.02
59 63 0.98
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (59 bp):
CATATTCGGGAATACACTAAAGGATACCTAGTACAGATGGTGGACACGACCTTATGTGT
Found at i:1787603 original size:47 final size:45
Alignment explanation
Indices: 1787511--1787636 Score: 157
Period size: 47 Copynumber: 2.8 Consensus size: 45
1787501 GTAAGCATAC
* * *
1787511 AAATAAGCTTACAAGCTTTTGGATT-AATGGCAAGTATATGGGTA
1 AAATAAGCTTACGAGCTTATGGATTAAATGGTAAGTATATGGGTA
* *
1787555 AAATAAGCTTACGAGCTTATGGAATTTAAATGGTAAGTATTTTGGTA
1 AAATAAGCTTACGAGCTTATGG-A-TTAAATGGTAAGTATATGGGTA
*
1787602 AAATAAGCTTTCGAGCTTATGGGA-TAAATGGTAAG
1 AAATAAGCTTACGAGCTTAT-GGATTAAATGGTAAG
1787637 GGATTTTATA
Statistics
Matches: 72, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
44 20 0.28
45 12 0.17
46 2 0.03
47 36 0.50
48 2 0.03
ACGTcount: A:0.37, C:0.08, G:0.23, T:0.33
Consensus pattern (45 bp):
AAATAAGCTTACGAGCTTATGGATTAAATGGTAAGTATATGGGTA
Found at i:1789114 original size:95 final size:95
Alignment explanation
Indices: 1788951--1789140 Score: 380
Period size: 95 Copynumber: 2.0 Consensus size: 95
1788941 TGGTTCTCCA
1788951 ATCCAATCACATTTAAATGATCTACCACTCACAAATATCTCATAAAGTTATACATCTGAAGATAA
1 ATCCAATCACATTTAAATGATCTACCACTCACAAATATCTCATAAAGTTATACATCTGAAGATAA
1789016 CATTAATTACTAGAAAAATAAGCACAAACT
66 CATTAATTACTAGAAAAATAAGCACAAACT
1789046 ATCCAATCACATTTAAATGATCTACCACTCACAAATATCTCATAAAGTTATACATCTGAAGATAA
1 ATCCAATCACATTTAAATGATCTACCACTCACAAATATCTCATAAAGTTATACATCTGAAGATAA
1789111 CATTAATTACTAGAAAAATAAGCACAAACT
66 CATTAATTACTAGAAAAATAAGCACAAACT
1789141 CATATTTAAG
Statistics
Matches: 95, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
95 95 1.00
ACGTcount: A:0.46, C:0.20, G:0.06, T:0.27
Consensus pattern (95 bp):
ATCCAATCACATTTAAATGATCTACCACTCACAAATATCTCATAAAGTTATACATCTGAAGATAA
CATTAATTACTAGAAAAATAAGCACAAACT
Found at i:1790167 original size:22 final size:22
Alignment explanation
Indices: 1790139--1790187 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
1790129 GTGTGGATGG
*
1790139 AATTGAACAGTCGAATTAATGT
1 AATTGAACAGTCGAATTAATGA
* *
1790161 AATTGAATAGTCGAATTGATGA
1 AATTGAACAGTCGAATTAATGA
1790183 AATTG
1 AATTG
1790188 GTTGTCTGCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.41, C:0.06, G:0.20, T:0.33
Consensus pattern (22 bp):
AATTGAACAGTCGAATTAATGA
Found at i:1796772 original size:17 final size:16
Alignment explanation
Indices: 1796750--1796783 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
1796740 TAAAAATAGT
1796750 AAATAAAAAGATAAATA
1 AAATAAAAAGA-AAATA
*
1796767 AAATAAGAAGAAAATA
1 AAATAAAAAGAAAATA
1796783 A
1 A
1796784 TCCTCACGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (16 bp):
AAATAAAAAGAAAATA
Found at i:1797299 original size:24 final size:24
Alignment explanation
Indices: 1797255--1797304 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
1797245 ATAAAGAACC
*
1797255 AAAATAAACTTAAATATACCATTA
1 AAAATAAACTTAAACATACCATTA
*
1797279 AAAATAAAGTTTAAACA-ACCATTA
1 AAAATAAA-CTTAAACATACCATTA
1797303 AA
1 AA
1797305 TCAACCACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 17 0.74
25 6 0.26
ACGTcount: A:0.60, C:0.12, G:0.02, T:0.26
Consensus pattern (24 bp):
AAAATAAACTTAAACATACCATTA
Found at i:1800595 original size:19 final size:20
Alignment explanation
Indices: 1800573--1800616 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
1800563 GAGAAAAGGT
1800573 AAAAGTTAA-AATGAAAGAG
1 AAAAGTTAATAATGAAAGAG
* *
1800592 AAAAATTAATAATGAAAGAT
1 AAAAGTTAATAATGAAAGAG
1800612 AAAAG
1 AAAAG
1800617 AAAAAGTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.66, C:0.00, G:0.16, T:0.18
Consensus pattern (20 bp):
AAAAGTTAATAATGAAAGAG
Found at i:1806963 original size:17 final size:16
Alignment explanation
Indices: 1806941--1806974 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
1806931 TAAAAACAGT
1806941 AAATAAAAAGATAAATA
1 AAATAAAAAGA-AAATA
*
1806958 AAATAAGAAGAAAATA
1 AAATAAAAAGAAAATA
1806974 A
1 A
1806975 TCCTCACGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (16 bp):
AAATAAAAAGAAAATA
Found at i:1807493 original size:24 final size:24
Alignment explanation
Indices: 1807449--1807498 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
1807439 ATAAATAACC
*
1807449 AAAATAAACTTAAATATACCATTA
1 AAAATAAACTTAAACATACCATTA
*
1807473 AAAATAAAGTTTAAACA-ACCATTA
1 AAAATAAA-CTTAAACATACCATTA
1807497 AA
1 AA
1807499 TCAACCACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 17 0.74
25 6 0.26
ACGTcount: A:0.60, C:0.12, G:0.02, T:0.26
Consensus pattern (24 bp):
AAAATAAACTTAAACATACCATTA
Found at i:1818741 original size:678 final size:678
Alignment explanation
Indices: 1817444--1818801 Score: 2716
Period size: 678 Copynumber: 2.0 Consensus size: 678
1817434 GTTCGACCAC
1817444 ATGAGGAAGGTAATTCTACAACATACACTGGTAATTTGAATAGAATATGGTGCGATTGTGGTCGA
1 ATGAGGAAGGTAATTCTACAACATACACTGGTAATTTGAATAGAATATGGTGCGATTGTGGTCGA
1817509 TTTCAAGCTTTTAGGTTCCCATGCGCTCACGTTGTTGCTGCATGTATACACATCAATGTTGACCC
66 TTTCAAGCTTTTAGGTTCCCATGCGCTCACGTTGTTGCTGCATGTATACACATCAATGTTGACCC
1817574 ATACTTATATACTGATGACTATTATAGCTTGCACACTATGCGCAAAATTTACAGTTGTGACTTCA
131 ATACTTATATACTGATGACTATTATAGCTTGCACACTATGCGCAAAATTTACAGTTGTGACTTCA
1817639 AGTACCTCCCAAATGAAGCATACTGGCCTACATGCACAATTTCTGAGGAATGGTTTCCAAATCCT
196 AGTACCTCCCAAATGAAGCATACTGGCCTACATGCACAATTTCTGAGGAATGGTTTCCAAATCCT
1817704 CAATTGCGTAAGAAGTTACGGGGTCGACCTGAATCTAGCCGAATTCATACCGATATGGATGATTC
261 CAATTGCGTAAGAAGTTACGGGGTCGACCTGAATCTAGCCGAATTCATACCGATATGGATGATTC
1817769 TCAAAGAGAGTCAGGTCAACCAAAACTTTGTGGCCACTGCAGAGGTGAAGGTCATAACAGAAAAC
326 TCAAAGAGAGTCAGGTCAACCAAAACTTTGTGGCCACTGCAGAGGTGAAGGTCATAACAGAAAAC
1817834 ATTGTTCACATCTTCCAAAATATCGTGTTGGACGCTAAAGTAAGCGTTACAAAATGTTGAATTAT
391 ATTGTTCACATCTTCCAAAATATCGTGTTGGACGCTAAAGTAAGCGTTACAAAATGTTGAATTAT
1817899 ATTTTGATATAACAATTAAGGCATAATGTTTTTTGACTTGAATTGAATTTGTTCAAGGTTTTCAA
456 ATTTTGATATAACAATTAAGGCATAATGTTTTTTGACTTGAATTGAATTTGTTCAAGGTTTTCAA
1817964 AGTTTTCAAAAATAATTCAAAGTTCATTTTACTTGGAATTGAGCACAAAATACGTTTTTGTACAA
521 AGTTTTCAAAAATAATTCAAAGTTCATTTTACTTGGAATTGAGCACAAAATACGTTTTTGTACAA
1818029 CCAGTACCGATAATGTTTTGACAGCATCGATACCTCATACACAATACCGATATTATTAATATGGT
586 CCAGTACCGATAATGTTTTGACAGCATCGATACCTCATACACAATACCGATATTATTAATATGGT
1818094 ATTGATACCAAAAGAAATTGAAGTATCG
651 ATTGATACCAAAAGAAATTGAAGTATCG
1818122 ATGAGGAAGGTAATTCTACAACATACACTGGTAATTTGAATAGAATATGGTGCGATTGTGGTCGA
1 ATGAGGAAGGTAATTCTACAACATACACTGGTAATTTGAATAGAATATGGTGCGATTGTGGTCGA
1818187 TTTCAAGCTTTTAGGTTCCCATGCGCTCACGTTGTTGCTGCATGTATACACATCAATGTTGACCC
66 TTTCAAGCTTTTAGGTTCCCATGCGCTCACGTTGTTGCTGCATGTATACACATCAATGTTGACCC
1818252 ATACTTATATACTGATGACTATTATAGCTTGCACACTATGCGCAAAATTTACAGTTGTGACTTCA
131 ATACTTATATACTGATGACTATTATAGCTTGCACACTATGCGCAAAATTTACAGTTGTGACTTCA
1818317 AGTACCTCCCAAATGAAGCATACTGGCCTACATGCACAATTTCTGAGGAATGGTTTCCAAATCCT
196 AGTACCTCCCAAATGAAGCATACTGGCCTACATGCACAATTTCTGAGGAATGGTTTCCAAATCCT
1818382 CAATTGCGTAAGAAGTTACGGGGTCGACCTGAATCTAGCCGAATTCATACCGATATGGATGATTC
261 CAATTGCGTAAGAAGTTACGGGGTCGACCTGAATCTAGCCGAATTCATACCGATATGGATGATTC
1818447 TCAAAGAGAGTCAGGTCAACCAAAACTTTGTGGCCACTGCAGAGGTGAAGGTCATAACAGAAAAC
326 TCAAAGAGAGTCAGGTCAACCAAAACTTTGTGGCCACTGCAGAGGTGAAGGTCATAACAGAAAAC
1818512 ATTGTTCACATCTTCCAAAATATCGTGTTGGACGCTAAAGTAAGCGTTACAAAATGTTGAATTAT
391 ATTGTTCACATCTTCCAAAATATCGTGTTGGACGCTAAAGTAAGCGTTACAAAATGTTGAATTAT
1818577 ATTTTGATATAACAATTAAGGCATAATGTTTTTTGACTTGAATTGAATTTGTTCAAGGTTTTCAA
456 ATTTTGATATAACAATTAAGGCATAATGTTTTTTGACTTGAATTGAATTTGTTCAAGGTTTTCAA
1818642 AGTTTTCAAAAATAATTCAAAGTTCATTTTACTTGGAATTGAGCACAAAATACGTTTTTGTACAA
521 AGTTTTCAAAAATAATTCAAAGTTCATTTTACTTGGAATTGAGCACAAAATACGTTTTTGTACAA
1818707 CCAGTACCGATAATGTTTTGACAGCATCGATACCTCATACACAATACCGATATTATTAATATGGT
586 CCAGTACCGATAATGTTTTGACAGCATCGATACCTCATACACAATACCGATATTATTAATATGGT
1818772 ATTGATACCAAAAGAAATTGAAGTATCG
651 ATTGATACCAAAAGAAATTGAAGTATCG
1818800 AT
1 AT
1818802 ACTCACAAGG
Statistics
Matches: 680, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
678 680 1.00
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (678 bp):
ATGAGGAAGGTAATTCTACAACATACACTGGTAATTTGAATAGAATATGGTGCGATTGTGGTCGA
TTTCAAGCTTTTAGGTTCCCATGCGCTCACGTTGTTGCTGCATGTATACACATCAATGTTGACCC
ATACTTATATACTGATGACTATTATAGCTTGCACACTATGCGCAAAATTTACAGTTGTGACTTCA
AGTACCTCCCAAATGAAGCATACTGGCCTACATGCACAATTTCTGAGGAATGGTTTCCAAATCCT
CAATTGCGTAAGAAGTTACGGGGTCGACCTGAATCTAGCCGAATTCATACCGATATGGATGATTC
TCAAAGAGAGTCAGGTCAACCAAAACTTTGTGGCCACTGCAGAGGTGAAGGTCATAACAGAAAAC
ATTGTTCACATCTTCCAAAATATCGTGTTGGACGCTAAAGTAAGCGTTACAAAATGTTGAATTAT
ATTTTGATATAACAATTAAGGCATAATGTTTTTTGACTTGAATTGAATTTGTTCAAGGTTTTCAA
AGTTTTCAAAAATAATTCAAAGTTCATTTTACTTGGAATTGAGCACAAAATACGTTTTTGTACAA
CCAGTACCGATAATGTTTTGACAGCATCGATACCTCATACACAATACCGATATTATTAATATGGT
ATTGATACCAAAAGAAATTGAAGTATCG
Found at i:1818975 original size:107 final size:107
Alignment explanation
Indices: 1818787--1819059 Score: 339
Period size: 107 Copynumber: 2.6 Consensus size: 107
1818777 TACCAAAAGA
* * * **
1818787 AATTGAAGTATCGATACTCACAAGGTAATATCGATACTACCATCATTTCTCAAATTCCAGGACGA
1 AATTGAAGTATCGATACTCACAAGGTAATATCGATACTACTAACATTGCTCAAATTCCAAAACGA
* * *
1818852 AAAAATGGTACCGATACGCAAAGGGGTACCGATAGAAAAGGT
66 AAAAATGGTACCGATACCCAAAGGGCTACCGATACAAAAGGT
* ** * * *
1818894 AATTGAAGTATCGACACTCACAAGGTGGTATCAATACTACTAACATTGCTCAAATTCCAAAATGC
1 AATTGAAGTATCGATACTCACAAGGTAATATCGATACTACTAACATTGCTCAAATTCCAAAACGA
** * *
1818959 AAAAATGGTATTGATACCCAAAGGGCTACCGATACCAAATGT
66 AAAAATGGTACCGATACCCAAAGGGCTACCGATACAAAAGGT
* * * * *
1819001 AATGGAAGTATGGATACTCACAAGGTACTATTGATACTACTAGCATTGCTCAAATTCCA
1 AATTGAAGTATCGATACTCACAAGGTAATATCGATACTACTAACATTGCTCAAATTCCA
1819060 GAATAAAATA
Statistics
Matches: 140, Mismatches: 26, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
107 140 1.00
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (107 bp):
AATTGAAGTATCGATACTCACAAGGTAATATCGATACTACTAACATTGCTCAAATTCCAAAACGA
AAAAATGGTACCGATACCCAAAGGGCTACCGATACAAAAGGT
Found at i:1820702 original size:17 final size:17
Alignment explanation
Indices: 1820680--1820714 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
1820670 CAACGGTCAC
*
1820680 GGTCAACGGTCGGGTCG
1 GGTCAACGATCGGGTCG
1820697 GGTCAACGATCGGGTCG
1 GGTCAACGATCGGGTCG
1820714 G
1 G
1820715 TCAGGTCGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.14, C:0.23, G:0.46, T:0.17
Consensus pattern (17 bp):
GGTCAACGATCGGGTCG
Found at i:1827882 original size:5 final size:5
Alignment explanation
Indices: 1827872--1827925 Score: 65
Period size: 5 Copynumber: 10.6 Consensus size: 5
1827862 ACGGTCAACA
* *
1827872 GTCGG GTCGG GTCGG GTCAACG ATCGG GTCGG GTCGG GTC-G GTCGG GTCGG
1 GTCGG GTCGG GTCGG GTC--GG GTCGG GTCGG GTCGG GTCGG GTCGG GTCGG
1827923 GTC
1 GTC
1827926 AGACCGGTTC
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
4 4 0.10
5 35 0.83
7 3 0.07
ACGTcount: A:0.06, C:0.22, G:0.52, T:0.20
Consensus pattern (5 bp):
GTCGG
Found at i:1827892 original size:22 final size:22
Alignment explanation
Indices: 1827864--1827911 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
1827854 CAACGGTCAC
1827864 GGTCAAC-AGTCGGGTCGGGTCG
1 GGTCAACGA-TCGGGTCGGGTCG
1827886 GGTCAACGATCGGGTCGGGTCG
1 GGTCAACGATCGGGTCGGGTCG
1827908 GGTC
1 GGTC
1827912 GGTCGGGTCG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
22 24 0.96
23 1 0.04
ACGTcount: A:0.12, C:0.23, G:0.46, T:0.19
Consensus pattern (22 bp):
GGTCAACGATCGGGTCGGGTCG
Found at i:1827917 original size:14 final size:14
Alignment explanation
Indices: 1827898--1827925 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
1827888 TCAACGATCG
1827898 GGTCGGGTCGGGTC
1 GGTCGGGTCGGGTC
1827912 GGTCGGGTCGGGTC
1 GGTCGGGTCGGGTC
1827926 AGACCGGTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.00, C:0.21, G:0.57, T:0.21
Consensus pattern (14 bp):
GGTCGGGTCGGGTC
Found at i:1829394 original size:20 final size:20
Alignment explanation
Indices: 1829371--1829410 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
1829361 ATTGAACTCT
1829371 CAATTTAATTTAATATTTCA
1 CAATTTAATTTAATATTTCA
1829391 CAATTTAATTTAATATTTCA
1 CAATTTAATTTAATATTTCA
1829411 ATAACTTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (20 bp):
CAATTTAATTTAATATTTCA
Found at i:1829852 original size:26 final size:26
Alignment explanation
Indices: 1829823--1829872 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
1829813 AAATTACATT
*
1829823 TCTAGTACCTAAACTATCAGTTTTGA
1 TCTAGTACCTAAACTATCAATTTTGA
*
1829849 TCTAGTACCTAAACTTTCAATTTT
1 TCTAGTACCTAAACTATCAATTTT
1829873 TTAAAGTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.42
Consensus pattern (26 bp):
TCTAGTACCTAAACTATCAATTTTGA
Found at i:1836245 original size:13 final size:14
Alignment explanation
Indices: 1836229--1836266 Score: 62
Period size: 12 Copynumber: 2.9 Consensus size: 14
1836219 AATGTTAATA
1836229 TTTTTTAATATTAT
1 TTTTTTAATATTAT
1836243 TTTTTTAA-A-TAT
1 TTTTTTAATATTAT
1836255 TTTTTTAATATT
1 TTTTTTAATATT
1836267 TTTGATAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 11 0.50
13 2 0.09
14 9 0.41
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTTTTAATATTAT
Found at i:1836255 original size:12 final size:12
Alignment explanation
Indices: 1836225--1836269 Score: 58
Period size: 11 Copynumber: 3.8 Consensus size: 12
1836215 CAAAAATGTT
1836225 AATA-TTTTTTA
1 AATATTTTTTTA
1836236 ATATTATTTTTTTA
1 A-A-TATTTTTTTA
1836250 AATATTTTTTT-
1 AATATTTTTTTA
1836261 AATATTTTT
1 AATATTTTT
1836270 GATAAAATGT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
11 10 0.32
12 10 0.32
13 3 0.10
14 8 0.26
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
AATATTTTTTTA
Found at i:1836277 original size:25 final size:25
Alignment explanation
Indices: 1836225--1836277 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
1836215 CAAAAATGTT
** *
1836225 AATATTTTTTAATATTATTTTTTTA
1 AATATTTTTTAATATTATTTGATAA
1836250 AATATTTTTTTAATATT-TTTGATAA
1 AATA-TTTTTTAATATTATTTGATAA
1836275 AAT
1 AAT
1836278 GTTACTTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (25 bp):
AATATTTTTTAATATTATTTGATAA
Found at i:1836333 original size:34 final size:34
Alignment explanation
Indices: 1836285--1836351 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
1836275 AATGTTACTT
*
1836285 AAAATATTATTTTTAA-TCATAAATATTAATATTA
1 AAAATATTATTTTTAAGTAATAAA-ATTAATATTA
*
1836319 AAAATATT-TATTTTAAGTAATGAAATTAATATT
1 AAAATATTAT-TTTTAAGTAATAAAATTAATATT
1836352 TTTAATAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
33 1 0.03
34 23 0.79
35 5 0.17
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.46
Consensus pattern (34 bp):
AAAATATTATTTTTAAGTAATAAAATTAATATTA
Found at i:1838292 original size:21 final size:22
Alignment explanation
Indices: 1838261--1838303 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
1838251 TTTCCAAGCA
1838261 TTTTGACTCAAAGAATCGATCT
1 TTTTGACTCAAAGAATCGATCT
* *
1838283 TTTTGA-TCAAAGGATCTATCT
1 TTTTGACTCAAAGAATCGATCT
1838304 CCTTGTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40
Consensus pattern (22 bp):
TTTTGACTCAAAGAATCGATCT
Found at i:1838716 original size:23 final size:23
Alignment explanation
Indices: 1838686--1838737 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
1838676 GAAGATTACA
*
1838686 CATACCCTTGTTTGGTTTAAAAG
1 CATACCCTTGTTTGGTTCAAAAG
1838709 CATACCCTTGTTTGGTTCAAAAG
1 CATACCCTTGTTTGGTTCAAAAG
1838732 CATACC
1 CATACC
1838738 TTTTAATGGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (23 bp):
CATACCCTTGTTTGGTTCAAAAG
Found at i:1846349 original size:23 final size:23
Alignment explanation
Indices: 1846296--1846429 Score: 161
Period size: 23 Copynumber: 5.9 Consensus size: 23
1846286 CAGATTGTAA
1846296 TTTGCACCGAAGTG-C-CATAGG
1 TTTGCACCGAAGTGCCACATAGG
*
1846317 ATTAT-C-CCGAAG-GAGCACATAGG
1 -TT-TGCACCGAAGTG-CCACATAGG
*
1846340 TTTGCACCGAAGTGCCATATAGG
1 TTTGCACCGAAGTGCCACATAGG
*
1846363 TTTGCACCGAAGTGCCATATAGG
1 TTTGCACCGAAGTGCCACATAGG
1846386 TTTGCACCGAAGTGCCACATAGG
1 TTTGCACCGAAGTGCCACATAGG
* *
1846409 TTTGCATCGAAGTGTCACATA
1 TTTGCACCGAAGTGCCACATA
1846430 ATTGTCCCGA
Statistics
Matches: 100, Mismatches: 5, Indels: 13
0.85 0.04 0.11
Matches are distributed among these distances:
20 1 0.01
21 7 0.07
22 7 0.07
23 84 0.84
24 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.25
Consensus pattern (23 bp):
TTTGCACCGAAGTGCCACATAGG
Found at i:1847278 original size:55 final size:55
Alignment explanation
Indices: 1847219--1847365 Score: 222
Period size: 55 Copynumber: 2.7 Consensus size: 55
1847209 CGAAATTGCA
* * * * *
1847219 AGGGTATCAATACACTCCTCAGTGTATCGATACAGAATTGGCACTCGATGTTTTG
1 AGGGTATCGATACACTCCTCAGTGTACCGATACACAAATAGCACTCGATGTTTTG
* *
1847274 AGGGTATCGATACATTCTTCAGTGTACCGATACACAAATAGCACTCGATGTTTTG
1 AGGGTATCGATACACTCCTCAGTGTACCGATACACAAATAGCACTCGATGTTTTG
*
1847329 AGGGTATGGATACACTCCTCAGTGTACCGATACACAA
1 AGGGTATCGATACACTCCTCAGTGTACCGATACACAA
1847366 TCATTTAATT
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
55 82 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (55 bp):
AGGGTATCGATACACTCCTCAGTGTACCGATACACAAATAGCACTCGATGTTTTG
Found at i:1848284 original size:9 final size:9
Alignment explanation
Indices: 1848270--1848298 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
1848260 AGCTTCTAGG
1848270 TTTCTTAAT
1 TTTCTTAAT
1848279 TTTCTTAAT
1 TTTCTTAAT
1848288 TTTCTTAAT
1 TTTCTTAAT
1848297 TT
1 TT
1848299 GACACTTAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.21, C:0.10, G:0.00, T:0.69
Consensus pattern (9 bp):
TTTCTTAAT
Found at i:1854622 original size:20 final size:20
Alignment explanation
Indices: 1854597--1854638 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
1854587 AAAAGCCTAA
1854597 CATTTCACCTTTACATCTAC
1 CATTTCACCTTTACATCTAC
1854617 CATTTCACCTTTACATCTAC
1 CATTTCACCTTTACATCTAC
1854637 CA
1 CA
1854639 CCAAACCATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.26, C:0.36, G:0.00, T:0.38
Consensus pattern (20 bp):
CATTTCACCTTTACATCTAC
Found at i:1859407 original size:27 final size:28
Alignment explanation
Indices: 1859368--1859429 Score: 85
Period size: 27 Copynumber: 2.3 Consensus size: 28
1859358 TTCATTTGAA
*
1859368 TATTATT-TATATTATTATTA-TAATAAT
1 TATTATTATATATT-TTATTATTAATAAG
1859395 TATTATTAT-TATTTTATTATTAATAAG
1 TATTATTATATATTTTATTATTAATAAG
1859422 TATTATTA
1 TATTATTA
1859430 CAAGCCTAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 6 0.19
27 25 0.78
28 1 0.03
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.60
Consensus pattern (28 bp):
TATTATTATATATTTTATTATTAATAAG
Found at i:1859429 original size:3 final size:3
Alignment explanation
Indices: 1859368--1859416 Score: 57
Period size: 3 Copynumber: 16.7 Consensus size: 3
1859358 TTCATTTGAA
* *
1859368 TAT TAT T-T ATAT TAT TAT TAT AAT AAT TAT TAT TAT TAT T-T TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1859412 TAT TA
1 TAT TA
1859417 ATAAGTATTA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
2 3 0.07
3 37 0.90
4 1 0.02
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:1860782 original size:2 final size:2
Alignment explanation
Indices: 1860775--1860804 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
1860765 TTACTTAATC
1860775 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1860805 TATTTATTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1872698 original size:19 final size:18
Alignment explanation
Indices: 1872634--1872704 Score: 65
Period size: 19 Copynumber: 3.8 Consensus size: 18
1872624 ATTTATTAAT
1872634 AAATTCTAAGTTTATTTTCTG
1 AAATTC-AA-TTTATTTTC-G
1872655 TAAATTCAATTTA-TTT-G
1 -AAATTCAATTTATTTTCG
*
1872672 AGATTCAATTTATTTTCG
1 AAATTCAATTTATTTTCG
*
1872690 AAAATTCAACTTATT
1 -AAATTCAATTTATT
1872705 CTTTTATTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
16 11 0.26
17 4 0.09
18 1 0.02
19 15 0.35
20 4 0.09
21 2 0.05
22 6 0.14
ACGTcount: A:0.34, C:0.10, G:0.07, T:0.49
Consensus pattern (18 bp):
AAATTCAATTTATTTTCG
Found at i:1874031 original size:112 final size:112
Alignment explanation
Indices: 1873864--1874612 Score: 1112
Period size: 112 Copynumber: 6.7 Consensus size: 112
1873854 TCAATATTTT
*
1873864 CAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTAATAATGAGAAGAAC
1 CAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAAC
* * **
1873929 TTGTTCAACTTTTTGCTTAAATTCATCCCTCGGTGGATCAACATTTT
66 TTGTTCAACTTTTTGCTTAAATTCATCACTCGGTGGATCAACAGTGC
1873976 CAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAAC
1 CAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAAC
* * *
1874041 TTGTTTAACTTTTTGCTTAAATTCATCCCTCGGTGGATCAGCAGTGC
66 TTGTTCAACTTTTTGCTTAAATTCATCACTCGGTGGATCAACAGTGC
*
1874088 CAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAAAAGTTCATAATGAGAAGAAC
1 CAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAAC
* * *
1874153 TTGTTCAACTTTTTGCTTAAATTCATCAATTGGTGGATCAGCAGTGC
66 TTGTTCAACTTTTTGCTTAAATTCATCACTCGGTGGATCAACAGTGC
*
1874200 CAGTTAGAGTTCATAATGAGAAGAACTCATCTAAAGAAGAAGAAGAAGTTCATAATGAGAAGAAC
1 CAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAAC
* **
1874265 TTGTTCAACTTTTTGCTTAAATTCATCACTCGGTGAATCAGTAGTGC
66 TTGTTCAACTTTTTGCTTAAATTCATCACTCGGTGGATCAACAGTGC
* * *
1874312 CAGTTAGAGTTCATAATGAAAAGAACTCATATGAAGAAGAAGAAGAAGTTAATAATGAGAAGAAC
1 CAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAAC
* * *
1874377 GTGTTCAACTTTTTGCTTAAATTCATCACTCGGCGGATTAACAGTGC
66 TTGTTCAACTTTTTGCTTAAATTCATCACTCGGTGGATCAACAGTGC
*
1874424 CAGTTAGAGTTCATAATGAAAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAAC
1 CAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAAC
* * * * ** *
1874489 ---TTC--CCTTTTACTTAAATTCATCACTTGATGGATCAACTTTTC
66 TTGTTCAACTTTTTGCTTAAATTCATCACTCGGTGGATCAACAGTGC
* ** * * *
1874531 TAGAGAAAGTTCATAATGAGAAGAACTCATCCGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAG
1 CAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAA-GAAGAAGAAGTTCATAATGAGAAGAA
* *
1874596 CTTGTTCGACCTTTTGC
65 CTTGTTCAACTTTTTGC
1874613 ATGACACTAT
Statistics
Matches: 585, Mismatches: 46, Indels: 11
0.91 0.07 0.02
Matches are distributed among these distances:
107 62 0.11
108 26 0.04
109 3 0.01
111 3 0.01
112 484 0.83
113 7 0.01
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (112 bp):
CAGTTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCATAATGAGAAGAAC
TTGTTCAACTTTTTGCTTAAATTCATCACTCGGTGGATCAACAGTGC
Found at i:1874984 original size:24 final size:24
Alignment explanation
Indices: 1874949--1875009 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 24
1874939 TCATTTGAAT
1874949 ATTATT-TATATTATTATTATTA-TA
1 ATTATTAT-TATTATT-TTATTATTA
1874973 ATTATTATTATTATTTTATTATTA
1 ATTATTATTATTATTTTATTATTA
* *
1874997 ATAAGTATTATTA
1 ATTATTATTATTA
1875010 CAAGCCTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
23 6 0.18
24 26 0.79
25 1 0.03
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (24 bp):
ATTATTATTATTATTTTATTATTA
Found at i:1875009 original size:3 final size:3
Alignment explanation
Indices: 1874948--1874996 Score: 66
Period size: 3 Copynumber: 16.7 Consensus size: 3
1874938 TTCATTTGAA
*
1874948 TAT TAT T-T ATAT TAT TAT TAT TAT AAT TAT TAT TAT TAT T-T TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1874992 TAT TA
1 TAT TA
1874997 ATAAGTATTA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
2 3 0.07
3 37 0.90
4 1 0.02
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:1879220 original size:13 final size:12
Alignment explanation
Indices: 1879202--1879241 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
1879192 GTCAAAGGAA
1879202 GTCAACGGTCACG
1 GTCAACGGTC-CG
*
1879215 GTCAACGGTCGG
1 GTCAACGGTCCG
*
1879227 GTCAACGGTTCG
1 GTCAACGGTCCG
1879239 GTC
1 GTC
1879242 GGGTCAGGTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
12 14 0.58
13 10 0.42
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (12 bp):
GTCAACGGTCCG
Found at i:1879283 original size:19 final size:19
Alignment explanation
Indices: 1879259--1879311 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 19
1879249 GTCGGGTCTG
*
1879259 ACCGGTCAAACTGGTTC-A
1 ACCGGTCAAACCGGTTCGA
*
1879277 GATCGGTCAAACCGGTTCGA
1 -ACCGGTCAAACCGGTTCGA
1879297 ACCGGTCAAACCGGT
1 ACCGGTCAAACCGGT
1879312 CAAAACCGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
19 29 0.97
20 1 0.03
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.19
Consensus pattern (19 bp):
ACCGGTCAAACCGGTTCGA
Found at i:1879308 original size:9 final size:9
Alignment explanation
Indices: 1879259--1879341 Score: 67
Period size: 9 Copynumber: 8.7 Consensus size: 9
1879249 GTCGGGTCTG
1879259 ACCGGTCAA
1 ACCGGTCAA
* *
1879268 ACTGGTTCAG
1 ACCGG-TCAA
*
1879278 ATCGGTCAA
1 ACCGGTCAA
*
1879287 ACCGGTTCGA
1 ACCGG-TCAA
1879297 ACCGGTCAA
1 ACCGGTCAA
1879306 ACCGGTCAAA
1 ACCGGTC-AA
* *
1879316 ACCGATTGAAA
1 ACCG-GT-CAA
1879327 ACCGGTCAA
1 ACCGGTCAA
1879336 ACCGGT
1 ACCGGT
1879342 TTTCCAACAG
Statistics
Matches: 57, Mismatches: 12, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
9 29 0.51
10 21 0.37
11 7 0.12
ACGTcount: A:0.31, C:0.28, G:0.24, T:0.17
Consensus pattern (9 bp):
ACCGGTCAA
Found at i:1879318 original size:19 final size:18
Alignment explanation
Indices: 1879259--1879341 Score: 67
Period size: 19 Copynumber: 4.3 Consensus size: 18
1879249 GTCGGGTCTG
* *
1879259 ACCGGTCAAACTGGTTCAG
1 ACCGGTCAAACCGG-TCAA
* *
1879278 ATCGGTCAAACCGGTTCGA
1 ACCGGTCAAACCGG-TCAA
1879297 ACCGGTCAAACCGGTCAAA
1 ACCGGTCAAACCGGTC-AA
* *
1879316 ACCGATTGAAAACCGGTCAA
1 ACCG-GT-CAAACCGGTCAA
1879336 ACCGGT
1 ACCGGT
1879342 TTTCCAACAG
Statistics
Matches: 52, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
18 2 0.04
19 34 0.65
20 7 0.13
21 9 0.17
ACGTcount: A:0.31, C:0.28, G:0.24, T:0.17
Consensus pattern (18 bp):
ACCGGTCAAACCGGTCAA
Found at i:1886464 original size:19 final size:19
Alignment explanation
Indices: 1886440--1886481 Score: 68
Period size: 19 Copynumber: 2.2 Consensus size: 19
1886430 GTCGGGTATG
1886440 ACCGGTC-AAACCGGTTCGA
1 ACCGGTCAAAACCGG-TCGA
1886459 ACCGGTCAAAACCGGTCGA
1 ACCGGTCAAAACCGGTCGA
1886478 ACCG
1 ACCG
1886482 ATTTTCCAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.29, C:0.33, G:0.26, T:0.12
Consensus pattern (19 bp):
ACCGGTCAAAACCGGTCGA
Found at i:1889309 original size:79 final size:79
Alignment explanation
Indices: 1889211--1889369 Score: 291
Period size: 79 Copynumber: 2.0 Consensus size: 79
1889201 AACCATAAAA
1889211 GGGATCAAGCTACTAAAAGAACACTAACAACCACAAATCAAACTCAAGAGACGTGAAAAGCTATC
1 GGGATCAAGCTACTAAAAGAACACTAACAACCACAAATCAAACTCAAGAGACGTGAAAAGCTATC
1889276 CACGAACGCATAAC
66 CACGAACGCATAAC
* * *
1889290 GGGATCAAGCTACTGAAAGAACACTAACAACCGCAAATCAAACTCAAGCGACGTGAAAAGCTATC
1 GGGATCAAGCTACTAAAAGAACACTAACAACCACAAATCAAACTCAAGAGACGTGAAAAGCTATC
1889355 CACGAACGCATAAC
66 CACGAACGCATAAC
1889369 G
1 G
1889370 AGTACCCAAA
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
79 77 1.00
ACGTcount: A:0.45, C:0.26, G:0.17, T:0.13
Consensus pattern (79 bp):
GGGATCAAGCTACTAAAAGAACACTAACAACCACAAATCAAACTCAAGAGACGTGAAAAGCTATC
CACGAACGCATAAC
Found at i:1895328 original size:26 final size:26
Alignment explanation
Indices: 1895293--1895360 Score: 109
Period size: 26 Copynumber: 2.6 Consensus size: 26
1895283 AGTTAGGTGA
1895293 TATTCTTGGTCATTTCCATACCAGGGG
1 TATT-TTGGTCATTTCCATACCAGGGG
**
1895320 TATTTTGGTCATTTTTATACCAGGGG
1 TATTTTGGTCATTTCCATACCAGGGG
1895346 TATTTTGGTCATTTC
1 TATTTTGGTCATTTC
1895361 ATAGATACAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
26 34 0.89
27 4 0.11
ACGTcount: A:0.18, C:0.16, G:0.21, T:0.46
Consensus pattern (26 bp):
TATTTTGGTCATTTCCATACCAGGGG
Found at i:1896425 original size:20 final size:20
Alignment explanation
Indices: 1896400--1896448 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
1896390 GAAATTACAT
1896400 AAAAACGGAGCTTAATTCTG
1 AAAAACGGAGCTTAATTCTG
1896420 AAAAACGGAGCTTAATTCTG
1 AAAAACGGAGCTTAATTCTG
1896440 AAAAACGGA
1 AAAAACGGA
1896449 TCGAATCGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.45, C:0.14, G:0.20, T:0.20
Consensus pattern (20 bp):
AAAAACGGAGCTTAATTCTG
Found at i:1898053 original size:21 final size:18
Alignment explanation
Indices: 1898009--1898043 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
1897999 GAAATTACTT
1898009 CCCCTTACTTTAACACTC
1 CCCCTTACTTTAACACTC
1898027 CCCCTTACTTTAACACT
1 CCCCTTACTTTAACACT
1898044 TCTCCCCCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.43, G:0.00, T:0.34
Consensus pattern (18 bp):
CCCCTTACTTTAACACTC
Found at i:1898190 original size:13 final size:13
Alignment explanation
Indices: 1898172--1898196 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1898162 AGCCATTAGT
1898172 TTCATAATCAATA
1 TTCATAATCAATA
1898185 TTCATAATCAAT
1 TTCATAATCAAT
1898197 GTGTAATGGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.40
Consensus pattern (13 bp):
TTCATAATCAATA
Found at i:1903320 original size:12 final size:12
Alignment explanation
Indices: 1903303--1903327 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1903293 AGATGCAATG
1903303 TCAAACAATTTT
1 TCAAACAATTTT
1903315 TCAAACAATTTT
1 TCAAACAATTTT
1903327 T
1 T
1903328 TTAAAATAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (12 bp):
TCAAACAATTTT
Found at i:1905547 original size:21 final size:21
Alignment explanation
Indices: 1905521--1905570 Score: 100
Period size: 21 Copynumber: 2.4 Consensus size: 21
1905511 TGGAGTGTGG
1905521 GGGAATCGGTACCCCTTCATA
1 GGGAATCGGTACCCCTTCATA
1905542 GGGAATCGGTACCCCTTCATA
1 GGGAATCGGTACCCCTTCATA
1905563 GGGAATCG
1 GGGAATCG
1905571 ATTCTTGCAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.22
Consensus pattern (21 bp):
GGGAATCGGTACCCCTTCATA
Found at i:1910048 original size:20 final size:20
Alignment explanation
Indices: 1910020--1910093 Score: 130
Period size: 20 Copynumber: 3.7 Consensus size: 20
1910010 AGGTAAAAAT
1910020 ATGACAAAACCGGTCTCAAA
1 ATGACAAAACCGGTCTCAAA
*
1910040 ATGATAAAACCGGTCTCAAA
1 ATGACAAAACCGGTCTCAAA
*
1910060 ATGATAAAACCGGTCTCAAA
1 ATGACAAAACCGGTCTCAAA
1910080 ATGACAAAACCGGT
1 ATGACAAAACCGGT
1910094 AAAATGCTGC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.45, C:0.22, G:0.16, T:0.18
Consensus pattern (20 bp):
ATGACAAAACCGGTCTCAAA
Found at i:1910523 original size:183 final size:182
Alignment explanation
Indices: 1910060--1910680 Score: 935
Period size: 182 Copynumber: 3.4 Consensus size: 182
1910050 CGGTCTCAAA
* *
1910060 ATGATAAAACCGGTCTCAAAATGACAAAACCGGTAAAATGCTGCCGGATATGTTGAAAGTGTCGA
1 ATGATAAAACCGGTCTCAAAATGACAAAACCGGTAAAAAGCTACCGGATATGTTGAAAGTGTCGA
* * *
1910125 TAATTTAATATAAGTATCGAGACTTTCT-GAATTTAAAAGAGAAAAAGTTATAGCGCCTAAAAAG
66 TAATTTAATATAAGTATCGACACTTT-TGGAATTTAAAAGAGAAGAAGTTATAGCGCCTATAAAG
* * * * *
1910189 TTTCGACACTTTATGAAAATATATCGATCCATAACAATATAACAA-CTAAAAAT
130 TGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAA-AAGGTAAAAAT
* *
1910242 ATGACAAAACCGGTCTCAAAATGACAAAACAGGTAAATAA-CTACCGGATATGTTGAAAGTGTCG
1 ATGATAAAACCGGTCTCAAAATGACAAAACCGGTAAA-AAGCTACCGGATATGTTGAAAGTGTCG
* * * *
1910306 ATACTTTAATATAAGTGTTGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGTGCCTATAAAG
65 ATAATTTAATATAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCTATAAAG
*
1910371 TGTCGATACTTTAAAAAAATGTATCGATCCATAACAATATAAAAGGTAAAAAT
130 TGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAAAAGGTAAAAAT
** *
1910424 ATGATAAAACATGTCTCAAAAATGACAAAACCGGTAAAAAGATACCGGATATGTTGAAAGTGTCG
1 ATGATAAAACCGGTCTC-AAAATGACAAAACCGGTAAAAAGCTACCGGATATGTTGAAAGTGTCG
*
1910489 AAAATTTAATATAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCTATAAAG
65 ATAATTTAATATAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCTATAAAG
* *
1910554 TGTCAATACTTT-TAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAT
130 TGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAAAAGGTAAAAAT
* **
1910606 ATGATAAATCCGGTCTCAAAATGACAAAACCGGTAAAGCGCTACCGGATATGTTGAAAGTGTCGA
1 ATGATAAAACCGGTCTCAAAATGACAAAACCGGTAAAAAGCTACCGGATATGTTGAAAGTGTCGA
*
1910671 TACTTTAATA
66 TAATTTAATA
1910681 AGTACACGTA
Statistics
Matches: 396, Mismatches: 38, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
181 56 0.14
182 226 0.57
183 114 0.29
ACGTcount: A:0.43, C:0.13, G:0.17, T:0.27
Consensus pattern (182 bp):
ATGATAAAACCGGTCTCAAAATGACAAAACCGGTAAAAAGCTACCGGATATGTTGAAAGTGTCGA
TAATTTAATATAAGTATCGACACTTTTGGAATTTAAAAGAGAAGAAGTTATAGCGCCTATAAAGT
GTCGATACTTTATAAAAATGTATCGATCCATAACAATATAAAAGGTAAAAAT
Found at i:1911090 original size:19 final size:19
Alignment explanation
Indices: 1911068--1911129 Score: 106
Period size: 19 Copynumber: 3.3 Consensus size: 19
1911058 CTTTTATTTA
*
1911068 ATATTATATGTAAAAAATG
1 ATATTATAGGTAAAAAATG
1911087 ATATTATAGGTAAAAAATG
1 ATATTATAGGTAAAAAATG
*
1911106 ATATTATAGGTAGAAAATG
1 ATATTATAGGTAAAAAATG
1911125 ATATT
1 ATATT
1911130 TTAGTGTATA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 41 1.00
ACGTcount: A:0.50, C:0.00, G:0.15, T:0.35
Consensus pattern (19 bp):
ATATTATAGGTAAAAAATG
Found at i:1911142 original size:19 final size:18
Alignment explanation
Indices: 1911068--1911143 Score: 89
Period size: 19 Copynumber: 4.0 Consensus size: 18
1911058 CTTTTATTTA
*
1911068 ATATTATATGTAAAAAATG
1 ATATTATAGGT-AAAAATG
1911087 ATATTATAGGTAAAAAATG
1 ATATTATAGGT-AAAAATG
1911106 ATATTATAGGTAGAAAATG
1 ATATTATAGGTA-AAAATG
* *
1911125 ATATTTTAGTGTATAAATG
1 ATATTATAG-GTAAAAATG
1911144 TGCCGACACT
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
18 1 0.02
19 48 0.92
20 3 0.06
ACGTcount: A:0.47, C:0.00, G:0.16, T:0.37
Consensus pattern (18 bp):
ATATTATAGGTAAAAATG
Found at i:1912433 original size:22 final size:22
Alignment explanation
Indices: 1912383--1912437 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 22
1912373 AATTTTTTTG
1912383 TTTT-TTATATAAAATGATAGTA
1 TTTTATTATATAAAATGATAG-A
*
1912405 TAGTTATTATATAAAATGATA-A
1 T-TTTATTATATAAAATGATAGA
1912427 CTTTTATTATA
1 -TTTTATTATA
1912438 AATGTAAGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
22 10 0.36
23 3 0.11
24 15 0.54
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (22 bp):
TTTTATTATATAAAATGATAGA
Found at i:1914639 original size:19 final size:19
Alignment explanation
Indices: 1914615--1914664 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
1914605 AAATGTAGGG
1914615 TTAATTTTGTATAAGATTT
1 TTAATTTTGTATAAGATTT
*
1914634 TTAATTTTGTATACGATTT
1 TTAATTTTGTATAAGATTT
*
1914653 ATAATTTTGTAT
1 TTAATTTTGTAT
1914665 GTGAATGTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.30, C:0.02, G:0.10, T:0.58
Consensus pattern (19 bp):
TTAATTTTGTATAAGATTT
Found at i:1915379 original size:199 final size:199
Alignment explanation
Indices: 1915034--1916928 Score: 2889
Period size: 199 Copynumber: 9.5 Consensus size: 199
1915024 GTAAACTTAT
* *
1915034 GTGTCGATACATTTACAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
* *
1915099 GGTAAATTAACAATGTAACCGGTCTAAATATACCGGATTTTGAGAAAACAGGTGTACAAAAAATA
66 GGTAAATTAACAATGTAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTA
* * * *
1915164 TCGACACAACTAAAACAAGTGTCGATACTTTTGGTCCATAATTTATTTCAAAACCAGGTGCACTA
131 TCGACACAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
1915229 AAAA
196 AAAA
* * * * *
1915233 GTGTCGATAAATTTATAACATGTGTCGATCCCAAAAACATCAAAACCCATAATTATGATTTAATA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
* * *
1915298 GGTAAATTAATAATTTAACCGGTCTAAATATACCGGTTTTTTAGAAAACAGGTGTACAAAAAGTA
66 GGTAAATTAACAATGTAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTA
*
1915363 TCGACACAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAATCAAGTGCACTA
131 TCGACACAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
1915428 AAAA
196 AAAA
* * *
1915432 GTGTCGATTCATTTATAAGAAGTTTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
* *
1915497 GGTAAATTAGCAATGTAACCGGTCTAAATATACCGGTTTTTTAGAAAACAGGTGTACAAAAAGTA
66 GGTAAATTAACAATGTAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTA
* * ** **
1915562 TCGACATAACTAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCTTAACCAAGTGCACGG
131 TCGACACAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
1915627 AAAA
196 AAAA
* *
1915631 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGGAACCCATAATTATGATGTAATA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
* * *
1915696 GGTAAATTAAAAATTTAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGGA
66 GGTAAATTAACAATGTAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTA
*
1915761 TCGACACAAATAAAACAAGTGTCAATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
131 TCGACACAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
1915826 AAAA
196 AAAA
*
1915830 GTGTCGATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
* * * *
1915895 GGTAAATTAGCAATGTAACCAGTCTAAATATGCCAGTTTTTGAGAAAACAGGTGTACAAAAAGTA
66 GGTAAATTAACAATGTAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTA
* * ** *
1915960 TCGACACAACTAAAACAAGTGTCGATACTTTTGGTCCATAATGTATTTCTTAACCAAATGCAC-A
131 TCGACACAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
1916024 GAAAA
196 -AAAA
* * ** * *
1916029 GTGTTGATACATTTATAACAAGTGCCGATCCCAAAAGTATCGAAACCCATAAATATGATGTAATA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
* * *
1916094 GGTAAATTAGCAATTTAACCGATCTAAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTA
66 GGTAAATTAACAATGTAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTA
*
1916159 TCGACACAAATAAAACAAGTGTCGATACTTTTGGTCCATAATGTATTTCAAAACCAAGTGCACTA
131 TCGACACAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
1916224 AAAA
196 AAAA
* *
1916228 GTGTCGATACATTTATAAGAAGTGTCGATCCCAAAAACATCAAAACCCATAATTATAATGTAATA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
* * *
1916293 GGTAAATTAGCAATGTAACCGGTCTAAATATACCGGTTTTTGAGAAAACAAGTGTTCAAAAAGTA
66 GGTAAATTAACAATGTAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTA
* * ** *
1916358 TCGACACAACTAAAACAAGTGTCGATAGTTTTGGTCCAGAATGTATTTCTTAACCAAGTGCACGA
131 TCGACACAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
1916423 AAAA
196 AAAA
* * *
1916427 GGGTTGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATGATGTAATA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
* * *
1916492 GGTAAATTAACAATTTAACTGGTCTAAATATACCAG-TTTTGAGAAAACAGGTGTACAAAAAGTA
66 GGTAAATTAACAATGTAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTA
*
1916556 TCGACACAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACGAAGTGCACTA
131 TCGACACAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
1916621 AAAA
196 AAAA
*
1916625 GTGTCGATACATTTATAAGAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
* * * * * * *
1916690 GGTAAATTAACAATGTAACCAGTCTAAATATATCAGTTTATGAGAAAGCAGGTATACATAAAGTA
66 GGTAAATTAACAATGTAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTA
** * * *
1916755 TCGACACAAATCCAACAAGTGTCGATACTCTTT-GTCCACAGTGTATTTTAAAAACCAAGTGCAC
131 TCGACACAAATAAAACAAGTGTCGATACT-TTTGGTCCAGAATGTA-TTTCAAAACCAAGTGCAC
1916819 -AACAAA
194 TAA-AAA
* * * * * *
1916825 GTTTCGATATATTTATAACAAGTGTCGATCCGAAAAATATTGAAACTCATAATTATAATGTAATA
1 GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
* * *
1916890 GGTAAATTAACAATGTAACCGGTATAAAAATACTGGTTT
66 GGTAAATTAACAATGTAACCGGTCTAAATATACCGGTTT
1916929 AATTTGAAAA
Statistics
Matches: 1540, Mismatches: 150, Indels: 11
0.91 0.09 0.01
Matches are distributed among these distances:
198 183 0.12
199 1243 0.81
200 114 0.07
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.28
Consensus pattern (199 bp):
GTGTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATA
GGTAAATTAACAATGTAACCGGTCTAAATATACCGGTTTTTGAGAAAACAGGTGTACAAAAAGTA
TCGACACAAATAAAACAAGTGTCGATACTTTTGGTCCAGAATGTATTTCAAAACCAAGTGCACTA
AAAA
Found at i:1919922 original size:30 final size:30
Alignment explanation
Indices: 1919888--1919959 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 30
1919878 TTTCATTTTC
1919888 ATTTC-ATTTATAATTAGAGTTTGAATTTAA
1 ATTTCAATTTA-AATTAGAGTTTGAATTTAA
* *
1919918 ATTTCAATTTAAGTTTGAGTTTGAATTTAA
1 ATTTCAATTTAAATTAGAGTTTGAATTTAA
* *
1919948 ATGTAAATTTAA
1 ATTTCAATTTAA
1919960 GCTCCATTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
30 32 0.86
31 5 0.14
ACGTcount: A:0.38, C:0.03, G:0.11, T:0.49
Consensus pattern (30 bp):
ATTTCAATTTAAATTAGAGTTTGAATTTAA
Found at i:1919960 original size:30 final size:30
Alignment explanation
Indices: 1919904--1919960 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
1919894 TTTATAATTA
* *
1919904 GAGTTTGAATTTAAATTTCAATTTAAGTTT
1 GAGTTTGAATTTAAATGTAAATTTAAGTTT
1919934 GAGTTTGAATTTAAATGTAAATTTAAG
1 GAGTTTGAATTTAAATGTAAATTTAAG
1919961 CTCCATTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.37, C:0.02, G:0.16, T:0.46
Consensus pattern (30 bp):
GAGTTTGAATTTAAATGTAAATTTAAGTTT
Found at i:1920835 original size:200 final size:199
Alignment explanation
Indices: 1920130--1921120 Score: 1281
Period size: 200 Copynumber: 4.9 Consensus size: 199
1920120 TTATTCATTC
* * * * ** * * *
1920130 GTGTCGATACATGTTGTCCATAATGTA-TTTCCAAACCAACTGCACGAAAAAAGTATCGATACAT
1 GTGTCGATACTTTTTGTCCAGAGTGTATTTTAAAAACCAAGTGCAC-AACAAAGTGTCGATACAT
* * *
1920194 TTATAACAAGTGTCAATACTAAAAACATCGAAACACATAGA-TATAATGTAATAGGTAAAATAAC
65 TTATAACAAGTGTCGAT-CTAAAAACATCGAAACCCATA-ATTATAATGTAATAGGTAAATTAAC
* * * *
1920258 AATGTAACCGGCCTAAATATACCGGTTTTTGAGAAAACATGTATACATAAAGTATCGACACAAGT
128 AATGTAACCGGTCTAAATATACCGGTTTATGAGAAAACAGGTATACATAAAGTATCGACACAAAT
*
1920323 ACAATAA
193 ACAACAA
** * * *
1920330 GTGTCGATACTTTTTGTCCAGCTTGTATTTTATAAACCAAGTGCACTAA-AAAGTGTTGATACGT
1 GTGTCGATACTTTTTGTCCAGAGTGTATTTTAAAAACCAAGTGCAC-AACAAAGTGTCGATACAT
* * * * * * * *
1920394 TTATAACAAGTATCGATACTAAACACATTGAAACACATAAATATTATGTAATAGGTAAAATAGCA
65 TTATAACAAGTGTCGAT-CTAAAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTAACA
** * *
1920459 ATGTAACCGACCTAAATATACCAGTTTTTGAGAAAACAGGTATACATAAAGTATCGACACAAATA
129 ATGTAACCGGTCTAAATATACCGGTTTATGAGAAAACAGGTATACATAAAGTATCGACACAAATA
*
1920524 CAATAA
194 CAACAA
*
1920530 GTGTCGATACTTTTTTGTCCA-ACGTGTATTTTAAAAACCAAGTGCACAACAAAGTGTTGATACA
1 GTGTCGATAC-TTTTTGTCCAGA-GTGTATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACA
* * *
1920594 TTTATAATAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATATAATAGGTAAATTAAC
64 TTTATAACAAGTGTCGAT-CTAAAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTAAC
*
1920659 AATGTAACCGGTCTAAATATACCGGTTTATGAGAAAATAGGTATACATAAAGTATCGACACAAAT
128 AATGTAACCGGTCTAAATATACCGGTTTATGAGAAAACAGGTATACATAAAGTATCGACACAAAT
1920724 GA-AACAA
193 -ACAACAA
* *
1920731 GTGTCGATACTTTTTGTCCATAGTGTATTTTAAAAACCAAGTACACAACAAAGTGTCGATACATT
1 GTGTCGATACTTTTTGTCCAGAGTGTATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATT
*
1920796 TATAACAAGTGTCGATCTGAAGAACATCGAAACCCATAATTATAATGTAATAGGTAAATTAACAA
66 TATAACAAGTGTCGATCT-AAAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTAACAA
* * * * *
1920861 TATAATCGGTCTAAATATACCAGTTTATGAGAAAACATGTATACATAAAGTATCGACACAAATCC
130 TGTAACCGGTCTAAATATACCGGTTTATGAGAAAACAGGTATACATAAAGTATCGACACAAATAC
1920926 AACAA
195 AACAA
* *
1920931 GTGTCGATACTTTTTGTTCAGAGTGTATTTTAAAAACCAAGTGCACAACAAAGTTTCGATACATT
1 GTGTCGATACTTTTTGTCCAGAGTGTATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATT
* * * *
1920996 TATAACAACTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGATAAATTAACAA
66 TATAACAAGTGTCGAT-CTAAAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTAACAA
* * * * * * * *
1921061 TGTAACCGGTTTAAATTTATCGGTTTTATGAGAAGATAGGTCTAAATAATGTATCGACAC
130 TGTAACCGGTCTAAATATACCGG-TTTATGAGAAAACAGGTATACATAAAGTATCGACAC
1921121 TTTATTTATT
Statistics
Matches: 703, Mismatches: 77, Indels: 21
0.88 0.10 0.03
Matches are distributed among these distances:
199 2 0.00
200 479 0.68
201 221 0.31
202 1 0.00
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.29
Consensus pattern (199 bp):
GTGTCGATACTTTTTGTCCAGAGTGTATTTTAAAAACCAAGTGCACAACAAAGTGTCGATACATT
TATAACAAGTGTCGATCTAAAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTAACAAT
GTAACCGGTCTAAATATACCGGTTTATGAGAAAACAGGTATACATAAAGTATCGACACAAATACA
ACAA
Found at i:1920886 original size:401 final size:399
Alignment explanation
Indices: 1920130--1921120 Score: 1330
Period size: 401 Copynumber: 2.5 Consensus size: 399
1920120 TTATTCATTC
* * * * ** * * *
1920130 GTGTCGATACATGTTGTCCATAATGTA-TTTCCAAACCAACTGCACGAAAAAAGTATCGATACAT
1 GTGTCGATACTTTTTGTCCAGAGTGTATTTTAAAAACCAAGTGCAC-AACAAAGT-TTGATACAT
* * * * *
1920194 TTATAACAAGTGTCAATACTAAAAACATCGAAACACATAGA-TATAATGTAATAGGTAAAATAAC
64 TTATAACAAGTGTCGATCCCAAAAACATCGAAACCCATA-ATTATAATGTAATAGGTAAATTAAC
* * * * *
1920258 AATGTAACCGGCCTAAATATACCGGTTTTTGAGAAAACATGTATACATAAAGTATCGACACAAGT
128 AATGTAACCGGTCTAAATATACCGGTTTATGAGAAAATAGGTATACATAAAGTATCGACACAAAT
* ** * * *
1920323 ACAATAAGTGTCGATACTTTTTGTCCAGCTTGTATTTTATAAACCAAGTGCACTAAAAAGTGTTG
193 ACAACAAGTGTCGATACTTTTTGTCCAGAGTGTATTTTAAAAACCAAGTACACTAAAAAGTGTCG
* * *
1920388 ATACGTTTATAACAAGTATCGATACTAAACACATTGAAACACATAAATATTATGTAATAGGTAAA
258 ATACATTTATAACAAGTATCGATACTAAACACATCGAAACACATAAATATAATGTAATAGGTAAA
* * *
1920453 ATAGCAATGTAACCGACCTAAATATACCAGTTTTTGAGAAAACAGGTATACATAAAGTATCGACA
323 ATAACAATATAACCGACCTAAATATACCAGTTTATGAGAAAACAGGTATACATAAAGTATCGACA
*
1920518 CAAATACAATAA
388 CAAATACAACAA
1920530 GTGTCGATACTTTTTTGTCCA-ACGTGTATTTTAAAAACCAAGTGCACAACAAAGTGTTGATACA
1 GTGTCGATAC-TTTTTGTCCAGA-GTGTATTTTAAAAACCAAGTGCACAACAAAGT-TTGATACA
* *
1920594 TTTATAATAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATATAATAGGTAAATTAAC
63 TTTATAACAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTAAC
1920659 AATGTAACCGGTCTAAATATACCGGTTTATGAGAAAATAGGTATACATAAAGTATCGACACAAAT
128 AATGTAACCGGTCTAAATATACCGGTTTATGAGAAAATAGGTATACATAAAGTATCGACACAAAT
*
1920724 GA-AACAAGTGTCGATACTTTTTGTCCATAGTGTATTTTAAAAACCAAGTACAC-AACAAAGTGT
193 -ACAACAAGTGTCGATACTTTTTGTCCAGAGTGTATTTTAAAAACCAAGTACACTAA-AAAGTGT
* * *
1920787 CGATACATTTATAACAAGTGTCGAT-CTGAAGA-ACATCGAAACCCATAATTATAATGTAATAGG
256 CGATACATTTATAACAAGTATCGATACT-AA-ACACATCGAAACACATAAATATAATGTAATAGG
* * ** *
1920850 TAAATTAACAATATAATCGGTCTAAATATACCAGTTTATGAGAAAACATGTATACATAAAGTATC
319 TAAAATAACAATATAACCGACCTAAATATACCAGTTTATGAGAAAACAGGTATACATAAAGTATC
*
1920915 GACACAAATCCAACAA
384 GACACAAATACAACAA
*
1920931 GTGTCGATACTTTTTGTTCAGAGTGTATTTTAAAAACCAAGTGCACAACAAAGTTTCGATACATT
1 GTGTCGATACTTTTTGTCCAGAGTGTATTTTAAAAACCAAGTGCACAACAAAGTTT-GATACATT
* * *
1920996 TATAACAACTATCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGATAAATTAACAA
65 TATAACAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTAACAA
* * * * * * *
1921061 TGTAACCGGTTTAAATTTATCGGTTTTATGAGAAGATAGGTCTAAATAATGTATCGACAC
130 TGTAACCGGTCTAAATATACCGG-TTTATGAGAAAATAGGTATACATAAAGTATCGACAC
1921121 TTTATTTATT
Statistics
Matches: 523, Mismatches: 57, Indels: 21
0.87 0.09 0.03
Matches are distributed among these distances:
399 2 0.00
400 145 0.28
401 359 0.69
402 17 0.03
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.29
Consensus pattern (399 bp):
GTGTCGATACTTTTTGTCCAGAGTGTATTTTAAAAACCAAGTGCACAACAAAGTTTGATACATTT
ATAACAAGTGTCGATCCCAAAAACATCGAAACCCATAATTATAATGTAATAGGTAAATTAACAAT
GTAACCGGTCTAAATATACCGGTTTATGAGAAAATAGGTATACATAAAGTATCGACACAAATACA
ACAAGTGTCGATACTTTTTGTCCAGAGTGTATTTTAAAAACCAAGTACACTAAAAAGTGTCGATA
CATTTATAACAAGTATCGATACTAAACACATCGAAACACATAAATATAATGTAATAGGTAAAATA
ACAATATAACCGACCTAAATATACCAGTTTATGAGAAAACAGGTATACATAAAGTATCGACACAA
ATACAACAA
Found at i:1921187 original size:401 final size:399
Alignment explanation
Indices: 1920162--1921249 Score: 1309
Period size: 401 Copynumber: 2.7 Consensus size: 399
1920152 ATGTATTTCC
* * * * * *
1920162 AAACCAACTGCACGAAAAAAGTATCGATACATTTATAACAAGTGTCAATACTAAAAACATCGAAA
1 AAACCAAGTGCAC-AACAAAGTTTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAA
* * *
1920227 CACATAGA-TATAATGTAATAGGTAAAATAACAATGTAACCGGCCTAAATATACCGGTTTT-TGA
65 CCCATA-ATTATAATGTAATAGGTAAATTAACAATGTAACCGGTCTAAATATACCGGTTTTATGA
* * ***
1920290 GAAAACATGTATACATAAAGTATCGACACA-AGTACAATAAGTGTCGATACTTTTTGTCCAGCTT
129 GAAAATAGGTATACATAAAGTATCGACACATA-TA-AATAAGTGTCGATACTTTTTGTCCATAAT
* * *
1920354 GTATTTTATAAACCAAGTGCA-CTAAAAAGTGTTGATACGTTTATAACAAGTATCGATACTAAAC
192 GTATTTTAAAAACCAAGTGCACCT--AAAGTGTCGATACATTTATAACAAGTATCGAT-CTAAAC
* * * * * *
1920418 ACATTGAAACACATAAATATTATGTAATAGGTAAAATAGCAATGTAACCGACCTAAATATACCAG
254 ACATCGAAACCCATAATTATAATGTAATAGGTAAAATAACAATATAACCGACCTAAATATACCAG
* *
1920483 TTTTTGAGAAAACAGGTATACATAAAGTATCGACACAAATACAATAAGTGTCGATACTTTTTTGT
319 TTTATGAGAAAACAGGTATACATAAAGTATCGACACAAATACAACAAGTGTCGATACTTTTTTGT
1920548 CCAACGTGTATTTTAA
384 CCAACGTGTATTTTAA
*
1920564 AAACCAAGTGCACAACAAAGTGTT-GATACATTTATAATAAGTGTCGATCCCAAAAACATCGAAA
1 AAACCAAGTGCACAACAAAGT-TTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAA
*
1920628 CCCATAATTATAATATAATAGGTAAATTAACAATGTAACCGGTCTAAATATACCGG-TTTATGAG
65 CCCATAATTATAATGTAATAGGTAAATTAACAATGTAACCGGTCTAAATATACCGGTTTTATGAG
* * *
1920692 AAAATAGGTATACATAAAGTATCGACACAAATGAAACAAGTGTCGATACTTTTTGTCCATAGTGT
130 AAAATAGGTATACATAAAGTATCGACACATAT-AAATAAGTGTCGATACTTTTTGTCCATAATGT
* *
1920757 ATTTTAAAAACCAAGTACACAAC-AAAGTGTCGATACATTTATAACAAGTGTCGATCTGAAGA-A
194 ATTTTAAAAACCAAGTGCAC--CTAAAGTGTCGATACATTTATAACAAGTATCGATCT-AA-ACA
* * **
1920820 CATCGAAACCCATAATTATAATGTAATAGGTAAATTAACAATATAATCGGTCTAAATATACCAGT
255 CATCGAAACCCATAATTATAATGTAATAGGTAAAATAACAATATAACCGACCTAAATATACCAGT
* * *
1920885 TTATGAGAAAACATGTATACATAAAGTATCGACACAAATCCAACAAGTGTCGATAC-TTTTTGTT
320 TTATGAGAAAACAGGTATACATAAAGTATCGACACAAATACAACAAGTGTCGATACTTTTTTGTC
1920949 CAGA-GTGTATTTTAA
385 CA-ACGTGTATTTTAA
* *
1920964 AAACCAAGTGCACAACAAAGTTTCGATACATTTATAACAACTATCGATCCCAAAAACATCGAAAC
1 AAACCAAGTGCACAACAAAGTTTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAC
* * * *
1921029 CCATAATTATAATGTAATAGATAAATTAACAATGTAACCGGTTTAAATTTATCGGTTTTATGAGA
66 CCATAATTATAATGTAATAGGTAAATTAACAATGTAACCGGTCTAAATATACCGGTTTTATGAGA
* * * * * ** ** *
1921094 AGATAGGTCTAAATAATGTATCGACACTTTATTTATTTGTGTCGATACTTTTTATCCATAATG-A
131 AAATAGGTATACATAAAGTATCGACAC-ATATAAATAAGTGTCGATACTTTTTGTCCATAATGTA
* *** *** * * *
1921158 ATTCCCAAACTGTGTGCACGCTTAAAGTGTCGATACATTTATTAA-AAGTATCGACCCCAAATAC
195 TTTTAAAAACCAAGTGCAC-C-TAAAGTGTCGATACATTTA-TAACAAGTATCGA-TCTAAACAC
* * *
1921222 ATCGAGACCAAAAATTATAATGTAATAG
256 ATCGAAACCCATAATTATAATGTAATAG
1921250 TTCACTTTAC
Statistics
Matches: 594, Mismatches: 73, Indels: 39
0.84 0.10 0.06
Matches are distributed among these distances:
399 3 0.01
400 148 0.25
401 420 0.71
402 22 0.04
404 1 0.00
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.29
Consensus pattern (399 bp):
AAACCAAGTGCACAACAAAGTTTCGATACATTTATAACAAGTGTCGATCCCAAAAACATCGAAAC
CCATAATTATAATGTAATAGGTAAATTAACAATGTAACCGGTCTAAATATACCGGTTTTATGAGA
AAATAGGTATACATAAAGTATCGACACATATAAATAAGTGTCGATACTTTTTGTCCATAATGTAT
TTTAAAAACCAAGTGCACCTAAAGTGTCGATACATTTATAACAAGTATCGATCTAAACACATCGA
AACCCATAATTATAATGTAATAGGTAAAATAACAATATAACCGACCTAAATATACCAGTTTATGA
GAAAACAGGTATACATAAAGTATCGACACAAATACAACAAGTGTCGATACTTTTTTGTCCAACGT
GTATTTTAA
Found at i:1921429 original size:185 final size:187
Alignment explanation
Indices: 1921081--1921457 Score: 539
Period size: 185 Copynumber: 2.0 Consensus size: 187
1921071 TTAAATTTAT
* *
1921081 CGGTTTTATGAGAAGATAGGTCTAAATAATGTATCGACACTTTATTTATTTGTGTCGATACTTTT
1 CGGTTTTATGAGAAGATAGGTCTAAATAATGTATCGACACTTTATTCATTTGTGTCGATACTTTA
* * * *
1921146 TATCCATAATGAATTCCCAAACTGTGTGCACGCTTAAAGTGTCGATACATTTATTAAAAGTATCG
66 TATCCATAATGAATTCCCAAACCGTGTCCACGCATAAAGTGTCGATACATTTATAAAAAGTATCG
* * *
1921211 ACCCCAAATACATCGAGACCAAAAATTATAATGTAATAGTTCACTTTACAATGTAAC
131 ACCCCAAATACATCAAGACCAAAAATTATAATGTAATAGGTCAATTTACAATGTAAC
* *
1921268 CGGTTTTATGAGCAA-ATAGGTCTACATAATGTATCGATACTTT-TTACATTTGTGTCGATAC-T
1 CGGTTTTATGAG-AAGATAGGTCTAAATAATGTATCGACACTTTATT-CATTTGTGTCGATACTT
* * * *
1921330 TATGTCCATAATTAA-TGCC-AACCGATGTCCACGCATAAAGTTTCGATACATTTATAAAAAGTA
64 TATATCCATAATGAATTCCCAAACCG-TGTCCACGCATAAAGTGTCGATACATTTATAAAAAGTA
*
1921393 TCGACCCCAAATACATCAAGACCAGAAATTATAATGTAATAGGTCAATTTACAATGTAAC
128 TCGACCCCAAATACATCAAGACCAAAAATTATAATGTAATAGGTCAATTTACAATGTAAC
*
1921453 TGGTT
1 CGGTT
1921458 GAAATTTACC
Statistics
Matches: 170, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
184 4 0.02
185 97 0.57
186 15 0.09
187 52 0.31
188 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (187 bp):
CGGTTTTATGAGAAGATAGGTCTAAATAATGTATCGACACTTTATTCATTTGTGTCGATACTTTA
TATCCATAATGAATTCCCAAACCGTGTCCACGCATAAAGTGTCGATACATTTATAAAAAGTATCG
ACCCCAAATACATCAAGACCAAAAATTATAATGTAATAGGTCAATTTACAATGTAAC
Found at i:1925699 original size:23 final size:23
Alignment explanation
Indices: 1925649--1925693 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
1925639 TGCCTATTTT
*
1925649 ATTATATAAGCGCTACCTATTAC
1 ATTATATAAGCGCTACCTAATAC
*
1925672 ATTATATAAGTGCTACCTAATA
1 ATTATATAAGCGCTACCTAATA
1925694 TGTTATTGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.36
Consensus pattern (23 bp):
ATTATATAAGCGCTACCTAATAC
Found at i:1925711 original size:87 final size:87
Alignment explanation
Indices: 1925565--1925727 Score: 290
Period size: 87 Copynumber: 1.9 Consensus size: 87
1925555 AAATAGGTCA
1925565 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTAATTGTACTTGATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTAATTGTACTTGATAATATTT
*
1925630 CCGGTTAAATGCCTATTTTATT
66 CCGGCTAAATGCCTATTTTATT
* * *
1925652 ATATAAGCGCTACCTATTACATTATATAAGTGCTACCTAATATGTTATTGTGCTTGATAATATTT
1 ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTAATTGTACTTGATAATATTT
1925717 CCGGCTAAATG
66 CCGGCTAAATG
1925728 AATAACATAA
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 72 1.00
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (87 bp):
ATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAATATGTAATTGTACTTGATAATATTT
CCGGCTAAATGCCTATTTTATT
Found at i:1931003 original size:33 final size:33
Alignment explanation
Indices: 1930950--1931052 Score: 145
Period size: 33 Copynumber: 3.1 Consensus size: 33
1930940 CATAATGAAC
* *
1930950 ATATCATAGCATGAACTTTCATGGA-AAGAACTT
1 ATATAATAACATGAACTTTCAT-GACAAGAACTT
* * *
1930983 ATATGATAACATGAAATTTCATGATAAGAACTT
1 ATATAATAACATGAACTTTCATGACAAGAACTT
1931016 ATATAATAACATGAACTTTCATGACAAGAACTT
1 ATATAATAACATGAACTTTCATGACAAGAACTT
1931049 ATAT
1 ATAT
1931053 CATATACTTA
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
32 2 0.03
33 61 0.97
ACGTcount: A:0.44, C:0.13, G:0.12, T:0.32
Consensus pattern (33 bp):
ATATAATAACATGAACTTTCATGACAAGAACTT
Found at i:1931033 original size:18 final size:18
Alignment explanation
Indices: 1930977--1931033 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
1930967 TTCATGGAAA
1930977 GAACTTATATGATAACAT
1 GAACTTATATGATAACAT
*
1930995 GAAATT-TCATGAT-A-A-
1 GAACTTAT-ATGATAACAT
*
1931010 GAACTTATATAATAACAT
1 GAACTTATATGATAACAT
1931028 GAACTT
1 GAACTT
1931034 TCATGACAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 10
0.70 0.07 0.23
Matches are distributed among these distances:
15 9 0.29
16 3 0.10
17 3 0.10
18 16 0.52
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.33
Consensus pattern (18 bp):
GAACTTATATGATAACAT
Found at i:1931612 original size:26 final size:26
Alignment explanation
Indices: 1931530--1931612 Score: 71
Period size: 26 Copynumber: 3.2 Consensus size: 26
1931520 CATGTTTTAA
* * *
1931530 TAACACATACTTACACCAGTGAACTTT
1 TAACACGTACTTATACCAATGAAC-TT
* * ** *
1931557 TAACATGTA-TCATATTATTGAAC-T
1 TAACACGTACTTATACCAATGAACTT
1931581 TAACACGTACTTATACCAATGAACTT
1 TAACACGTACTTATACCAATGAACTT
1931607 TAACAC
1 TAACAC
1931613 ATAATTCCAA
Statistics
Matches: 42, Mismatches: 12, Indels: 5
0.71 0.20 0.08
Matches are distributed among these distances:
24 9 0.21
25 10 0.24
26 16 0.38
27 7 0.17
ACGTcount: A:0.39, C:0.22, G:0.07, T:0.33
Consensus pattern (26 bp):
TAACACGTACTTATACCAATGAACTT
Found at i:1931729 original size:26 final size:26
Alignment explanation
Indices: 1931700--1931752 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1931690 CTTCCATCAG
1931700 TGAAATTTAACATGCATTTAAACCAA
1 TGAAATTTAACATGCATTTAAACCAA
* *
1931726 TGAAATTTAACATGTATTTATACCAA
1 TGAAATTTAACATGCATTTAAACCAA
1931752 T
1 T
1931753 AAAAATAACA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.43, C:0.13, G:0.08, T:0.36
Consensus pattern (26 bp):
TGAAATTTAACATGCATTTAAACCAA
Found at i:1931972 original size:126 final size:126
Alignment explanation
Indices: 1931677--1931975 Score: 411
Period size: 126 Copynumber: 2.4 Consensus size: 126
1931667 TATATCAGTA
* *
1931677 AACTTATCACATACTTCCATCAGTGAAATTTAACATGCATTTAAACCAATGAAATTTAACATGTA
1 AACTTATCACATACTTACATCAGTGAAATTTAACATGCATTTACACCAATGAAATTTAACATGTA
* *
1931742 TTTATACCAATAAAAATAACACATAATTCCACCACTAAAGTTATCACAAATCATGCCAATT
66 TTTATACCAATAAAAATAACACATAATTCCACCACTAAAGTTATCACAAATCATACCAATG
* * *
1931803 AACTTATCACAAACTTACACCAGTGAAATTTAACATGCATTTACACCATTGAAATTTAA-ATTGT
1 AACTTATCACATACTTACATCAGTGAAATTTAACATGCATTTACACCAATGAAATTTAACA-TGT
* ** * ** * * *
1931867 ATTTGTAGTAATGAATGTAACATATAATTCCACCACTAAAGTTTTTACAAATCATACCAATG
65 ATTTATACCAATAAAAATAACACATAATTCCACCACTAAAGTTATCACAAATCATACCAATG
* * *
1931929 AACTTATCATATACTTACATCAATGAAATTTAACATGTATTTACACC
1 AACTTATCACATACTTACATCAGTGAAATTTAACATGCATTTACACC
1931976 GGCGAAAGTA
Statistics
Matches: 151, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
125 1 0.01
126 150 0.99
ACGTcount: A:0.42, C:0.19, G:0.07, T:0.32
Consensus pattern (126 bp):
AACTTATCACATACTTACATCAGTGAAATTTAACATGCATTTACACCAATGAAATTTAACATGTA
TTTATACCAATAAAAATAACACATAATTCCACCACTAAAGTTATCACAAATCATACCAATG
Found at i:1941435 original size:39 final size:38
Alignment explanation
Indices: 1941353--1941445 Score: 111
Period size: 38 Copynumber: 2.4 Consensus size: 38
1941343 TAAATAAATG
* *
1941353 TTTT-AAAACAATATAATATATAATTTCAAAAAATTAT
1 TTTTAAAAACTATATATTATATAATTTCAAAAAATTAT
*
1941390 TTTTAAAAACTATATATTATATGTATTTC-AAAAA-TAGT
1 TTTTAAAAACTATATATTATAT-AATTTCAAAAAATTA-T
1941428 TTATTAAAAACTATATAT
1 TT-TTAAAAACTATATAT
1941446 ATTATATATA
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
37 6 0.12
38 23 0.47
39 20 0.41
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.43
Consensus pattern (38 bp):
TTTTAAAAACTATATATTATATAATTTCAAAAAATTAT
Found at i:1941446 original size:2 final size:2
Alignment explanation
Indices: 1941439--1941481 Score: 61
Period size: 2 Copynumber: 22.0 Consensus size: 2
1941429 TATTAAAAAC
* *
1941439 TA TA TA TA T- TA TA TA TA TA TA TA TA TA TA GA TA TA TA TG TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1941480 TA
1 TA
1941482 AAATAAAAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.49
Consensus pattern (2 bp):
TA
Found at i:1942338 original size:164 final size:163
Alignment explanation
Indices: 1942115--1943053 Score: 1011
Period size: 164 Copynumber: 5.7 Consensus size: 163
1942105 CATATAGCTT
** ** * * *
1942115 TTCTCGACTTAAGCTATATTATAAATGATCTGCCTTAGAGCTGAGCATAGTCGAACTCGAAGGTC
1 TTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC
* * * * * * * * * * *
1942180 TTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAACGATGTGCCCTAGAAGTTGAGT
66 TTTGGTGGCAGATAACCCTTCTTGACTTAAGCTATGCTGCAAATGATGTG-CCTTGGAGCTGAGC
* * *
1942245 GTAATCGAACTCGAGGGTCTTTGGCAGATAACCT
130 GTAGTCGAACTCGAAGGTCTTTGGCAGATAACCC
* * *
1942279 TTCTCGGCTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCCAACTCGAAGGCC
1 TTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC
* * *
1942344 TTTGGTTGGCAGATAACCCTTCTTGACTTAAGTTATGCTGCAAATGATATGCCTTGGAGCTGAAC
66 TTTGG-TGGCAGATAACCCTTCTTGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGC
* *
1942409 GTAATCGAACTCGAAAGTCTTTGGTGACAGATAACCC
130 GTAGTCGAACTCGAAGGTCTTT-G-G-CAGATAACCC
*** * * * * * *
1942446 TTCTATCCTTGAGTTATGCTGTAAATGATATGCCTTGGAGCTGAACGTAGTCAAACTCGAAGGTC
1 TTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC
* * * * * ** *
1942511 TTTTGTTGGAAAATAACCCTTCTTGCCTTGAGCTATATTGCAAATGATGTGCCTTTGAGCTGAGC
66 -TTTGGTGGCAGATAACCCTTCTTGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGC
*
1942576 GTAGTCGAACTCGAAGGTCTTTGGCAGATAGCCC
130 GTAGTCGAACTCGAAGGTCTTTGGCAGATAACCC
* * *
1942610 TTCTCGACTTAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTAGAACTTGAAGGTC
1 TTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC
* * *
1942675 TTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCTTGGAGCTGAGC
66 TTTGG-TGGCAGATAACCCTTCTTGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGC
* *
1942740 GTAGTCAAACTCAAAGGTCTTTTGGTGACAGATAACCC
130 GTAGTCGAACTCGAAGGTC-TTT-G-G-CAGATAACCC
* * * * ** * * * * *
1942778 TTCTAGCCTTGAGTTATGCTATAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGT
1 TTCTCGACTTAAGCTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGT
*
1942843 C-TT--TGGCAGATAGCCCTTCTTGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGC
65 CTTTGGTGGCAGATAACCCTTCTTGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGC
* *
1942905 GTAGTCGAACTCGAAGGTGTTTGGTTGGAAGATAACCC
130 GTAGTCGAACTCGAA-G-GTCT--TTGGCAGATAACCC
* *
1942943 TTCTCGACTTAAGCTATACTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGAC
1 TTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC
* * * * * *
1943008 TTTTGTTGGCAAATAGCCCTTCTTGCCTTGAGCTATGTTGCAAATG
66 -TTTGGTGGCAGATAACCCTTCTTGACTTAAGCTATGCTGCAAATG
1943054 TTGTCTTAAA
Statistics
Matches: 646, Mismatches: 110, Indels: 34
0.82 0.14 0.04
Matches are distributed among these distances:
163 4 0.01
164 246 0.38
165 145 0.22
166 8 0.01
167 137 0.21
168 80 0.12
169 26 0.04
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (163 bp):
TTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC
TTTGGTGGCAGATAACCCTTCTTGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCG
TAGTCGAACTCGAAGGTCTTTGGCAGATAACCC
Found at i:1942374 original size:84 final size:84
Alignment explanation
Indices: 1942137--1943053 Score: 1011
Period size: 84 Copynumber: 11.1 Consensus size: 84
1942127 GCTATATTAT
* * * *
1942137 AAATGATCTGCCTTAGAGCTGAGCATAGTCGAACTCGAAGGTCTTTGG-TGACAGATAACCCTTC
1 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTC
* * * *
1942201 TAGCCTTGAGTTATGCTGT
66 TTGACTTAAGTTATGCTGC
* * * * * * * *
1942220 AAACGATGTGCCCTAGAAGTTGAGTGTAATCGAACTCGAGGGTC--T--TTGGCAGATAACCTTT
1 AAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTT
* * *
1942281 CTCGGCTTAAGCTATGCTGC
65 CTTGACTTAAGTTATGCTGC
* *
1942301 AAATGATGTGCCTTGGAGCTGAGCGTAGTCCAACTCGAAGGCCTTTGGTTGGCAGATAACCCTTC
1 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTC
1942366 TTGACTTAAGTTATGCTGC
66 TTGACTTAAGTTATGCTGC
* * * * *
1942385 AAATGATATGCCTTGGAGCTGAACGTAATCGAACTCGAAAGTCTTTGG-TGACAGATAACCCTTC
1 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTC
* * *
1942449 TAT-CCTTGAGTTATGCTGT
66 T-TGACTTAAGTTATGCTGC
* * * * * *
1942468 AAATGATATGCCTTGGAGCTGAACGTAGTCAAACTCGAAGGTCTTTTGTTGGAAAATAACCCTTC
1 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTC
* * * **
1942533 TTGCCTTGAGCTATATTGC
66 TTGACTTAAGTTATGCTGC
* *
1942552 AAATGATGTGCCTTTGAGCTGAGCGTAGTCGAACTCGAAGGTC--T--TTGGCAGATAGCCCTTC
1 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTC
*
1942613 TCGACTTAAGTTATGCTGC
66 TTGACTTAAGTTATGCTGC
* *
1942632 AAATGATGTGCCTTGGAGCTGAGCGTAGTAGAACTTGAAGGTCTTTGGTTGGCAGATAACCCTTC
1 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTC
*
1942697 TCGACTTAAGTTATGCTGC
66 TTGACTTAAGTTATGCTGC
* * * *
1942716 AAATGATATGCCTTGGAGCTGAGCGTAGTCAAACTCAAAGGTCTTTTGG-TGACAGATAACCCTT
1 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTTGGTTGGCAGATAACCCTT
* * * **
1942780 CTAGCCTTGAGTTATGCTAT
65 CTTGACTTAAGTTATGCTGC
* * * * * *
1942800 AAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTC--T--TTGGCAGATAGCCCTT
1 AAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTT
*
1942861 CTTGACTTAAGCTATGCTGC
65 CTTGACTTAAGTTATGCTGC
* *
1942881 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTGTTTGGTTGGAAGATAACCCTTC
1 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTC
* * *
1942946 TCGACTTAAGCTATACTGC
66 TTGACTTAAGTTATGCTGC
* * * *
1942965 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGACTTTTGTTGGCAAATAGCCCTTC
1 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTC
* * * *
1943030 TTGCCTTGAGCTATGTTGC
66 TTGACTTAAGTTATGCTGC
1943049 AAATG
1 AAATG
1943054 TTGTCTTAAA
Statistics
Matches: 698, Mismatches: 116, Indels: 39
0.82 0.14 0.05
Matches are distributed among these distances:
80 119 0.17
81 74 0.11
82 6 0.01
83 82 0.12
84 386 0.55
85 31 0.04
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (84 bp):
AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTC
TTGACTTAAGTTATGCTGC
Found at i:1948291 original size:37 final size:37
Alignment explanation
Indices: 1948250--1948343 Score: 109
Period size: 37 Copynumber: 2.5 Consensus size: 37
1948240 TAAATAAATG
*
1948250 TTTTAAAACCATATAATATA-TAATTTCAAAAAAATAT
1 TTTTAAAACTATATAATATACT-ATTTCAAAAAAATAT
* ** *
1948287 TTTTAAAACTATATATTATACGTATTTCAAAAATGTTT
1 TTTTAAAACTATATAATATAC-TATTTCAAAAAAATAT
1948325 TTTTAAAAACTATATAATA
1 TTTT-AAAACTATATAATA
1948344 AATATATAGA
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
37 18 0.38
38 16 0.33
39 14 0.29
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (37 bp):
TTTTAAAACTATATAATATACTATTTCAAAAAAATAT
Found at i:1956979 original size:15 final size:15
Alignment explanation
Indices: 1956952--1957047 Score: 59
Period size: 15 Copynumber: 6.0 Consensus size: 15
1956942 AATGAGCATA
*
1956952 TCATAGCATGAACTT
1 TCATAGCAAGAACTT
*
1956967 TCATTGCAAGAACATAT
1 TCATAGCAAGAAC-T-T
* *
1956984 GTCATAACATGAACTT
1 -TCATAGCAAGAACTT
1957000 TCAT-GACAAGAACTT
1 TCATAG-CAAGAACTT
* *
1957015 ATACCATAACATGAACTT
1 -T--CATAGCAAGAACTT
*
1957033 TCATGGCAAGAACTT
1 TCATAGCAAGAACTT
1957048 ATAGGATATA
Statistics
Matches: 61, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
15 34 0.56
16 3 0.05
17 3 0.05
18 21 0.34
ACGTcount: A:0.39, C:0.20, G:0.12, T:0.29
Consensus pattern (15 bp):
TCATAGCAAGAACTT
Found at i:1956989 original size:33 final size:33
Alignment explanation
Indices: 1956949--1957050 Score: 134
Period size: 33 Copynumber: 3.1 Consensus size: 33
1956939 CATAATGAGC
*
1956949 ATATCATAGCATGAACTTTCATTGCAAGAACAT
1 ATATCATAACATGAACTTTCATTGCAAGAACAT
* *
1956982 ATGTCATAACATGAACTTTCA-TGACAAGAACTT
1 ATATCATAACATGAACTTTCATTG-CAAGAACAT
* * *
1957015 ATACCATAACATGAACTTTCATGGCAAGAACTT
1 ATATCATAACATGAACTTTCATTGCAAGAACAT
1957048 ATA
1 ATA
1957051 GGATATATTT
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
32 2 0.03
33 58 0.95
34 1 0.02
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.29
Consensus pattern (33 bp):
ATATCATAACATGAACTTTCATTGCAAGAACAT
Found at i:1957032 original size:18 final size:15
Alignment explanation
Indices: 1956952--1957036 Score: 62
Period size: 15 Copynumber: 5.3 Consensus size: 15
1956942 AATGAGCATA
*
1956952 TCATAGCATGAACTT
1 TCATAACATGAACTT
** *
1956967 TCATTGCAAGAACATAT
1 TCATAACATGAAC-T-T
1956984 GTCATAACATGAACTT
1 -TCATAACATGAACTT
* *
1957000 TCATGACAAGAACTT
1 TCATAACATGAACTT
1957015 ATACCATAACATGAACTT
1 -T--CATAACATGAACTT
1957033 TCAT
1 TCAT
1957037 GGCAAGAACT
Statistics
Matches: 55, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
15 27 0.49
16 3 0.05
17 3 0.05
18 22 0.40
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.31
Consensus pattern (15 bp):
TCATAACATGAACTT
Found at i:1960783 original size:79 final size:79
Alignment explanation
Indices: 1960632--1960871 Score: 363
Period size: 79 Copynumber: 3.0 Consensus size: 79
1960622 ACGAATGATC
* * *
1960632 AAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCGTAGATGAAATGCATATAGG
1 AAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGATGAAATGTATATGGG
*
1960697 TGTATTATCAGCAT
66 TGCATTATCAGCAT
* * * * *
1960711 AAAAAAATAATACATATGGGTACATTATTGGCATGAAAGGATGCCTTAGCTGAAATGTATATGGG
1 AAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGATGAAATGTATATGGG
*
1960776 TGCATTATCGGCAT
66 TGCATTATCAGCAT
* *
1960790 AAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCAAAGTTGAAATGTATATGGG
1 AAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGATGAAATGTATATGGG
*
1960855 TGCATTATCAACAT
66 TGCATTATCAGCAT
1960869 AAA
1 AAA
1960872 TGTATACTAT
Statistics
Matches: 144, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
79 144 1.00
ACGTcount: A:0.38, C:0.10, G:0.24, T:0.28
Consensus pattern (79 bp):
AAAAGAATAATGCATATGGGTGCATTATTGGCATGAAAGGATGCCATAGATGAAATGTATATGGG
TGCATTATCAGCAT
Found at i:1960789 original size:45 final size:43
Alignment explanation
Indices: 1960724--1960863 Score: 127
Period size: 45 Copynumber: 3.4 Consensus size: 43
1960714 AAAATAATAC
* * *
1960724 ATATGGGTACATTATTGGCATGAAAGGATGCCTTAGCTGAAATGT
1 ATATGGGTGCATTATCGGCATGAAAGGATGCC--AGATGAAATGT
*
1960769 ATATGGGTGCATTATCGGCAT-AAA--A-G--A-AT--AATGC
1 ATATGGGTGCATTATCGGCATGAAAGGATGCCAGATGAAATGT
* *
1960803 ATATGGGTGCATTATTGGCATGAAAGGATGCCAAAGTTGAAATGT
1 ATATGGGTGCATTATCGGCATGAAAGGATGCC--AGATGAAATGT
1960848 ATATGGGTGCATTATC
1 ATATGGGTGCATTATC
1960864 AACATAAATG
Statistics
Matches: 76, Mismatches: 8, Indels: 22
0.72 0.08 0.21
Matches are distributed among these distances:
34 24 0.32
35 3 0.04
36 1 0.01
37 2 0.03
38 1 0.01
41 1 0.01
42 2 0.03
43 1 0.01
44 3 0.04
45 38 0.50
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.30
Consensus pattern (43 bp):
ATATGGGTGCATTATCGGCATGAAAGGATGCCAGATGAAATGT
Found at i:1960812 original size:34 final size:34
Alignment explanation
Indices: 1960764--1960828 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
1960754 CCTTAGCTGA
*
1960764 AATGTATATGGGTGCATTATCGGCATAAAAGAAT
1 AATGCATATGGGTGCATTATCGGCATAAAAGAAT
* *
1960798 AATGCATATGGGTGCATTATTGGCATGAAAG
1 AATGCATATGGGTGCATTATCGGCATAAAAG
1960829 GATGCCAAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.35, C:0.09, G:0.26, T:0.29
Consensus pattern (34 bp):
AATGCATATGGGTGCATTATCGGCATAAAAGAAT
Found at i:1963319 original size:835 final size:835
Alignment explanation
Indices: 1960986--1995858 Score: 43530
Period size: 835 Copynumber: 41.6 Consensus size: 835
1960976 AATATAGTTT
*
1960986 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTAGGCTATTAC
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
*
1961051 AAAACATATAGAAATTCAAACCAAATGTTATAA-CTTACTAACATACGCATACTTTGGAAAATAA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
* * *
1961115 ATTCCTAACAAATTTTCCTATGCTTATTTGATACAATTCTCATGTGACAACATAAATGTTGATCT
131 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
* *
1961180 TAATACTTCTAATTAACCACTCAAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
196 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
* * *
1961245 ACTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTATAA-TTTTCCAAAATAATCCAA
261 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
* * * * *
1961309 TTTCACATGCGAAATTCAATTTCAACGCTCAAAGAATAATATTCAGCATGGTACATAAACTACTG
326 TTTCACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTG
* * *
1961374 AACAATTACACAATAATCCATAACTTTTCCAAATTGCAAATTTAGTCCTTTAATTTTTCAAAAAT
391 AACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAAT
*
1961439 TATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTATAACATCATTTCAAGCCCCTA
456 TATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTA
* *
1961504 CATAATTTTTCTCATCCTCTATAGTTAAGGTTGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCA
521 CATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCA
* *
1961569 TGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTATTCAACGTTATAAAATCT
586 TGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCT
1961634 CTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGCT
651 CTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGCT
* *
1961699 GAAACTTCATATGTTCATATGATCAGGTACAAATGCTTTTAATCATCAATCATGCTTGGAAATGA
716 GAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAATGA
*
1961764 TTCTACAACCTCAATAACATCAAAATCCTTCATCTAATCCATAAACCCTAAGGTG
781 TTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
*
1961819 AACTTAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGTGG-TATTA
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTG-GGCTATTA
*
1961883 CAATA-ATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATA
65 CAAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATA
* * * * *
1961947 AATTCCTAACAAATATTCCTATGCTTATTTGATACAATTCTCATATGACAACATAAATGTTGATC
130 AATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATC
* * *
1962012 TTAATACTTCTAATTAACCACTCAAGTTCCTTTTTATCCGAACTTAACATAACATTTTTCACTTA
195 TTAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTA
*
1962077 AGCTCCCATCATTTCCATATTTGTGATTGAAACATCAACTTTTACAAGGTTTCCAAAATAATCCA
260 AGCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCA
* * * * *
1962142 ATTTCTCATGCGAAATTCAATTTTAACGCTCAAACATTAATTTTTAGCATGGTAGATAAACT-TT
325 ATTTCACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATT
*
1962206 GAACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTAGTCCTTTAATTTTTCAAAAA
390 GAACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAA
1962271 TTATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCT
455 TTATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCT
*
1962336 ACATAATTTTTCTCATCCTCTATAGTCAAGGTTGAATGCTTTGTGTGTCCAAGACAAGGGTTTTC
520 ACATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTC
*
1962401 ATGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTATTCAACCTTATAAAATC
585 ATGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATC
* *
1962466 TCTATATTCAAAACCTTAACTTAATTTCATCAAACCAAATATTTTTCCCAAGATTAGGGTTAGGC
650 TCTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGC
* * *
1962531 TGAAACTTTATATGTTCATATGATC-TGGTACAAATGCTTTTAATCATTAATCATGCTTGGAAAT
715 TGAAACTTCATATGTTCATATGATCAT-GTACAAATGCTTTTAATCATCAATCATGCTTGAAAAT
*
1962595 GATTCTACAACCTCAATAACATCAAAATCCTTCATCTAATCCATAAACCCTAAGGTG
779 GATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
* * *
1962652 AACTTAAACCCACTTAACTTTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGTTATTAC
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
* * * * *
1962717 AAAACATAAAGAAAATCAAACCAAACGTTAGAATCTTTCTAATATACGCATACTTTGGAAAATAA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
* *
1962782 ATTCGTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGAAAAGATAAATGTTGATCT
131 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
* *
1962847 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCTCAACTTAACATAATATTTTTCACTTAA
196 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
*
1962912 GCTCCCATCATTTCCATATTTGTGATTGAAACATCAACTTTTACAAGGTTTCCAAAATAATCCAA
261 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
* * *
1962977 TTTCTCATGCGAAATTCAATTTTAATGCTCAAACATTAATTTTTAGCATGGTACATAAACTATTG
326 TTTCACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTG
* * *
1963042 AACAATTACAAAACAATCCATAACTTTTCCAAATTGCTAATTTAGTCCTTTAATTTTTTAAAAAT
391 AACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAAT
*
1963107 TATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTATAACATCATTTCAAGCCCCTA
456 TATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTA
* *
1963172 CATAATTTTTCTCATCCTCTATAGTTAAGGTTGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCA
521 CATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCA
*
1963237 TGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCCCTCTTCAACCTTATAAAATCT
586 TGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCT
* * * *
1963302 CTATATTGAAAACCTTAACTTAATTTCATTAAAACAAATATTTTTCCCAAGATTAAGGTTAGGCT
651 CTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGCT
* *
1963367 GAAACTTCATATGTTCATATGATCATGTACAAATGTTTTTAATCATCAATCATGCTTGGAAATGA
716 GAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAATGA
* *
1963432 TTCTACAAACTCAATAACATCAAAATCCTTCATCAAATCCATAAACCTTAAGGTG
781 TTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
*
1963487 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGTTATTAC
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
* * *
1963552 AAAACATAAAGAAATTC-AACCTAATGTTAGAATCTTACTAATATACGCATACTTTGGAAAATAA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
*
1963616 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTTATCT
131 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
*
1963681 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAATATTTTTCACTTAA
196 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
* * * *
1963746 GCTCCCATCATTTCCATATTTGTGAATGAAACCTCAACTTTTAGAAGGTTTTCATAATAATCCAA
261 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
*
1963811 TTTCACATGCGAACTTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTG
326 TTTCACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTG
**
1963876 AACAATTACACAACAATCCATAACTTTTCCATTTTGCTAATTTGGTCCTTTAATTTTTCAAAAAT
391 AACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAAT
*
1963941 TATAGAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTA
456 TATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTA
* * *
1964006 CATAATTTTTCTCATCCTCTATTGTCAAGGTCGAATGCTTTGTGTGTTCAAGATAAGGGTTTTCA
521 CATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCA
*
1964071 TGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCCCTCTTCAACCTTATAAAATCT
586 TGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCT
* * *
1964136 CTATATTGAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAAGGTTAGGCT
651 CTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGCT
* *
1964201 GAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCAAGCTTGGAAATGA
716 GAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAATGA
* * *
1964266 TTCTACAAACTCAATAACATCAAAATCCTTCATCAAATCTAT-AACCTTAAGGTG
781 TTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
* * *
1964320 AACATAAACACACTTAACTTTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGTTATTAC
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
* *
1964385 AAAACATAAAGAAATTCAAACCAAATGTTAGAATCTTACTAATATACGCATACTTTGGAAAATAA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
* *
1964450 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGAAAAATGTTTATCT
131 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
*
1964515 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAATATTTTTCACTTAA
196 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
* * *
1964580 GCTCCCAGCATTTCCATATTTGTGAATGAAACCTCAACTTTTACAAGGTTTTCAAAATAATCCAA
261 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
1964645 TTTCACATGC-AAACTTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATT
326 TTTCACATGCGAAA-TTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATT
** *
1964709 GAACAATTACACAACAATCCATAACTTTTCCATTTTACTAATTTGGTCCTTTAATTTTTCAAAAA
390 GAACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAA
* * *
1964774 TTATAGAATAGTCCCTAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCAT
455 TTATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCT
* * *
1964839 ACATAATTTTTCTCATCCTCTATTGTCAAGGTCGAATGCTTTGTGTGTTCAAGATAAGGGTTTTC
520 ACATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTC
*
1964904 ATGATTTTACTCGATTTTGATTTGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATC
585 ATGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATC
* * *
1964969 TCTATAATCAAAA-CTCTAACTTAATTTCATCAAAA-AACATATTTCTCGCTAGATTAGGGTTAG
650 TCTATAATCAAAACCT-TAACTTAATTTCATCAAAACAA-ATATTTTTCCCAAGATTAGGGTTAG
*
1965032 GCTGAAACTTCATATGTTCATATTATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAA
713 GCTGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAA
*
1965097 TGATTCTACAACCTCGATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
778 TGATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
*
1965155 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACC-AAATTTTAGGCTATTAC
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
*
1965219 AAAACATATAGAAATTCAAACCAAATGTTATAA-CTTACTAACATACGCATACTTTGGAAAATAA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
* *
1965283 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGAAAAATGTTTATCT
131 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
*
1965348 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAATATTTTTCACTTAA
196 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
* * *
1965413 GCTCCCAGCATTTCCATATTTGTGAATGAAACCTCAACTTTTACAAGGTTTTCAAAATAATCCAA
261 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
1965478 TTTCACATGC-AAACTTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATT
326 TTTCACATGCGAAA-TTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATT
** *
1965542 GAACAATTACACAACAATCCATAACTTTTCCATTTTACTAATTTGGTCCTTTAATTTTTCAAAAA
390 GAACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAA
* * *
1965607 TTATAGAATAGTCCCTAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCAT
455 TTATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCT
* * *
1965672 ACATAATTTTTCTCATCCTCTATTGTCAAGGTCGAATGCTTTGTGTGTTCAAGATAAGGGTTTTC
520 ACATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTC
1965737 ATGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATC
585 ATGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATC
* * * * *
1965802 TCTATAATCAAAA-CTCTAACTTAATTTCATTAAAACACATATTTCTCGCTAGATTAGGGTTAGG
650 TCTATAATCAAAACCT-TAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGG
1965866 CTGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAAT
714 CTGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAAT
*
1965931 GATTCTACAACCTCGATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
779 GATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
*
1965988 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACC-AAATTTTAGGCTATTAC
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
*
1966052 AAAACATATAGAAATTCAAACCAAATGTTATAA-CTTACTAACATACGCATACTTTGGAAAATAA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
* * * * *
1966116 ATTCCTAACAAATATTCCTATGCTTATTTGATACAATTCTCATGTGACAACATAATTGTTGATCT
131 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
*
1966181 TAATACTTCTAATTGACCACTCAAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
196 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
* * *
1966246 GCTCCCATCCTTTCCATATTTGTGATTGAATCCTCAACTTTTACAAGGTTTCCAAAATAATACAA
261 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
* * ** * *
1966311 TTTCAAATGCGAACTTCAATTTCAACACTCAAACATTAATTTTCAGCATGGTACGTAGACTATTG
326 TTTCACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTG
* * * * *
1966376 AAGAATTACACAATAATCTAAAACTTTTTCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAAT
391 AACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAAT
* * *
1966441 TATAGAATAGTCCCCAAATTTTTCTTAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTG
456 TATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTA
* * *
1966506 CATAGTTTTTCTCATCCTCCATAGTCAAGGTCGAATCCTTTGTGTGTCCAAGACAAGGGTTTTCA
521 CATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCA
* * *
1966571 TGATTTTATTCGATTTTGATTC-ATTTTAAGCATGAAATCAACCTCTATTCAACCTTATAAAATC
586 TGATTTTACTCGATTTTGATTCGA-TTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATC
* * *
1966635 TATATAATCAAAACCTTATCTTAATTTCATCAAAACACATATTTTTCCCAAGATTAGGGTTAGGC
650 TCTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGC
* * * *
1966700 TGAAACTTTATATGTTCATATAATCATGTACAAATGCTTTTATTAATCAATCATGCTTGAAAATG
715 TGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAATG
*
1966765 ATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCTTAAGGTG
780 ATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
* * *
1966821 AACTTAAACCCACTTAACTTTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGTTATTAC
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
* * * *
1966886 AAAACATAAAGAAATTCAAACCAAATGTTAGAATCTTAATAATATACGCATACTTTGGAAAATTA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
*
1966951 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATGT
131 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
*
1967016 AAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
196 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
* * *
1967081 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTTCAAAGTAATACAA
261 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
* *
1967146 TTTCACATGCGAACTTCAATTTCAATGCTCAAACATTAACTTTCAGCATGGTACATAAACTATTG
326 TTTCACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTG
* **
1967211 AACAATTACACAACAATCTATAACTTTTCCATTTTGCTAATTTGGTCCTTTAATTTTTCAAAAAT
391 AACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAAT
*
1967276 TA-AAGAATAGTCCCAAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCT
456 TATAA-AATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCT
* * * *
1967340 ACATAATTTTTCTCATCCTCTGTTGTCAAGGTCGAATGCTTTGTGTGTTCAAGATAAGGGTTTTC
520 ACATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTC
* *
1967405 ATGATTTTACTCGATTTTTATTCGATTTAAGCATGAAATCGACCTCTCTTCAGCCTTATAAAATC
585 ATGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATC
* * *
1967470 TCTATAATCAAAA-CTCTAACTTAATTTCATCAAAACACATATTTCTCCCTAGATTAGGGTTAGG
650 TCTATAATCAAAACCT-TAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGG
*
1967534 CTGAAATTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAAT
714 CTGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAAT
* *
1967599 AATTCTACAACCTCGATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
779 GATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
*
1967656 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTAGGCTATTAC
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
* *
1967721 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATAAGCATACATTGGAAAATAA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
* * * *
1967786 ATTCCTAACAAAATTTCCTATGCTTATTTGATACAATTGTCATGTGACAACATAAATGTTGATCT
131 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
* * *
1967851 TAATACTTCTAATTAACCACTCAAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCATTTAA
196 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
* * * *
1967916 GCTCTCATTATTTTCATATTTGTAATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
261 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
* * * *
1967981 TTTCACATGCGAAATTCAAAGATTATAAAATAGTCCCAAA-A-T--TTTTCA--AAGGCT-TATA
326 TTTCACATGCGAAATTC--A-ATT-T-CAAT-G-CTCAAACATTAATTTTCAGCATGG-TACATA
* * * ** * * * *** * * **
1968039 GAA-TACTTATAACATCATTTCA-AGCCCCTACGTAATTTTTCTCATCCTCCATAGTCAAGGTCG
383 -AACTA-TT-GAACA--ATTACACA-ACAATCCATAACTTTTC-CAAATTGC-TAAT-TTGGTC-
* * * * * * ** * * * ** ** *
1968102 AATGCTTT-GTGTGTCCAAGACAAGGGTTTTCATATTTTACTC-GATTTTGAT-TCGATT-TAAG
438 ----CTTTAAT-TTTTCAA-A-AA---TTATAAAATAGTCCCCAAATTTTTCTAAGGCTTGT-AG
* ** * * * * * ** * * * *
1968163 CATGAAAT-CGACCTC-TCTTCAA--CCTTATAAAATCTCTATAATCAAAACCT-TA-ACTTAAT
492 AAT-ACTTACAACATCAT-TTCAAGCCCCTACATAAT-T-T-T--TCTCATCCTCTATAGTCAAG
* * ** ** * * * ** ** ** *
1968222 TTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGC-TGAAACTTCATATGTTC-ATATGA
550 GTC--GAATGC-TTTGTGTGT-CCAAGACAAGGGTT-TTCATG--A-TT--T-TACTCGAT-T-T
* * * * ** * * *
1968285 TCATGTACAAATGCTTTTAATCATCAATCATGCTTGGAAATGATTCTACAAACTCAATAACATCA
602 TGAT-T-C----G-ATTTAAGCATGAA--AT-C---GACCT--CTCTTC-AAC-C--T--TAT-A
* * *
1968350 AAATC-CTTCATCAAATCCATAAACCTTAAGGTGAACTTAAACCCACTTAACTTTCAAAATTTAC
645 AAATCTC-T-AT--AAT-CA-AAACC-T----T-AACTT--A---A-TT-TC-ATCAAAA--CA-
* * * * * * ** * * * ** *
1968414 ATTTTGGTTATTGACCAAAATTTTGGGGTATTAC-AAAACAT-ATA-GAAATTCAAACCA-AATG
687 AATAT--TT-TT-CCCAAGA-TTAGGGTTA-GGCTGAAACTTCATATG---TTCATATGATCATG
* ** ** * * * **
1968475 TTAGAATAT--TACTAA-CAT-ACGCATACTTTGGAAAATAAATTCCTAACAA-AT--ATTCCTA
743 -TACAA-ATGCTTTTAATCATCAATCATGC-TT-GAAAAT-GATT-CT-ACAACCTCAATAAC-A
** * * * *
1968533 TGC-TTAT--TTGATACAATTCTCATGTGACAA-CATAATTGTTG
800 T-CAAAATCCTTCAT-CAAATC-CA--T-A-AACCCTAA--GGTG
* * * * * * * * ** * *
1968574 ATCTTAATACTTCTAATTGACCACTC--AAGTT-CCTTTTTATCCCAACTT-AACATAACATTTT
1 AACATAA-AC--CCACTT-AACATTCAAAATTTACATTTTGGT---TA-TTGACCA-AA-ATTTT
*** * **** * ** * * * * ** * * *
1968635 TCACTTAAGCTCCCATCCTTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAA
56 GGGC-T-A--T----TACAAAACATA-TAGAAATTCAAA-C-CAAATGTTAGAATCTTACTAACA
* * * * ** * ***
1968700 TA---ATACAATTT--CAAATGCGAA---CT-TC-AA-TTT-CAACACTCA-AACAT-TAATTTT
110 TACGCATAC--TTTGGAAAAT--AAATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTT
** * * * * * * * * *** * *
1968751 CA-GCATG-GTACATAGACTGTTAAACAATTACAAAACAATCCAA--AACTTTTCCAAATTACTA
171 CATG--TGACAAGATA-AATGTTGATC--TT--AATAC-TTCTAATTGACCACTCC-AGTTCCT-
** * * ** * * ** * * * *
1968812 ATTTGGTCCTTTAATTTTTCA-AAAATTATAGA-AT-AG-TCCCCA-AATTTTTC-TAAGGCTTG
226 -TTTTATCC--CAACTTAACATAACATTTTTCACTTAAGCT-CCCATCA-TTTCCAT-A--TTTG
* *** * * ** * *
1968871 T-A--GAATACTTACAACATCATTT-CAAGCCCCTACATAATTTTTCTC-ATCCTC-TATAGTC-
283 TGATTGAA-ACCT-CAAC-T--TTTACAAG-GTTTCCA-AAATAATC-CAAT-TTCACAT-G-CG
* * *** * **** ** ** * *
1968929 AAGGTTGAATGCTTTGTGTGTTCAACACAAGGGTTTTCATG-ATTTTAC-TCGA-TTTTGATTCG
337 AA-ATTCAA---TTTCAATGCTCAA-ACATTAATTTTCA-GCATGGTACATAAACTATTGA-AC-
* * * * * * * ***** *
1968991 ATTTAACCATGAAATCGACCTCTCTTCAACCTTAT-AAAATCT-CTATAATCAAAACTCTAACTT
394 AATT-A-CA--CAA-C-A-ATC-CAT-AA-CTTTTCCAAAT-TGCTA-ATTTGGTCCTTTAA-TT
* * * * ** * * **** * *
1969054 AATTTCATCAAAA-CACATATTTCTCCCTAGATTAGGGTTAGGC---T-GAA-ACTT-CATATAT
446 --TTTCA--AAAATTATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACA-ACA-
* * * *** * * * * * ** *
1969112 TCATAT-GATCATGTACA-AATGTTTT-TAATCATC-A-A-TCATGCTTGAA---AATGAT-TCT
505 TCATTTCAAGCCCCTACATAAT-TTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTG-TGTGT
* ** * ** * * ** * ** * * *
1969167 ACAACCTCAA---TTACATCAAAATCCTT-CATCAAATCCATAAAAC-A-CTAAG-GTGAACATA
568 CCAA-GACAAGGGTT--TTCATGAT-TTTAC-TC-GAT-TTTGATTCGATTTAAGCATGAA-ATC
* * * * * * * * ** ***
1969225 AACC-CACTT-AACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTAGGGT-A-TT-A-C
625 GACCTCTCTTCAACCTT-ATAA---A-A-TCT--CTA-TAATCAAAACCTTAACTTAATTTCATC
* * *** *** * * * *
1969284 CAAACATATAGAAATTCAAACCAA-ATGTTATAACTTA--CTAACATAC-GCATACT-TTGGAAA
681 AAAACAAATA-TTTTTC---CCAAGA--TTA-GGGTTAGGCTGA-A-ACTTCATA-TGTT--CAT
* * * * * * *** *
1969344 ATAAATTCCT-AACAAATTTTCCTATGCTTATTTGATACAATTCTCATGTGACAACATAAATGTT
734 AT-GA-TCATGTACAAA---TGCT-T--TTA-ATCAT-CAA---TCA--TG-CTTGA-AAATGAT
* ** ** * * **
1969408 GATCTTA-ATACTTCGAATTAACCACTCAAGTTCCTT--T-TTATCC--CAA-CTTAACAT-
782 --TC-TACA-ACCTC-AA-TAA-CA-TCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
**** * ** * ** * * ****
1969462 AACAT-TTTTCACTTAAGC-TCCCATCATTTCCATATTTGTGATTA-AAACCTCAACTTTTATAA
1 AACATAAACCCACTTAA-CAT-TCAAAATTTACAT-TTTG-G-TTATTGACC-AAAATTTTGGGC
* * * ** * * ** * *
1969524 TTTTCCAAAATAATCCAATTTCACATGCGAAATTCAATTTC-AACGCTCAAAGAATAATATTCAG
60 TATT--ACAA-AA--C-A--T---AT-AGAAATTCAA-ACCAAATG-T--TAGAATCTTACT-AA
* * * *** * *
1969588 CAT-GGTACATAAACTACT-GAACAATTACACAAC-AATCCATAACTTTTCCAAATTGCTAAGTT
108 CATACG--CAT--ACT-TTGGAA-AA-TAAATTCCTAA--CA-AA-TTTTCC-TA-TGCTTA-TT
** * * * ** **
1969650 AGTCCTTTAATTTTTCA----AAAATTATAAAATAG-T-CCCGAAATTA-TTCTAAGGCTTGTAG
159 --TGATATAA-TTTTCATGTGACAA-GAT-AAAT-GTTGATCTTAA-TACTTCTAA----T-T-G
** * ** * * *
1969708 AATACTTACAACATCATTTTAATCCC--C-T-ACATAA-TTTTTCTCATCCTCTATAG-T--CA-
211 ACCAC-T-CCAGTTCCTTTTTATCCCAACTTAACATAACATTTT-TCA--CT-TA-AGCTCCCAT
* * ** * ** ** ** * * * *** * * *
1969764 AAGTTGAATGCTTTGTG-TGTCCAA-GACAAGGGTTTCCATGATTTTACTCGATTTTGATTCGAT
269 CATTTCCAT-ATTTGTGAT-TGAAACCTCAA-CTTTTACAAG-GTTT-C-C-AAAATAATCCAAT
** * ** * * * * * * ** *
1969827 TT-A-AGTATGAAA-TCGACATCTAT--TCAACCTTATAAAATCTC--TATAAT-CA-AAAC-CT
327 TTCACA-TGCGAAATTCAATTTCAATGCTCAAAC--ATTAATTTTCAGCATGGTACATAAACTAT
* * * ** * * *
1969882 T-ATCTTAATTTCATCAA-AA--CA-AATATTATTCCCAATATTAG--GGTTAGG--C-TGAA-A
389 TGAAC--AATTACA-CAACAATCCATAA-CTT-TT-CCAA-ATT-GCTAATTTGGTCCTTTAATT
* * ** ** * * * * * ** * ** *
1969936 CTTCATATGTTCATATGATCAGGT--ACAAATGCTTT-TAA-TCATGAATCATGCTTGGAA-ATG
446 TTTCAAAAATT-ATAAAAT-A-GTCCCCAAAT-TTTTCTAAGGCTTGTAGAATACTTACAACATC
* * * * * ** *
1969996 ATTCTACAA-CCTCAATAACATCAAAATCCTTCATCTAATCC-ATAAACCCTAATGT-GAA--CT
507 ATT-T-CAAGCC-C-CT-ACAT---AAT--TT-TTCTCATCCTCTATAGTC-AAGGTCGAATGCT
******* * ** ** * * * *
1970056 TAAACCCACTTAACTTTCAA-AATTTACATTTTGGTTATTGAC-CAAAATTTTGGGTT--ATTAC
560 TTGTGTGTC-CAA--GACAAGGGTTTTCA---TGATT-TT-ACTC--GATTTT-GATTCGATT--
* * * ** * * * * *
1970117 AAAACATAAAGAAATTCAAACCAAATGTTAGAATCTTACTAATATACGCATACTTTGGAAAAT-A
612 TAAGCAT---GAAA-TC-GACC-TCTCTT-CAACCTTA-T-A-A-A---AT-CTCT--ATAATCA
* * ** **** ** * * * * * * * *
1970181 AATTCC-TAAC-AAATTTTCCTATGCTTATTTGATATAATTCTCATG-TGACAAGATAAATGTTG
660 AA-ACCTTAACTTAA-TTT-C-AT-CAAAACAAATATTTTTCCCAAGAT--TAGGGT-TAGGCTG
* * * * * * ** * * * * * * *
1970243 -ATCTTAATA-CTTC-TAATTGACCA-CTCCAGTTCCTTTTTATCCT-AA-CTTAACAT-AATAT
717 AAACTTCATATGTTCAT-A-TGATCATGTACAAATGCTTTTAATCATCAATCAT-GCTTGAAAAT
** * * * ** * * * * * ****
1970301 TTTTC-ACTTAAGCTCCCATCATTTCCATAT-TTGTGATTGAAA-CC-TCAAGTTTTACAAGGTT
779 GATTCTAC--AACCT-CAATAACATCAAAATCCT-TCA-TCAAATCCAT-AAACCCT--AAGG--
*
1970362 TTC
834 -TG
* * * * * * * * *** ** ** * * **
1970365 AAAAT-AATCCAATTCCACATGCGAACTTCA-ATTTCAATGCTCAAACATTAATTTTCAGC-ATG
1 AACATAAACCCACTT-AACATTCAAAATTTACATTTTGGTTATTGACCA-AAATTTTGGGCTAT-
* *** * * ** * *
1970427 GTACATAAAC-TATTGAACAATTAAACAACAATCCATAACT-TTTCCATTTTGCTAATTTGGCCC
63 -TACA-AAACATATAG-A-AATT---C-A-AA-CCA-AA-TGTTAGAATCTTACTAACAT-ACGC
* * ** * * *
1970490 TTTAATTTTTCAAAAATTAAAGAATAGTCC-CA-AAATTTTTCTATGGCTTA-TAGAATACTTAC
115 -AT-A-CTTTGGAAAA-T--A-AAT--TCCTAACAAATTTTCCTAT-GCTTATTTG-ATA--T--
* *** * * * * * * * * * * *
1970552 AACATCATTTCAAGCCCCTACAT-AAT-TT-TTC-TCAT-CCTCT-ATTGTCAAGGTCGA-ATGC
165 -A-AT--TTTCATGTGACAAGATAAATGTTGATCTTAATACTTCTAATTGACCA-CTCCAGTTCC
* * * *** * * * * * *
1970610 TTTGTGTGT-TCAA---GACA-AGGGTTTTCATGATTTTA-CT-CGAT--TTT-GATTCGATTTA
225 TTT-T-TATCCCAACTTAACATAACATTTT--TCACTTAAGCTCCCATCATTTCCA-T--ATTTG
* * ** ** * * * ** * *
1970665 AGCA-TGAAA--TCGACCTCTCTT-CAA-CCTT--ATTA-AATCTCTATAATCAAAACCTTAACT
283 TG-ATTGAAACCTC-AACT-T-TTACAAGGTTTCCAAAATAATC-CAAT-TTCACATGC-GAAAT
* * * *
1970722 T-AATTTC-AT-C-AAAACAAATATTTTTCCCAAG-ATTAAGGTTAGGC-TGAAACTTCATATGT
341 TCAATTTCAATGCTCAAAC-ATTAATTTT--C-AGCA-T--GG-TA--CAT-AAAC-T-AT-TGA
* * ** * * * * * **
1970781 TCATATGATCATGTACAA---AT-GCTTTTAATCATCAATCATGCTTGGAA-ATGATTCTACAA-
392 ACA-ATTA-CA-CAACAATCCATAACTTTT--CCA--AAT--TGC-T--AATTTGGTCCTTTAAT
** * * ** ** * **
1970840 -ACTCAATAA-CATCAAAATCCTTCATCAAA---TCCATAAACCTTAAGGT-G-A-ACTTA-AAC
445 TTTTCAAAAATTAT-AAAAT-AGTCCCCAAATTTTTC-TAAGGCTT---GTAGAATACTTACAA-
* **** *** * * *** * *
1970896 CCACTTAACTTTCAA-ATTTTACAT--TTTGATTACTGACAAAAAT-TTTGGGGTA-TTAC-AAA
503 -CA--TCA-TTTCAAGCCCCTACATAATTT--TT-CT--C-ATCCTCTATAGTCAAGGT-CGAAT
* * ** ** *** * * *
1970955 ACATATAGAAAT-T-CAA-ACCAAATGTTAGAAT-ATTACTAACATACGCATACTTTGGAAAATA
557 GC-T-TTG-TGTGTCCAAGA-CAAGGGTTTTCATGATT--TTAC-T-CG-AT--TTT-G--ATTC
* * * * * * * * * *
1971016 AATTCCTAA-CA--AATAT--TCCTATGCTT--A-TTTGATACAAT-TCTCAT-GTGACAACATA
608 GATT--TAAGCATGAA-ATCGACCTCT-CTTCAACCTT-ATAAAATCTCT-ATAATCAAAACCTT
* * * * *** ** ** ** *
1971071 AATGTTGATCTTCAT-AACAA-GATTAGGGTTAGGCTGAA-ACTTCATATGTTCA-TATGATCAG
667 AA-CTTAAT-TTCATCAA-AACAAATA---TTTTTCCCAAGA-TT-A-GGGTT-AGGCTGA--AA
* * * * * ** * * * * *
1971132 GTACAAATGCTT--T-TAATCA--T-CAATCACGCTTGGAAATGATTCTA-CA-ACCT---CA--
720 CTTCATATG-TTCATATGATCATGTACAA--ATGCTT-TTAATCA-TCAATCATGCTTGAAAATG
* * * *
1971184 AT--------------AACATCAAAATCCTTCATCAAATCTATAGACCTTAAGGTT
780 ATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
* * ** *
1971226 AACATAAACACACCTAATTTTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGGTATTAC
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
* *
1971291 AATA-ATATAGAAATTCAAACCAAATGTTAGAATCTTACTAATATACGCATACTTTGGAAAATAA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
*
1971355 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTCTCATGTGACAAGATAAATGTTGATCT
131 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
* *
1971420 TAATACTTCTAATTGACCACTCAAGTTCCTTTTTATCCCAACTTAACATAATATTTTTCACTTAA
196 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
* *
1971485 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAAGTTTTACAAGGTTTTCAAAATAATCCAA
261 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
*
1971550 -TTCAACATGCGAACTTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATT
326 TTTC-ACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATT
** *
1971614 GAACAATTACACAACAATCCATAACTTTTCCATTTTGATAATTTGGTCCTTTAATTTTTCAAAAA
390 GAACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAA
* * *
1971679 TTATAGAATAGTCCCAAAATTTTTCTAAGGCTTGTAAAATACTTACAACATCATTTCAAGCCCCT
455 TTATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCT
* *
1971744 ACATAATTTTTCTCATCCTCTATTGTCAAGGTCGAATGCTTTGTGTGTTCAAGACAAGGGTTTTC
520 ACATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTC
*
1971809 ATGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATTAAATC
585 ATGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATC
* *
1971874 TCTATAATCAAAATCTTAAC-TAATTTCATCAAAACAAATATTTTTCCCAAGATTAAGGTTAGGC
650 TCTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGC
*
1971938 TGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGGAAATG
715 TGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAATG
* * *
1972003 ATTTTACAAACTCAATAACATCAAAATCCTTCATCAAATCCATAAACCTTAAGGTG
780 ATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
* * * *
1972059 AACTTAAACCCACTTAACATTCAAAATTTAAATTTTGATTATTGACCAAAATTTTGGGGTATTAC
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
*
1972124 AAAACATATAGAAATTCAAA-CAATATGTTAGAATATTACTAACATACGCATACTTTGGAAAATA
66 AAAACATATAGAAATTCAAACCAA-ATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATA
* * *
1972188 AATTCCTAACAAATTTTCCTATGCTTATTTGATACAATTCTCATGTGACAACATAAATGTTGATC
130 AATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATC
* *
1972253 TTAATACTTCTAATTAACCACTCAAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTA
195 TTAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTA
*
1972318 AGCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCCAAATAATCCA
260 AGCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCA
* * * * * * *
1972383 ATTTCTCAT-CTGAAATTCAATTTCAACGTTCAAAGAATAATATTCAGCATGGTACATAAACTAC
325 ATTTCACATGC-GAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTAT
* *
1972447 TGAACAATTACACAATAATCCATAACTTTTCCAAATTGCTAATTTAGTCCTTTAATTTTTCAAAA
389 TGAACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAA
* * *
1972512 ATTATAAAATAGTCCCCAAATTATTCTAAGGCTTGTAGAATACTTACAACATCATTTTAATCCCC
454 ATTATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCC
* *
1972577 TACATAATTTTTCTCATCCTCTATAGTCAAGGTTGAATGCTTTGTGTGTCCAAGACAAGGGTTTC
519 TACATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTT
* * *
1972642 CATGATTTTACTCGATTTTGATTCGATTTAAGTATGAAATCGACATCTATTCAACCTTATAAAAT
584 CATGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAAT
* **
1972707 CTCTATAATCAAAACCTTAATTTAATTTCATCAAAACAAATATTTTTCCCAAGATTATAGTTAGG
649 CTCTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGG
* *
1972772 CTGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCACGCTTGGAAAT
714 CTGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAAT
* * * *
1972837 GATTCTACAACGTCAATAACATCAAAATCCTTCATCAAATCTATAGACCTTAAGGTG
779 GATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
* * ** * *
1972894 AACATAAACACACCTAATTTTCAAAATTTACATTTTGGTTATTGACTAAAATTTTGGGGTATTAC
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
*
1972959 AATA-ATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
* * * *
1973023 ATTCCTAACAAATTTTCTTATGCTTATTTGATAAAATTCTCATGTGACAACATAAATGTTGATCT
131 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
* *
1973088 TAATACTTCTAATTAACCACTCAAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
196 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
*
1973153 GCTCCCATCATTTCCATATTTGTGATTGAAACATCAACTTTTACAAGGTTTCCAAAATAATCCAA
261 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
* * * * *
1973218 TTTCTCATGCGAAATTCAATTTTAACGCTCAAACATTAATTTTTAGCATGGTACATAAAGTATTG
326 TTTCACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTG
* * *
1973283 AACAATTACACAACAATCTATAACTTTTCCAAATTGTTAATTTAGTCCTTTAATTTTTCAAAAAT
391 AACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAAT
1973348 TATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATA-TATACAACATCATTTCAAGCCCCT
456 TATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACT-TACAACATCATTTCAAGCCCCT
* *
1973412 ACATAATTTTTATCATCCTCTATAGTCAAGGTTGAATGCTTTGTGTGTCCAAGACAAGGGTTTTC
520 ACATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTC
* *
1973477 ATGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTATTCAACGTTATAAAATC
585 ATGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATC
**
1973542 TCTATAATCAAAATATTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGC
650 TCTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGC
* * *
1973607 TGAAACTTCATATGTTCATATGATCAGGTACAAATGCTTTTAATCATCAATCACGCTTGGAAATG
715 TGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAATG
* *
1973672 ATTCTACAGCCTCAATAACATCAAAATCCTTCATCTAATCCATAAACCCTAAGGTG
780 ATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
* * * *
1973728 AACTTAAACCCACTTAACTTTCAAAATTTAAATTTTGGTTATTGACCAAAATTTTGGGGTATTAC
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
* * * *
1973793 AATA-ATATAGAAATTCAAACCAAATGTTAAAATTTTACTAACATACGCATACTTTGGAAAGTAA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
* * * *
1973857 ATTCCTAACAAATTTTCCAATGCTTATTTGATACAATTCTCATGTGACAACATAAATGTTGATCT
131 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
* * ** *
1973922 TAATACTTCTAATTAACCACTCAAGTTCCTTTTTATATCAACTTAACATAACATTTTTAACTTAA
196 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
*
1973987 GCTCCCATCATTTCCATATTTGTGATTGAAACATCAACTTTTACAAGGTTTCCAAAATAATCCAA
261 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
* * * * *
1974052 TTTCTCATGCGAAATTCAATTTTAACGCTCAAACATTAATTTTTAGCATGATACATAAACT-TTG
326 TTTCACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTG
*
1974116 AACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTAGTCCTTTAATTTTTCAAAAAT
391 AACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAAT
*
1974181 TATAAAATAGTCCCCAATTTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTA
456 TATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTA
* *
1974246 CATAATTTTTCTCATCCTCTATAGTCAAGGTTGAATGCTTTGTGTGTCCAAGATAAGGGTTTTCA
521 CATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCA
* *
1974311 TGATTTTACTCGATTTTGATTCGATTTAAGCATAAAATCGACCTCTATTCAACCTTATAAAATCT
586 TGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCT
*
1974376 CTATATTCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGCT
651 CTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGCT
* * * *
1974441 GAAACTTTACATGTTCATATGATCAGGTACAAATGCTTTTAATCATCAATCATGCTTGGAAATGA
716 GAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAATGA
*
1974506 TTCTACAACCTCAATAACATCAAAATCCTTCATCTAATCCATAAACCCTAAGGTG
781 TTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
* * *
1974561 AACTTAAACCCACTTAACTTTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGTTATTAC
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
* * * *
1974626 AAAACATAAAGAAAATCAAACCAAATGTTAGAATCATT-CTAATATACGCATAATTTGGAAAATA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATC-TTACTAACATACGCATACTTTGGAAAATA
1974690 AATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATC
130 AATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATC
* *
1974755 TTAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCTCAACTTAACATAATATTTTTCACTTA
195 TTAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTA
*
1974820 AGCTCCCATCATTTCCATATTTGTGATTGAAACATCAACTTTTACAAGGTTTCCAAAATAATCCA
260 AGCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCA
* * * * *
1974885 ATTTCTCATGTGAAATTCAATTTTAACGCTCAAACATTAATTTTTAGCATGGTACATAAACTATT
325 ATTTCACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATT
* *
1974950 GAACAATTACAAAACAATCCATAACTTTTCCAAATTGCTAATTTAGTCCTTTAATTTTTCAAAAA
390 GAACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAA
* *
1975015 TTATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTACAAGACCCT
455 TTATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCT
* * *
1975080 ACATAATTTTTCTCATCCTCTATAGTTAAGGTTGAATGCTTTGTGAGTCCAAGACAAGGGTTTTC
520 ACATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTC
*
1975145 ATGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCCCTCTTCAACCTTATAAAATC
585 ATGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATC
* * * *
1975210 TCTATAATCAAAA-CTCTAACTTAATTTCATCAAAACACATATTTCTCGCTAGATTAGGGTTAGG
650 TCTATAATCAAAACCT-TAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGG
1975274 CTGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAAT
714 CTGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAAT
*
1975339 GATTCTACAACCTCGATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
779 GATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
*
1975396 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACC-AAATTTTAGGCTATTAC
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
*
1975460 AAAACATATAGAAATTCAAACCAAATGTTATAA-CTTACTAACATACGCATACTTTGGAAAATAA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
* * *
1975524 ATTCCTAACAAATTTTCCTATGCTTATTTGATACAATTCTCATGTGACAACATAAATGTTGATCT
131 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
* * * * * *
1975589 TAAAACTTCTAATTAACTACTCAAGTTCCTTTTTATCTCAACTTAAGATAACATTTTTCACTTAA
196 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
* * * *
1975654 GCTCCCATCATTTCCATATTTGAGATTGAAACCTCAACTTTTTCAAGGCTTCGAAAATAATCCAA
261 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
* * * *
1975719 TTTCACATGCGAAATTCAATTTCAACGTTCAAACATTAATTTTTAGCATGGTACATAAACTATTA
326 TTTCACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTG
* * *
1975784 AACAATTACACAAAAATCCATAACTTTTAC-AATTGCTAATTTGGTCCTTTAATTTATCAAAAAT
391 AACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAAT
* ** * *
1975848 TCTAAAATAGTCCCCAAATTTTTCTAAGTATTGTAGAATACTTACAACATCATTTCAAGACCCTG
456 TATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTA
* *
1975913 CATAATTTTTCTCATCCTATATAGTCAAGGTCGAATGCTTTTTGTGTCCAAGACAAGGGTTTTCA
521 CATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCA
* *
1975978 TGATTTTACTCGATTTTGATTCAATTTAAGCATGAAATCGACCTCTATTCAACCTTATAAAATCT
586 TGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCT
* * * * *
1976043 CTATAATCAAAACCCTAACTTAATTTCATCAAAACACATATTTCTCCCAAGATTAGGGTGAGGAT
651 CTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGCT
* *
1976108 AAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATAATCAATCATGCTTGAAAATGA
716 GAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAATGA
*
1976173 TTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCTTAAGGTG
781 TTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
* * * * * * * *
1976228 AGCTTAAACCCACTTAACTTTTAAAATATACATTTTGGTTAATGACCAAAATTTTGGGGTATTAT
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
* *
1976293 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAATATAAGCATACTTTGGAAAATAA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
* * * *
1976358 ATTCCTAACAAAATTTCCTATGCTTATTTGATACAATTGTCATGTGACAACATAAATGTTGATCT
131 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
* *
1976423 TAATACTTCTAATTAACCACTCAAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
196 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
* ** *
1976488 GCTCCCATTATTTTTATATTTGTGATTGAAACCTCAACTTTTAGAAGGTTTCCAAAATAATCCAA
261 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
* * *
1976553 TTTCACATGCGAAATTCAATTTCAACGCTCAAACATTAATTTTCAGCATGGTACATAAACTAGTA
326 TTTCACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTG
* * * * *
1976618 AACAATTACAAAACAATCCATAATTTTTCCAAATTGCTAATTTGGTCATTTAATTTATAAAAAAT
391 AACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAAT
* * * *
1976683 TCTAAAATAGTCCCCAAATTTTTCTATGGCTTGTAGAATACTTACAATATCATTTCAAGCCCCTG
456 TATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTA
* *
1976748 CATAAGTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTTTGTGTCCAAGACAAGGGTTTTCA
521 CATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCA
* * *
1976813 TGATTTTTCTAGATTTTGATTCGATTTAAGCATGAAATCGACCTCTATTCAACCTTATAAAATCT
586 TGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCT
* * * *
1976878 CTATAATCAAAACCCTAACTTAATTTCATCAAAACACATATTTCTCCCAAGATTAGGGTTAGGAT
651 CTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGCT
* * * *
1976943 AAAACTTCATATGTTCATATGATCATGTATAAATGCTTTTAATAATCATTCATGCTTGAAAATGA
716 GAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAATGA
* *
1977008 TTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCTTAAGGTT
781 TTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
* * * *
1977063 AGCTTAAACCCACTTAACTTTCAAAATTTACATTTTGGTTATTGA-CACAAATTTTGGGGTATTA
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCA-AAATTTTGGGCTATTA
* * *
1977127 TAAAACATATATAAATTCAAACCAAATGTTAGAATATTACTAACATACGCATACTTTGGAAAATA
65 CAAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATA
* * * *
1977192 AATTCCTAACAAAATTTCCTATGCTTATTTGATACAATTGTCATGTGACAACATAAATGTTGATC
130 AATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATC
* * * *
1977257 TTAATACTTCTAATTAACAACTCAAGGTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTA
195 TTAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTA
* *
1977322 AGCTCACATTATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCA
260 AGCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCA
* *
1977387 ATTTCACATGCGAAATTCAATTTCAACGCTCAAACATTAATTTTCAACATGGTACATAAACTATT
325 ATTTCACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATT
* * * * *
1977452 AAACAATTACAAAATAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTGCAAAGA
390 GAACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAA
* * * * *
1977517 TTATAAAAAAAGTCCCCAAATTTTTCTAACGCTTATAAAATACTTACAACATCATTTCAGGCCCC
455 TTAT-AAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCC
* * * *
1977582 TACGTAATTTTTCTTATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGCCAAGGATTTT
519 TACATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTT
* * * * *
1977647 CATAATTTTACTCGATTTTGATTCAATTTAAGAATGAAATCGACCTCTATCCAACCTTATAAAAT
584 CATGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAAT
1977712 CTCTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGG
649 CTCTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGG
* * * *
1977777 CTGAAACTTCATATGCTCATATGATCAGGTACAAATACTTTTAATCATCAATCATGCTTGGAAAT
714 CTGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAAT
* *
1977842 GATTCTACAACCTCAATAACATCAAAATCCTTCATCTATTCCATAAACCCTAAGGTG
779 GATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
* * *
1977899 AACTTAAACCCACTTAACTTTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGTTATTAC
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
* * *
1977964 AAAACATAAAGAAATTCAAACCAAATGTTAGAATCTTACTAATATACGCGTACTTTGGAAAATAA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
*
1978029 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTCTCATGTGACAAGATAAATGTTGATCT
131 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
* *
1978094 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAATATTTTGCACTTAA
196 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
* * *
1978159 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAAGTTTTACATGGTTTTCAAAATAATCCAA
261 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
*
1978224 -TTCAACATGCGAACTTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATT
326 TTTC-ACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATT
** * *
1978288 GAACAATTACACAACAATCCATAACTTTTCCATTTTTCTACTTTGGTCCTTTAATTTTTCAAAAA
390 GAACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAA
* * *
1978353 TTATAGAATAGTCCCAAAATTTTTCTAAGGCTTGTAAAATACTTACAACATCATTTCAAGCCCCT
455 TTATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCT
* * *
1978418 ACATAATTTTTCTCATCCTCTATTGTCAAGGTCGAATGCTTTATGTGTTCAAGACAAGGGTTTTC
520 ACATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTC
* * *
1978483 ATGATTTTACTCGATTTTAATTCGATTTAAGCATGAAATCGACCTCTCTTCAGCCTTATTAAATC
585 ATGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATC
* *
1978548 TCTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCGAAGATTAAGGTTAGGC
650 TCTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGC
* *
1978613 TGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCACGCTTGGAAATG
715 TGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAATG
* *
1978678 ATTCTACAAACTCAATAACATCAAAATCCTTCATCAAATCCATAAACCTTAAGGTG
780 ATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
* * *
1978734 AACTTAAACCCACTTAACATTCAAAATTTACATTTTGATTATTGACCAAAATTTTGGGGTATTAC
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
* *
1978799 AAAACATATAGAAATTCAAACCATATGTTAGAATATTACTAACATACGCATACTTTGGAAAATAA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
* * * * * * * * *
1978864 ATTCCTAACAAATATTCCTATGCTTATTTGATACAATTCTCATGTGATAACATAATTGATAATTT
131 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
* * *
1978929 TAATACTTCTAATTGACCACTCAAGTTCCTTTTTATCCAAACTTAACATAACATGTTTCACTTAA
196 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
* *
1978994 GCT-CC--CA--TCC----TTGTGATTGAAACCTCAACTTTTACAAGGTTTCCCAAATAATACAA
261 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
* * ** ** *
1979050 TTTCAAATGCGAACTTCAATTTCAACACTCAAACATTAATTTTCAGCATGGTACATAGGCTATTA
326 TTTCACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTG
* * ** *
1979115 AACAATTACACAACAATTCATAACTTTGCCATTTTGCTAATTTGGTCCATTAATTTTTCAAAAAT
391 AACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAAT
*
1979180 TATAGAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTA
456 TATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTA
* *
1979245 CATAATTTTTCTCATCCTCTATAGTCAAGGTCGAAAGCTTTGTGTGTTCAAGACAAGGGTTTTCA
521 CATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCA
*
1979310 TGATTTTACTAGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCT
586 TGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCT
* * * *
1979375 CTATAATCAAAA-CTCTAACTTAATTTAATCAAAACACATATTTCTCCCTAGATTAGGGTTAGGC
651 CTATAATCAAAACCT-TAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGC
*
1979439 TGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCACGCTTGAAAATG
715 TGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAATG
*
1979504 ATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGCTG
780 ATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
*
1979560 AACATAAACCAACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTAGGG-TATTA
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTT-GGGCTATTA
*
1979624 CAAAACATATAGAAATTCAAACCAAATGTTATAA-CTTACTAACATACGCATACTTTGGAAAATA
65 CAAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATA
* * * *
1979688 AATTCCTAACAAATTTTCCTATGCTTATTTGATACAATTCTCATGTGACAACATTAATGTTGATC
130 AATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATC
* *
1979753 TTAATACTTCTAATTAACCACTCAAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTA
195 TTAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTA
* * * *
1979818 AACTCCCATCATTTCCATATTTGTGATTGAAACCTTAACTTTTATAA-TTTTCCAAAATAATCCA
260 AGCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCA
* * * * *
1979882 ATTTCACATGCGAAATTCAATTTCAACGCTCAAAGAATAATATTCAGCATGGTACATAAACTACT
325 ATTTCACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATT
* *
1979947 GAACAATTACACAATAATCCATAACTTTTCCAAATTGCTAATTTAGTCCTTTAATTTTTCAAAAA
390 GAACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAA
*
1980012 TTATAAAATAGTCCCCCAAATTTTTCTAAGGCTTGTAGAATACATACAACATCATTTCAAGCCCC
455 TTATAAAATAGT-CCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCC
*
1980077 TACATAATTTTTCTCATCCTCTATAGTCAAGGTTGAATGCTTTGTGTGTCCAAGACAAGGGTTTT
519 TACATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTT
* * *
1980142 CATGATTTTACTCGATTTTGATTCGATTTAAGCATGAAACCGACCTCTATTCAACGTTATAAAAT
584 CATGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAAT
*
1980207 CTCTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTCCCCAAGATTAGGGTTAGG
649 CTCTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGG
* * *
1980272 TTGAAACTTCATATGTTCATATGATCAGGTACAAATGCTTTTAATCATCAATCATGCTTGGAAAT
714 CTGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAAT
* *
1980337 GATTCTACAACCTCAATAACATCAAAATCCTTCATCTAATCCATAAATCCTAAGGTG
779 GATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
* * *
1980394 AACTTAAACCCACTTAACTTTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGGTATTAC
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
*
1980459 AATA-ATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
* * *
1980523 ATTCCTAACAAATTTTCCTATGCTTATTTGATACAATTCTCATGTGACAACATAAATGTTGATCT
131 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
* *
1980588 TAATACTTCTAATTAACCACTCAAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
196 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
*
1980653 GCTCCCATCATTTCCATATTTGTGATTGAAACATCAACTTTTACAAGGTTTCCAAAATAATCCAA
261 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
* * * * *
1980718 TTTCTCATGTGAAATTCAATTTTAACGCTCAAACATTAATTTTTAGCATGGTACATAAACTATTG
326 TTTCACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTG
* *
1980783 AACAATTACAAAACAATCCATAACTTTTCCAAATTGCTAATTTAGTCCTTTAATTTTTCAAAAAT
391 AACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAAT
* *
1980848 TATAAAATAGTCCCCAAATTTGTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGACCCTA
456 TATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTA
* * *
1980913 CATAATTTTTCTCATCCTCTATAGTTAAGGTTGAATGCTTTGTGAGTCCAAGACAAGGGTTTTCA
521 CATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCA
*
1980978 TGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCCCTCTTCAACCTTATAAAATCT
586 TGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCT
* * * *
1981043 CTATAATCAAAA-CTCTAACTTAATTTCATCAAAACACATATTTCTCGCTAGATTAGGGTTAGGC
651 CTATAATCAAAACCT-TAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGC
1981107 TGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAATG
715 TGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAATG
*
1981172 ATTCTACAACCTCGATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
780 ATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
*
1981228 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACC-AAATTTTAGGCTATTAC
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
*
1981292 AAAACATATAGAAATTCAAACCAAATGTTATAA-CTTACTAACATACGCATACTTTGGAAAATAA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
* * *
1981356 ATTCCTAACAAATTTTCCTATGCTTATTTGATACAATTCTCATGTGACAACATAAATGTTGATCT
131 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
* * * * *
1981421 TAAAACTTCTAATTAACCACTCAAGTTCCTTTTTATCTCAACTTAAGATAACATTTTTCACTTAA
196 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
* * * * *
1981486 GCTCCAATCATTTCCATATTTGAGATTGAAACCTCAACTTTTTCAAGGCTTCGAAAATAATCCAA
261 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
* * * *
1981551 TTTCACATGCGAAATTCAATTTCAACG-TTAAACATTAATTTTTAGCATGGTACATAAACTATTA
326 TTTCACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTG
* * *
1981615 AACAATTACACAAAAATCCATAACTTTTAC-AATTGCTAATTTGGTCCTTTAATTTATCAAAAAT
391 AACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAAT
* ** * *
1981679 TCTAAAATAGTCCCCAAATTTTTCTAAGTATTGTAGAATACTTACAACATCATTTCAAGACCCTG
456 TATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTA
*
1981744 CATAATTTTTCTCATCCTATATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCA
521 CATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCA
* *
1981809 TGATTTTACTCGATTTTGATTCAATTTAAGCATGAAATCGACCTCTATTCAACCTTATAAAATCT
586 TGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCT
* * * * *
1981874 ATATAATCAAAACCCTAACTTAATTTCATCAAAACACATATTTCTCCCAAGATTAGGGTTAGGAT
651 CTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGCT
* * *
1981939 AAAAGTTCATATGTTCATATGATCATGTACAAATGCTTTTAATAATCAATCATGCTTGAAAATGA
716 GAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAATGA
*
1982004 TTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCTTAAGGTG
781 TTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
* * * * * * * *
1982059 AGCTTAAACCCACTTAACTTTTAAAATATACATTTTGGTTAATGACCAAAATTTTGGGGTATTAT
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
* *
1982124 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAATATAAGCATACTTTGGAAAATAA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
* * * *
1982189 ATTCCTAACAAAATTTCCTATGCTTATTTGATACAATTGTCATGTGACAACATAAATGTTGATCT
131 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
* *
1982254 TAATACTTCTAATTAACCACTCAAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
196 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
* *
1982319 GCTCCCATTATTTCCATATTTGTGATTGAAACCTCAACTTTTAGAAGGTTTCCAAAATAATCCAA
261 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
* * *
1982384 TTTCACATGCGAAATTCAATTTCAACGCTCAAACATTAATTTTCAGCATGGTACATAAACTAGTA
326 TTTCACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTG
* * * * *
1982449 AACAATTACAAAACAATCCATAATTTTTCCAAATTGTTAATTTGGTCATTTAATTTATCAAAAAT
391 AACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAAT
* * * *
1982514 TCTAAAATAGTCCCCAAATTTTTCTATGGCTTGTAGAATACTTACAATATCATTTCAAGCCCCTG
456 TATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTA
* * *
1982579 CATAAGTTTTCTCATCCTCTATAGTCAAGGCCGAATGCTTTTTGTGTCCAAGACAAGGGTTTTCA
521 CATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCA
* * *
1982644 TGATTTTTCTAGATTTTGATTCGATTTAAGCATGAAATCGACCTCTATTCAACCTTATAAAATCT
586 TGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCT
* * * * *
1982709 TTATAATCAAAACCCTAACTTAATTTCATCAAAACACATATTTCTCCCAAGATTAGGGTTAGGAT
651 CTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGCT
* *
1982774 AAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATAATCAATCATGCTTGAAAATGA
716 GAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAATGA
*
1982839 TTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCTTAAGGTG
781 TTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
* * * *
1982894 AGCTTAAACCCACTTAACTTTCAAAATTTACATTTTGGTTATTGA-CACAAATTTTGGGGTATTA
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCA-AAATTTTGGGCTATTA
* *
1982958 TAAAACATATAGAAATTCAAACCAAATGTTAGAATATTACTAACATACGCATACTTTGGAAAATA
65 CAAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATA
* * * *
1983023 AATTCCTAACAAAATTTCCTATGCTTATTTGATACAATTGTCATGTGACAACATAAATGTTGATC
130 AATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATC
* *
1983088 TTAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAATATTTTGCACTTA
195 TTAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTA
* * *
1983153 AGCTCCCATCATTTCCATATTTGTGATTGAAACCTCAAGTTTTACATGGTTTTCAAAATAATCCA
260 AGCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCA
*
1983218 A-TTCAACATGCGAACTTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTAT
325 ATTTC-ACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTAT
** * * * *
1983282 TGAACAATTACACAACAATCCATAACTTTTCCATTTTGCTACTTTGTTCCTTTAATTTTGCAAAG
389 TGAACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAA
* * * * *
1983347 ATTATAAAAAAAGTCCCCAAATTTTTCTAACGCTTATAAAATACTTACAACATCATTTCAGGCCC
454 ATTAT-AAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCC
* * * *
1983412 CTACGTATTTTTTCTCATCCTCCATAGTCAAGGTCGAATGCTTTGTGTGTCCAAG-CTAAGGATT
518 CTACATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGAC-AAGGGTT
* * * * *
1983476 TTCATAATTTTACTCGATTTTGATTCAATTTAAGAATGAAATCGACCTCTATCCAACCTTATAAA
582 TTCATGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAA
1983541 ATCTCTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTA
647 ATCTCTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTA
* * * *
1983606 GGCTGAAACTTCATATGCTCATATGATCAGGTACAAATACTTTTAATCATCAATCATGCTTGGAA
712 GGCTGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAA
* *
1983671 ATGATTCTACAACCTCAATAACATCAAAATCCTTCATCTATTCCATAAACCCTAAGGTG
777 ATGATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
* * * *
1983730 AACTTAAACCCACTTAACTTTCAAAATTTACATTTTGGTTGTTGACCAAAATTTTGGGTTATTAC
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
* * *
1983795 AAAACATAAAGAAATTCAAACCAAATGTTAGAATCTTACTAATAAACGCATACTTTGGAAAATAA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
* *
1983860 ATTCCTAACAAATTTTCCTATACTTATTTGATATAATTCTCATGTGACAAGATAAATGTTGATCT
131 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
* *
1983925 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAATATTTTGCACTTAA
196 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
* * *
1983990 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAAGTTTTACATGGTTTTCAAAATAATCCAA
261 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
*
1984055 -TTCAACATGCGAACTTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATT
326 TTTC-ACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATT
** *
1984119 GAACAATTACACAACAATCCATAACTTTTCCATTTTGCTACTTTGGTCCTTTAATTTTTCAAAAA
390 GAACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAA
* *
1984184 TTATAAAATAGTCCCAAAATTTTTCTAAGGCTTGTAAAATACTTACAACATCATTTCAAGCCCCT
455 TTATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCT
* * *
1984249 ACATAATTTTTCTCATCCTCTATTGTCAAGGTCGAATGCTTTATGTGTTCAAGACAAGGGTTTTC
520 ACATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTC
* * *
1984314 ATGATTTTACTCGATTTTAATTCGATTTAAGCATGAAATCGACCTCTCTTCAGCCTTATTAAATC
585 ATGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATC
* *
1984379 TCTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCGAAGATTAAGGTTAGGC
650 TCTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGC
** *
1984444 TGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCACACTTGGAAATG
715 TGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAATG
* *
1984509 ATTCTACAAACTCAATAACATCAAAATCCTTCATCAAATCCATAAACCTTAAGGTG
780 ATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
* * *
1984565 AACTTAAACCCACTTAACATTCAAAATTTACATTTTGATTATTGACCAAAATTTTGGGGTATTAC
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
* *
1984630 AAAACATATAGAAATTCAAACCATATGTTAGAATATTACTAACATACGCATACTTTGGAAAATAA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
* * * * * * * * *
1984695 ATTCCTAACAAATATTCCTATGCTTATTTGATACAATTCTCATGTGATAACATAATTGATAATTT
131 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
* * *
1984760 TAATACTTCTAATTGACCACTCAAGTTCCTTTTTATCCAAACTTAACATAACATGTTTCACTTAA
196 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
* *
1984825 GCT-CC--CA--TCC----TTGTGATTGAAACCTCAACTTTTACAAGGTTTCCCAAATAATACAA
261 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
* * ** ** *
1984881 TTTCAAATGCGAACTTCAATTTCAACACTCAAACATTAATTTTCAGCATGGTACATAGGCTATTA
326 TTTCACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTG
* * ** *
1984946 AACAATTACACAACAATTCATAACTTTGCCATTTTGCTAATTTGGTCCATTAATTTTTCAAAAAT
391 AACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAAT
*
1985011 TATAGAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTA
456 TATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTA
* *
1985076 CATAATTTTTCTCATCCTCTATAGTCAAGGTCGAAAGCTTTGTGTGTTCAAGACAAGGGTTTTCA
521 CATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCA
*
1985141 TGATTTTACTAGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCT
586 TGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCT
* * *
1985206 CTATAATCAAAA-CTCTAACTTAATTTCATCAAAACACATATTTCTCCCTAGATTAGGGTTAGGC
651 CTATAATCAAAACCT-TAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGC
*
1985270 TGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCACGCTTGAAAATG
715 TGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAATG
*
1985335 ATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGCTG
780 ATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
*
1985391 AACATAAACCAACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTAGGG-TATTA
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTT-GGGCTATTA
* * * *
1985455 CAAAACATATAGAAATTCTAACCAAATGTTATAA-CTTACTAACTTACGCATACTTTGGAAAACA
65 CAAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATA
* * * *
1985519 AATTCCTAACAAA-TTTCCTATGCTTATTTGATACAATTCTCATGTGACAACATTAATGTTGATC
130 AATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATC
* *
1985583 TTAATACTTCTAATTAACCACTCAAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTA
195 TTAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTA
* * *
1985648 AACTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTATAA-TTTTCCAAAATAATCCA
260 AGCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCA
* * * * *
1985712 ATTTCACATGCGAAATTCAATTTCAACGCTCAAAGAATAATATTCAGCATGGTACATAAACTACT
325 ATTTCACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATT
* *
1985777 GAACAATTACACAATAATCCATAACTTTTCCAAATTGCTAATTTAGTCCTTTAATTTTTCAAAAA
390 GAACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAA
* * *
1985842 TTATAAAATAGTCCCCAAATTATTCTAAGGCTTGTAGAATACTTACAACATCATTTTAATCCCCT
455 TTATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCT
* * * *
1985907 ACATGATTTTTCTCATCCTCTATAGTCAAGGTTGAATGCTTTGTGAGTCCAAGACAAGGGTTTCC
520 ACATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTC
* * *
1985972 ATGATTTTACTCGATTTTGATTCGATTTAAGTATGAAATCGACATCTATTCAACCTTATAAAATC
585 ATGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATC
* * * *
1986037 TCTATAATCAAAACCTTAATTTAATTTCATTAAAACAAATATTTTTCCCAAGATTAGAGTTAGGT
650 TCTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGC
* * *
1986102 TGAAACTTCATATGTTCATATGATCAGGTACAAATGCTTTTAATCATCAATCACGCTTGGAAATG
715 TGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAATG
* * *
1986167 ATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCTATAGACCTTAAGGTG
780 ATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
* * ** *
1986223 AACATAAACACACCTAATTTTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGGTATTAC
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
*
1986288 AATA-ATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
* * *
1986352 ATTCCTAACAAATTTTCCTATGCTTATTTGATAAAATTCTCATGTGACAACATAAATGTTGATCT
131 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
* *
1986417 TAATACTTCTAATTAACCACTCAAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
196 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
*
1986482 GCTCCCATCATTTCCATATTTGTGATTGAAACATCAACTTTTACAAGGTTTCCAAAATAATCCAA
261 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
* * * * *
1986547 TTTCTCATGCGAAATTCAATTTTAACGCTCAAACATTAATTTTTAGCATGGTACATAAAGTATTG
326 TTTCACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTG
*
1986612 AACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTAGTCCTTTAATTTTTCAAAAAT
391 AACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAAT
*
1986677 TATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACATACAACATCATTTCAAGCCCCTA
456 TATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTA
*
1986742 CATAATTTTTCTCATCCTCTATAGTCAAGGTTGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCA
521 CATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCA
* * *
1986807 TGATTTTACTCGATTTTGATTCGATTTAAGCATGAAACCGACCTCTATTCAACGTTATAAAATCT
586 TGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCT
* *
1986872 CTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGTGTTAGGTT
651 CTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGCT
* *
1986937 GAAACTTCATATGTTCATATGATCAGGTACAAATGCTTTTAATCATCAATCATGCTTGGAAATGA
716 GAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAATGA
* *
1987002 TTCTACAACCTCAATAACATCAAAATCCTTCATCTAATCCATAAATCCTAAGGTG
781 TTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
* * *
1987057 AACTTAAACCCACTTAACTTTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGGTATTAC
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
* *
1987122 AATA-ATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAGTAA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
* * *
1987186 ATTCCTAACAAATTTTCCTATGCTTATTTGATACAATTCTCATGTGACAACATAAATGTTGATCT
131 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
* * **
1987251 TAATACTTCTAATTAACCACTCAAGTTCCTTTTTATATCAACTTAACATAACATTTTTCACTTAA
196 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
*
1987316 GCTCCCATCATTTCCATATTTGTGATTGAAACATCAACTTTTACAAGGTTTCCAAAATAATCCAA
261 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
* * * *
1987381 TTTCTCATGCGAAATTCAATTTTAACGCTCAAACATTAATTTTTAGCATGGTACATAAACT-TTG
326 TTTCACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTG
* *
1987445 AACAATTACACAACAATCCATAACTTTTCAAAATTGCTAATTTAGTCCTTTAATTTTTCAAAAAT
391 AACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAAT
* *
1987510 TATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACATCATCATTTCAATCCCCTA
456 TATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTA
*
1987575 CATAATTTTTCTCATCCTCTATAGTCAAGGTTGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCA
521 CATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCA
* * * *
1987640 TGATTTTACTCTATTTTGATTCGATTTAAGCATAAAATCGACCTTTATTCAACCTTATAAAATCT
586 TGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCT
*
1987705 CTATATTCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGCT
651 CTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGCT
* * * *
1987770 GAAACTTTATATGTTCATATGATCAGGTAAAAATGCTTTTAATCATCAATCATGCTTGGAAATGA
716 GAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAATGA
*
1987835 TTCTACAACCTCAATAACATCAAAATCCTTCATCGAATCCATAAACCCTAAGGTG
781 TTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
* * *
1987890 AACTTAAACCCACTTAACCTTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGTTATTAC
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
* * *
1987955 AAAACATAAAGAAATTCAAACCAAATGTTAGAATCTTACTAATATACGAATACTTTGGAAAATAA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
*
1988020 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTTATCT
131 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
*
1988085 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAATATTTTTCACTTAA
196 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
* ** *
1988150 GCTCCCATCATTTCCATATTTGTGAATGAAACCTCAACTTTTACAAGGTTTTTAAAATATTCCAA
261 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
*
1988215 TTTCACATGCGAACTTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTG
326 TTTCACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTG
* * ** *
1988280 AACAATTACACAACAATTCATAAATTTTCCATTTTGCTAATTTGGTCCATTAATTTTTCAAAAAT
391 AACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAAT
*
1988345 TATAGAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTA
456 TATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTA
* * * *
1988410 CATAATTTTTCTCATCCTCTATTGTCAAGGTCGAATGCTTTGCGTGTTCAAGATAAGGGTTTTCA
521 CATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCA
*
1988475 TGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCCCTCTTCAACCTTATAAAATCT
586 TGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCT
* * * *
1988540 CTATATTGAAAACCTTATCTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAAGGTTAGGCT
651 CTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGCT
* *
1988605 GAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCAAGCTTGGAAATGA
716 GAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAATGA
* *
1988670 TTCTACAAACTCAATAACATCAAAATCCTTCATCAAATCCATAAACCTTAAGGTG
781 TTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
* *
1988725 AACATAAACCCACTTAACTTTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGTTATTAC
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
* * *
1988790 AAAACATAAAGAAATTCAAACCAAATGTTAGAATCTTACTAATATACGAATACTTTGGAAAATAA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
*
1988855 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTTATCT
131 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
*
1988920 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAATATTTTTCACTTAA
196 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
* ** *
1988985 GCTCCCATCATTTCCATATTTGTGAATGAAACCTCAACTTTTACAAGGTTTTTAAAATATTCCAA
261 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
*
1989050 TTTCACATGCGAACTTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTG
326 TTTCACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTG
* * ** *
1989115 AACAATTACACAACAATTCATAAATTTTCCATTTTGCTAATTTGGTCCATTAATTTTTCAAAAAT
391 AACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAAT
*
1989180 TATAGAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTA
456 TATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTA
* * *
1989245 CATAATTTTTCTCATCCTCTATTGTCAAGGTCGAATGCTTTGTGTGTTCAAGATAAGGGTTTTCA
521 CATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCA
1989310 TGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCT
586 TGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCT
* * * *
1989375 CTATAATCAAAA-CTCTAACTTAATTTCATCAAAACACATATTTCTCGCTAGATTAGGGTTAGGC
651 CTATAATCAAAACCT-TAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGC
* *
1989439 TGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCAAGCTTGGAAATG
715 TGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAATG
* *
1989504 ATTCTACAAACTCAATAACATCAAAATCCTTCATCAAATCCATAAACCTTAAGGTG
780 ATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
* *
1989560 AACATAAACCCACTTAACTTTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGTTATTAC
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
* * *
1989625 AAAACATAAAGAAATTCAAACCAAATGTTAGAATCTTACTAATATACGAATACTTTGGAAAATAA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
1989690 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
131 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
* *
1989755 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAATATTTTGCACTTAA
196 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
* * *
1989820 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAAGTTTTACATGGTTTTCAAAATAATCCAA
261 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
* *
1989885 -TTCAACATGCGAACTTCAATTTCAATGCTCAAACATTAATTTTCAGCATGATACATAAACTATT
326 TTTC-ACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATT
*
1989949 GAACAATTACACAACAATCCATAACTTTTCC-ATTTGGCTAATTTGGTCCTTTAATTTTTCAAAA
390 GAACAATTACACAACAATCCATAACTTTTCCAAATT-GCTAATTTGGTCCTTTAATTTTTCAAAA
* * * * *
1990013 AGTATAGAATAGTCCCAAAATTTTTCTAAGGCTTGTAAAATACTTACAACATCATTTCAATCCCC
454 ATTATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCC
* * *
1990078 TACATAATTTTTCTCATCCTCTATTGTCAAGGTCGAATGCTTTGTGTGTTCAAGATAAGGGTTTT
519 TACATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTT
*
1990143 CATGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCCCTCTTCAACCTTATAAAAT
584 CATGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAAT
* * * *
1990208 CTCTATATTGAAAACCTTATCTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAAGGTTAGG
649 CTCTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGG
1990273 CTGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAAT
714 CTGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAAT
* *
1990338 GATTCTATAACCTCGATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
779 GATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
*
1990395 AACATAAACCCACTTAACATTCAAAATTTA-ATTTTGGTTATTGACC-AAATTTTAGGCTATTAC
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
*
1990458 AAAACATATAGAAATTCAAACCAAATGTTATAA-CTTACTAACATACGCATACTTTGGAAAATAA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
* * * *
1990522 ATTCCTAACAAAATTTCCTATGCTTATTTGATACAATTGTCATGTGACAACATAAATGTTGATCT
131 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
* * * *
1990587 TAATACTTCTAATTAACAACTCAAGTTCCTTTTTAACCCAACTTAACATAACATTTTTCACTTAA
196 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
* * *
1990652 GCTCACATTATTTCCATATTTGTGAATGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
261 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
*
1990717 TTTCACATGCGAAATTCAATTTCAACGCTCAAACATTAATTTTTCAGCATGGTACATAAACTATT
326 TTTCACATGCGAAATTCAATTTCAATGCTCAAACATTAA-TTTTCAGCATGGTACATAAACTATT
* * * *
1990782 AAACAATTACAAAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTACAAAGA
390 GAACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAA
*
1990847 TTATAAAATAGTCCCCAAATTTTTCTAAGGCTTATAGAATACTTACAACATCATTTCAAGCCCCT
455 TTATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCT
* * * *
1990912 ACGTAATTTTTCTCATACTCCATAGT-AATGGTCGAATGCTTTGTGTGTCCAAGGCAAGGGTTTT
520 ACATAATTTTTCTCATCCTCTATAGTCAA-GGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTT
* * * * * *
1990976 CATAATTTTACTCGATTTTGATTCAATTTAAGAATGAAATCGACCTCTATCCAAGCTTATAAAAT
584 CATGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAAT
*
1991041 ATCTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGG
649 CTCTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGG
* * *
1991106 CTGAAACTTCATATGTTCATATGATCAAGTACAAATACTTTTAATCATCAATCATGCTTGGAAAT
714 CTGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAAT
* *
1991171 GATTCTACAACATCAATAACATCAAAATCCTTCATCTAATCCATAAACCCTAAGGTG
779 GATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
* * * *
1991228 ACCTTAAACCCACTTAACTTTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGTTATTAC
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
* *
1991293 AAAACATAAAGAAATTCAAACC-AATGTTAGAATCTTACTAATATACGCATACTTTGGAAAATAA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
*
1991357 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTCTCATGTGACAAGATAAATGTTGATCT
131 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
* *
1991422 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAATATTTTGCACTTAA
196 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
* * *
1991487 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAAGTTTTACATGGTTTTCAAAATAATCCAA
261 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
* *
1991552 -TTCAACATGCGAACTTCAATTTCAATGCTCAAACATTAATTTTCAGCATGATACATAAACTATT
326 TTTC-ACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATT
*
1991616 GAACAATTACACAACAATCCATAACTTTTCC-ATTTGGCTAATTTGGTCCTTTAATTTTTCAAAA
390 GAACAATTACACAACAATCCATAACTTTTCCAAATT-GCTAATTTGGTCCTTTAATTTTTCAAAA
* * * * *
1991680 AGTATAGAATAGTCCCAAAATTTTTCTAAGGCTTGTAAAATACTTACAACATCATTTCAATCCCC
454 ATTATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCC
* *
1991745 TACATAATTTTTCTCATCCTCTATTGTCAAGGTCGAATGCTTTGTGTGTTCAAGACAAGGGTTTT
519 TACATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTT
* *
1991810 CATTATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATTAAAT
584 CATGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAAT
* *
1991875 CTCTATAATCAAAACCTTAACTTAATTTCATCAAAAAAAATATTTTTCCCAAGATTAAGGTTAGG
649 CTCTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGG
* * *
1991940 TTGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAGTCATGCTTGGAAAT
714 CTGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAAT
* *
1992005 GATTCTACAAACTCAATAACATCAAAATCCTTCATCAAATCCATAAACCTTAAGGTG
779 GATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
* * * * *
1992062 AACTTAAACCCCCTTAACTTTCAAAATTTACATTTTGATTATTGACCAAAATTTTGGGGTATTAC
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
* *
1992127 AAAACATATAGAAATTCAAACCAAATGCTAGAATATTACTAACATACGCATACTTTGGAAAATAA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
* * * * * *
1992192 ATTCCTAACAAATATTCCTATGCTTATTTGATACAATTCTCATGTGACAACATAATTGTTAATCT
131 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
* * * *
1992257 TAATACTTCTAATTTACCACTCAAGTTCCTTTTTATCCAAACTTAACATAACATGTTTCACTTAA
196 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
* * *
1992322 GCTCCCATCCTTTCCATATTTATGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATACAA
261 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
* * ** * ** *
1992387 TTTCAAATGCGAACTTCAATTTCAACACTCAAACATTAATTTTCAGCATGGTAAATAGGCTATTA
326 TTTCACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTG
* * * * *
1992452 AACAATTACACAACAATCCAAAAATTTTCCAAATTACTAAATTGGTCCTTTAATTTTTCAAAATT
391 AACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAAT
* * *
1992517 TATAGAATAATCCCCAAATTTTTCAAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTA
456 TATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTA
*
1992582 CATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTTCAAGACAAGGGTTTTCA
521 CATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCA
1992647 TGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCT
586 TGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCT
* * * *
1992712 CTATAATCAAAA-CTCTAACTTAATTTAATCAAAACACATATTTCT-CCTAGATTAGGGTTAGGC
651 CTATAATCAAAACCT-TAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGC
*
1992775 TGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCACGCTTGAAAATG
715 TGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAATG
*
1992840 ATTTTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
780 ATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
*
1992896 AACATAAACCCACTTAATATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTAGGG-TATTA
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTT-GGGCTATTA
*
1992960 CAAAACATATAGAAATTCAAACCAAATGTTATAA-CTTACTAACATACGCATACTTTGGAAAATA
65 CAAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATA
* * *
1993024 AATTCCTAACAAATTTTCCTATGCTTATTTGATACAATTCTCATGTGACAACATAAATGTTGATC
130 AATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATC
* * * * *
1993089 TTAAAACTTCTAATTAACCACTCAAGTTCCTTTTTATCTCAACTTAAGATAACATTTTTCACTTA
195 TTAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTA
* * *** *
1993154 AGCTCCCATCATTTCCATATTTGAGATTGAAACATCAACTTTTTGGAGGCTTCCAAAATAATCCA
260 AGCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCA
* * * *
1993219 ATTTCACATGCGAAAATCAATTTCAACGTTTAAACATTAATTTTCAGCATGGTACATAAACTATT
325 ATTTCACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATT
* * ** * *
1993284 AAACAATTACACAAAAATCCATAAC-TTTCTTAATTGCTAATTTTGTCCTTTAATTTATCAAAAA
390 GAACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAA
* * *
1993348 TTCTAAAATGGTCCCCAAATTTTTCT-AGGTATTGTAGAATACTTACAACATCATTTCAAGCCCC
455 TTATAAAATAGTCCCCAAATTTTTCTAAGG-CTTGTAGAATACTTACAACATCATTTCAAGCCCC
*
1993412 TGCATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTT
519 TACATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTT
* * * *
1993477 CATGATTTTACTCTATTTTGATACAATTTAAGCATGAAATCGACCTCTATTCAACCTTATAAAAT
584 CATGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAAT
* **** * * * *
1993542 CTCTATAATCAAAACCCTAACTTAATTTCATTTTGCTACATAA-ACTTTT-CCATGGTACATAAA
649 CTCTATAATCAAAACCTTAACTTAATTTCA--TCAAAACA-AATATTTTTCCCA----AGATTAG
** * * * * * * *
1993605 CTTTCA-GCATG---GTACAAAAGCTTGGAAATGATCATGTACAAATGCTTTTAATAATCAATCA
707 GGTT-AGGC-TGAAACTTCATATG-TT-CATATGATCATGTACAAATGCTTTTAATCATCAATCA
* * *
1993666 TGATTGGAAATGATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCTTAAG
768 TGCTTGAAAATGATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAG
1993731 GTG
833 GTG
* * ** * *
1993734 AGCTTAAACCCACTTAATTTTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGGTATTAT
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
*
1993799 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATAAGCATACTTTGGAAAATAA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
* * * * * *
1993864 ATTCCAAACAAATTATCCTATGCTTATTTGATACAATTGTCATGTGACAACATAAATTTTGATCT
131 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
* *
1993929 TAATACTTCTAATTAACCACTCAAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
196 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
*
1993994 GCTCCCATTATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
261 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
* * *
1994059 TTTCACATGCGAAATTCAATTTCAACGCTCAAACATTAATTTTAAGCTTGGTACATAAACTATTG
326 TTTCACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTG
* * *
1994124 AATAATTACAAAATAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTC------
391 AACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAAT
1994183 -----AA-AG-------ATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAG-CCCTA
456 TATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTA
*
1994234 CATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTTCAAGACAAGGGTTTTCA
521 CATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCA
1994299 TGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCT
586 TGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCT
* * *
1994364 CTATAATCAAAA-CTCTAACTTAATTTAATCAAAACACATATTTATCCCAAGATTAGGGTTAGGC
651 CTATAATCAAAACCT-TAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGC
*
1994428 TGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCACGCTTGAAAATG
715 TGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAATG
1994493 ATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
780 ATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
*
1994549 AACATAAACCCACTTAACATTCAAAATTTACATTTTAGTTATTGACCAAAATTTTAGGG-TATTA
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTT-GGGCTATTA
* *
1994613 CAAAACAT-TAAAAAATTCAAACCAAATGTTATAA-CTTACTAACATACGCATACTTTGGAAAAT
65 CAAAACATAT-AGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAAT
* * *
1994676 AAATTCCTAACAAATTTTCCTATGCTTATTTGATACAATTCTCATGTGACAACATAAATGTTGAT
129 AAATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGAT
* * * * *
1994741 CTTAATACTTCTAATTAACCACTCAAGTTCCTTTCTATCTCAACTTAAGATAACATTTTTCACTT
194 CTTAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTT
* * * *
1994806 AAGCTCACATCATTTCCATATTTGAGATTGAAACCTCAACTTTTTCAAGGCTTCCAAAATAATCC
259 AAGCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCC
* * * *
1994871 AATTTAACATGCGAAATTCAATTTCAACGTTTAAACATTAATTTTCAGCATGGTACATAAACTAT
324 AATTTCACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTAT
* * * ** *
1994936 TAAACAATTACACAAAAATCCATACCTTTTCCAAATTGCTAATTTAATCCTTTAATTTATCAAAA
389 TGAACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAA
* ** * *
1995001 ATTCA-AAAATAGTCCCCAAATTTTTTTAAGTATTATAGAATACTTACAAAATCATTTCAAGCCC
454 ATT-ATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCC
* * *
1995065 CTGCATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAACACAAGAGTTT
518 CTACATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTT
* * *
1995130 TCATGATTTTACTCGATTTTGATTCAATTTAAGCATGAAATCGATCTCTATTCAACCTTATAAAA
583 TCATGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAA
* * *
1995195 TCTCTATAATCAAAACCCTAACTTAATTTCATCAAAACACATATTTTTCCTAAGATTAGGGTTAG
648 TCTCTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAG
* *
1995260 GCTGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATAATCAATCATGCTTGGAAA
713 GCTGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAA
* *
1995325 TGATTCTACAACCTCAATAACATCAAAATCCTTCTTCAAATCCATAAACCTTAAGGTG
778 TGATTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
* * * * * **
1995383 AGCTTAAAACCACTTAACTTTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGGTATTGT
1 AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
*
1995448 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATAAGCATACTTTGGAAAATAA
66 AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
* * * * *
1995513 ATTCCAAACAAATTATCCTATGCTTATTTGATACAATTGTCATGTGACAACATAAATGTTGATCT
131 ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
* * *
1995578 TAATACTTCTAATTAACCACTCAAGTACCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
196 TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
* *
1995643 GCTCCCATTATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCAAAAATAATCCAA
261 GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
* *
1995708 TTTCACATTCG--A---AATTT-AAT--T------TT-A-----AGCATGGTACATAAACTATTT
326 TTTCACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTG
* * *
1995753 AACAATTACAAAACAATCCATAACTTTTCCAAATTACTAATTTGGTCCTTTAATTTTTCAAAGAT
391 AACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAAT
* *
1995818 TATAAAATAGTTCCCAAATTTGTT-TAA-GCTTATAGAATACT
456 TATAAAATAGTCCCCAAATTT-TTCTAAGGCTTGTAGAATACT
Statistics
Matches: 30221, Mismatches: 2881, Indels: 1895
0.86 0.08 0.05
Matches are distributed among these distances:
810 2 0.00
811 7 0.00
812 5 0.00
813 18 0.00
814 352 0.01
815 298 0.01
816 18 0.00
817 19 0.00
818 21 0.00
819 17 0.00
820 166 0.01
821 41 0.00
822 5 0.00
823 2 0.00
824 117 0.00
825 218 0.01
826 1217 0.04
827 25 0.00
828 21 0.00
829 13 0.00
830 32 0.00
831 474 0.02
832 1640 0.05
833 5543 0.18
834 7642 0.25
835 8349 0.28
836 1570 0.05
837 21 0.00
838 222 0.01
839 309 0.01
840 59 0.00
841 26 0.00
842 46 0.00
843 19 0.00
844 17 0.00
845 8 0.00
846 19 0.00
847 6 0.00
848 10 0.00
849 12 0.00
850 19 0.00
851 21 0.00
852 16 0.00
853 8 0.00
854 11 0.00
855 4 0.00
856 14 0.00
857 5 0.00
858 2 0.00
859 8 0.00
860 4 0.00
861 23 0.00
862 20 0.00
863 3 0.00
864 5 0.00
865 5 0.00
866 12 0.00
867 2 0.00
869 1 0.00
870 10 0.00
872 2 0.00
873 1 0.00
874 3 0.00
875 5 0.00
876 11 0.00
877 13 0.00
878 11 0.00
879 13 0.00
880 21 0.00
881 9 0.00
882 18 0.00
883 16 0.00
884 34 0.00
885 44 0.00
886 38 0.00
887 26 0.00
888 34 0.00
889 17 0.00
890 13 0.00
891 25 0.00
892 16 0.00
893 14 0.00
894 46 0.00
895 36 0.00
896 42 0.00
897 41 0.00
898 31 0.00
899 36 0.00
900 30 0.00
901 26 0.00
902 28 0.00
903 35 0.00
904 26 0.00
905 21 0.00
906 19 0.00
907 21 0.00
908 19 0.00
909 18 0.00
910 27 0.00
911 23 0.00
912 44 0.00
913 33 0.00
914 32 0.00
915 11 0.00
916 17 0.00
917 11 0.00
918 11 0.00
919 14 0.00
920 12 0.00
921 12 0.00
922 10 0.00
923 7 0.00
924 13 0.00
925 14 0.00
926 12 0.00
927 5 0.00
928 8 0.00
929 7 0.00
930 19 0.00
931 26 0.00
932 27 0.00
933 20 0.00
934 22 0.00
935 29 0.00
936 21 0.00
937 14 0.00
938 13 0.00
939 20 0.00
940 4 0.00
941 2 0.00
942 7 0.00
943 1 0.00
944 5 0.00
945 4 0.00
946 3 0.00
947 3 0.00
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (835 bp):
AACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGCTATTAC
AAAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAA
ATTCCTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATCT
TAATACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAA
GCTCCCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAA
TTTCACATGCGAAATTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTG
AACAATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAAT
TATAAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTA
CATAATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCA
TGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCT
CTATAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGCT
GAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAATGA
TTCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTG
Found at i:1963760 original size:834 final size:835
Alignment explanation
Indices: 1960990--1967999 Score: 11448
Period size: 833 Copynumber: 8.4 Consensus size: 835
1960980 TAGTTTAACA
* * *
1960990 TAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTAGGCTATTACAAAA
1 TAAACCCACTTAACTTTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGGTATTACAAAA
*
1961055 CATATAGAAATTCAAACCAAATGTTATAA-CTTACTAACATACGCATACTTTGGAAAATAAATTC
66 CATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAAATTC
1961119 CTAACAAATTTTCCTATGCTTATTTGATACAATTCTCATGTGACAACATAAATGTTGATCTTAAT
131 CTAACAAATTTTCCTATGCTTATTTGATACAATTCTCATGTGACAACATAAATGTTGATCTTAAT
*
1961184 ACTTCTAATTAACCACTCAAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAAACTC
196 ACTTCTAATTAACCACTCAAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAAGCTC
* *
1961249 CCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTATAA-TTTTCCAAAATAATCCAATTTC
261 CCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAATTTC
* * * *
1961313 ACATGCGAAATTCAATTTCAACGCTCAAAGAATAATATTCAGCATGGTACATAAACTACTGAACA
326 ACATGCGAAATTCAATTTCAACGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTGAACA
* * *
1961378 ATTACACAATAATCCATAACTTTTCCAAATTGCAAATTTAGTCCTTTAATTTTTCAAAAATTATA
391 ATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAATTATA
*
1961443 AAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTATAACATCATTTCAAGCCCCTACATA
456 AAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTACATA
* *
1961508 ATTTTTCTCATCCTCTATAGTTAAGGTTGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCATGAT
521 ATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCATGAT
* *
1961573 TTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTATTCAACGTTATAAAATCTCTAT
586 TTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCTCTAT
1961638 AATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGCTGAAA
651 AATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGCTGAAA
*
1961703 CTTCATATGTTCATATGATCAGGTACAAATGCTTTTAATCATCAATCATGCTTGGAAATGATTCT
716 CTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGGAAATGATTCT
* *
1961768 ACAACCTCAATAACATCAAAATCCTTCATCTAATCCATAAACCCTAAGGTGAACT
781 ACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCTTAAGGTGAACT
* * *
1961823 TAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGTGGTATTACAATA
1 TAAACCCACTTAACTTTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGGTATTACAAAA
1961888 -ATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAAATTC
66 CATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAAATTC
* *
1961952 CTAACAAATATTCCTATGCTTATTTGATACAATTCTCATATGACAACATAAATGTTGATCTTAAT
131 CTAACAAATTTTCCTATGCTTATTTGATACAATTCTCATGTGACAACATAAATGTTGATCTTAAT
*
1962017 ACTTCTAATTAACCACTCAAGTTCCTTTTTATCCGAACTTAACATAACATTTTTCACTTAAGCTC
196 ACTTCTAATTAACCACTCAAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAAGCTC
*
1962082 CCATCATTTCCATATTTGTGATTGAAACATCAACTTTTACAAGGTTTCCAAAATAATCCAATTTC
261 CCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAATTTC
* * * *
1962147 TCATGCGAAATTCAATTTTAACGCTCAAACATTAATTTTTAGCATGGTAGATAAACT-TTGAACA
326 ACATGCGAAATTCAATTTCAACGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTGAACA
*
1962211 ATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTAGTCCTTTAATTTTTCAAAAATTATA
391 ATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAATTATA
1962276 AAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTACATA
456 AAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTACATA
*
1962341 ATTTTTCTCATCCTCTATAGTCAAGGTTGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCATGAT
521 ATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCATGAT
*
1962406 TTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTATTCAACCTTATAAAATCTCTAT
586 TTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCTCTAT
* *
1962471 ATTCAAAACCTTAACTTAATTTCATCAAACCAAATATTTTTCCCAAGATTAGGGTTAGGCTGAAA
651 AATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGCTGAAA
* *
1962536 CTTTATATGTTCATATGATC-TGGTACAAATGCTTTTAATCATTAATCATGCTTGGAAATGATTC
716 CTTCATATGTTCATATGATCAT-GTACAAATGCTTTTAATCATCAATCATGCTTGGAAATGATTC
* *
1962600 TACAACCTCAATAACATCAAAATCCTTCATCTAATCCATAAACCCTAAGGTGAACT
780 TACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCTTAAGGTGAACT
*
1962656 TAAACCCACTTAACTTTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGTTATTACAAAA
1 TAAACCCACTTAACTTTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGGTATTACAAAA
* * * * *
1962721 CATAAAGAAAATCAAACCAAACGTTAGAATCTTTCTAATATACGCATACTTTGGAAAATAAATTC
66 CATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAAATTC
* * * * *
1962786 GTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGAAAAGATAAATGTTGATCTTAAT
131 CTAACAAATTTTCCTATGCTTATTTGATACAATTCTCATGTGACAACATAAATGTTGATCTTAAT
* * * *
1962851 ACTTCTAATTGACCACTCCAGTTCCTTTTTATCTCAACTTAACATAATATTTTTCACTTAAGCTC
196 ACTTCTAATTAACCACTCAAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAAGCTC
*
1962916 CCATCATTTCCATATTTGTGATTGAAACATCAACTTTTACAAGGTTTCCAAAATAATCCAATTTC
261 CCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAATTTC
* * * *
1962981 TCATGCGAAATTCAATTTTAATGCTCAAACATTAATTTTTAGCATGGTACATAAACTATTGAACA
326 ACATGCGAAATTCAATTTCAACGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTGAACA
* * *
1963046 ATTACAAAACAATCCATAACTTTTCCAAATTGCTAATTTAGTCCTTTAATTTTTTAAAAATTATA
391 ATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAATTATA
*
1963111 AAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTATAACATCATTTCAAGCCCCTACATA
456 AAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTACATA
* *
1963176 ATTTTTCTCATCCTCTATAGTTAAGGTTGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCATGAT
521 ATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCATGAT
*
1963241 TTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCCCTCTTCAACCTTATAAAATCTCTAT
586 TTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCTCTAT
* * * *
1963306 ATTGAAAACCTTAACTTAATTTCATTAAAACAAATATTTTTCCCAAGATTAAGGTTAGGCTGAAA
651 AATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGCTGAAA
*
1963371 CTTCATATGTTCATATGATCATGTACAAATGTTTTTAATCATCAATCATGCTTGGAAATGATTCT
716 CTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGGAAATGATTCT
* *
1963436 ACAAACTCAATAACATCAAAATCCTTCATCAAATCCATAAACCTTAAGGTGAACA
781 ACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCTTAAGGTGAACT
* *
1963491 TAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGTTATTACAAAA
1 TAAACCCACTTAACTTTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGGTATTACAAAA
* * *
1963556 CATAAAGAAATTC-AACCTAATGTTAGAATCTTACTAATATACGCATACTTTGGAAAATAAATTC
66 CATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAAATTC
* * * *
1963620 CTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTTATCTTAAT
131 CTAACAAATTTTCCTATGCTTATTTGATACAATTCTCATGTGACAACATAAATGTTGATCTTAAT
* * *
1963685 ACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAATATTTTTCACTTAAGCTC
196 ACTTCTAATTAACCACTCAAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAAGCTC
* * * *
1963750 CCATCATTTCCATATTTGTGAATGAAACCTCAACTTTTAGAAGGTTTTCATAATAATCCAATTTC
261 CCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAATTTC
* *
1963815 ACATGCGAACTTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTGAACA
326 ACATGCGAAATTCAATTTCAACGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTGAACA
**
1963880 ATTACACAACAATCCATAACTTTTCCATTTTGCTAATTTGGTCCTTTAATTTTTCAAAAATTATA
391 ATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAATTATA
*
1963945 GAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTACATA
456 AAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTACATA
* * *
1964010 ATTTTTCTCATCCTCTATTGTCAAGGTCGAATGCTTTGTGTGTTCAAGATAAGGGTTTTCATGAT
521 ATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCATGAT
*
1964075 TTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCCCTCTTCAACCTTATAAAATCTCTAT
586 TTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCTCTAT
* * *
1964140 ATTGAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAAGGTTAGGCTGAAA
651 AATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGCTGAAA
*
1964205 CTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCAAGCTTGGAAATGATTCT
716 CTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGGAAATGATTCT
* * *
1964270 ACAAACTCAATAACATCAAAATCCTTCATCAAATCTAT-AACCTTAAGGTGAACA
781 ACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCTTAAGGTGAACT
* *
1964324 TAAACACACTTAACTTTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGTTATTACAAAA
1 TAAACCCACTTAACTTTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGGTATTACAAAA
* *
1964389 CATAAAGAAATTCAAACCAAATGTTAGAATCTTACTAATATACGCATACTTTGGAAAATAAATTC
66 CATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAAATTC
* * * * *
1964454 CTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGAAAAATGTTTATCTTAAT
131 CTAACAAATTTTCCTATGCTTATTTGATACAATTCTCATGTGACAACATAAATGTTGATCTTAAT
* * *
1964519 ACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAATATTTTTCACTTAAGCTC
196 ACTTCTAATTAACCACTCAAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAAGCTC
* * *
1964584 CCAGCATTTCCATATTTGTGAATGAAACCTCAACTTTTACAAGGTTTTCAAAATAATCCAATTTC
261 CCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAATTTC
*
1964649 ACATGC-AAACTTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTGAAC
326 ACATGCGAAA-TTCAATTTCAACGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTGAAC
** *
1964713 AATTACACAACAATCCATAACTTTTCCATTTTACTAATTTGGTCCTTTAATTTTTCAAAAATTAT
390 AATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAATTAT
* * *
1964778 AGAATAGTCCCTAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCATACAT
455 AAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTACAT
* * *
1964843 AATTTTTCTCATCCTCTATTGTCAAGGTCGAATGCTTTGTGTGTTCAAGATAAGGGTTTTCATGA
520 AATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCATGA
*
1964908 TTTTACTCGATTTTGATTTGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCTCTA
585 TTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCTCTA
* * *
1964973 TAATCAAAA-CTCTAACTTAATTTCATCAAAA-AACATATTTCTCGCTAGATTAGGGTTAGGCTG
650 TAATCAAAACCT-TAACTTAATTTCATCAAAACAA-ATATTTTTCCCAAGATTAGGGTTAGGCTG
* *
1965036 AAACTTCATATGTTCATATTATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAATGAT
713 AAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGGAAATGAT
* * *
1965101 TCTACAACCTCGATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTGAACA
778 TCTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCTTAAGGTGAACT
* * *
1965159 TAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACC-AAATTTTAGGCTATTACAAAA
1 TAAACCCACTTAACTTTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGGTATTACAAAA
*
1965223 CATATAGAAATTCAAACCAAATGTTATAA-CTTACTAACATACGCATACTTTGGAAAATAAATTC
66 CATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAAATTC
* * * * *
1965287 CTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGAAAAATGTTTATCTTAAT
131 CTAACAAATTTTCCTATGCTTATTTGATACAATTCTCATGTGACAACATAAATGTTGATCTTAAT
* * *
1965352 ACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAATATTTTTCACTTAAGCTC
196 ACTTCTAATTAACCACTCAAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAAGCTC
* * *
1965417 CCAGCATTTCCATATTTGTGAATGAAACCTCAACTTTTACAAGGTTTTCAAAATAATCCAATTTC
261 CCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAATTTC
*
1965482 ACATGC-AAACTTCAATTTCAATGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTGAAC
326 ACATGCGAAA-TTCAATTTCAACGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTGAAC
** *
1965546 AATTACACAACAATCCATAACTTTTCCATTTTACTAATTTGGTCCTTTAATTTTTCAAAAATTAT
390 AATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAATTAT
* * *
1965611 AGAATAGTCCCTAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCATACAT
455 AAAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTACAT
* * *
1965676 AATTTTTCTCATCCTCTATTGTCAAGGTCGAATGCTTTGTGTGTTCAAGATAAGGGTTTTCATGA
520 AATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCATGA
1965741 TTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCTCTA
585 TTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCTCTA
* * * * *
1965806 TAATCAAAA-CTCTAACTTAATTTCATTAAAACACATATTTCTCGCTAGATTAGGGTTAGGCTGA
650 TAATCAAAACCT-TAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGCTGA
*
1965870 AACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAATGATT
714 AACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGGAAATGATT
* * *
1965935 CTACAACCTCGATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTGAACA
779 CTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCTTAAGGTGAACT
* * *
1965992 TAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACC-AAATTTTAGGCTATTACAAAA
1 TAAACCCACTTAACTTTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGGTATTACAAAA
*
1966056 CATATAGAAATTCAAACCAAATGTTATAA-CTTACTAACATACGCATACTTTGGAAAATAAATTC
66 CATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAAATTC
* *
1966120 CTAACAAATATTCCTATGCTTATTTGATACAATTCTCATGTGACAACATAATTGTTGATCTTAAT
131 CTAACAAATTTTCCTATGCTTATTTGATACAATTCTCATGTGACAACATAAATGTTGATCTTAAT
*
1966185 ACTTCTAATTGACCACTCAAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAAGCTC
196 ACTTCTAATTAACCACTCAAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAAGCTC
* * *
1966250 CCATCCTTTCCATATTTGTGATTGAATCCTCAACTTTTACAAGGTTTCCAAAATAATACAATTTC
261 CCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAATTTC
* * * * * *
1966315 AAATGCGAACTTCAATTTCAACACTCAAACATTAATTTTCAGCATGGTACGTAGACTATTGAAGA
326 ACATGCGAAATTCAATTTCAACGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTGAACA
* * * *
1966380 ATTACACAATAATCTAAAACTTTTTCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAATTATA
391 ATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAATTATA
* * *
1966445 GAATAGTCCCCAAATTTTTCTTAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTGCATA
456 AAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTACATA
* * *
1966510 GTTTTTCTCATCCTCCATAGTCAAGGTCGAATCCTTTGTGTGTCCAAGACAAGGGTTTTCATGAT
521 ATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCATGAT
* * * *
1966575 TTTATTCGATTTTGATTC-ATTTTAAGCATGAAATCAACCTCTATTCAACCTTATAAAATCTATA
586 TTTACTCGATTTTGATTCGA-TTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCTCTA
* *
1966639 TAATCAAAACCTTATCTTAATTTCATCAAAACACATATTTTTCCCAAGATTAGGGTTAGGCTGAA
650 TAATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGCTGAA
* * * * *
1966704 ACTTTATATGTTCATATAATCATGTACAAATGCTTTTATTAATCAATCATGCTTGAAAATGATTC
715 ACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGGAAATGATTC
1966769 TACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCTTAAGGTGAACT
780 TACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCTTAAGGTGAACT
*
1966825 TAAACCCACTTAACTTTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGTTATTACAAAA
1 TAAACCCACTTAACTTTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGGTATTACAAAA
* * * *
1966890 CATAAAGAAATTCAAACCAAATGTTAGAATCTTAATAATATACGCATACTTTGGAAAATTAATTC
66 CATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAAATTC
* * * * *
1966955 CTAACAAATTTTCCTATGCTTATTTGATATAATTTTCATGTGACAAGATAAATGTTGATGTAAAT
131 CTAACAAATTTTCCTATGCTTATTTGATACAATTCTCATGTGACAACATAAATGTTGATCTTAAT
* *
1967020 ACTTCTAATTGACCACTCCAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAAGCTC
196 ACTTCTAATTAACCACTCAAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAAGCTC
* * *
1967085 CCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTTCAAAGTAATACAATTTC
261 CCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAATTTC
* * *
1967150 ACATGCGAACTTCAATTTCAATGCTCAAACATTAACTTTCAGCATGGTACATAAACTATTGAACA
326 ACATGCGAAATTCAATTTCAACGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTGAACA
* **
1967215 ATTACACAACAATCTATAACTTTTCCATTTTGCTAATTTGGTCCTTTAATTTTTCAAAAATTA-A
391 ATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAATTATA
*
1967279 AGAATAGTCCCAAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTACAT
456 A-AATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTACAT
* * * *
1967344 AATTTTTCTCATCCTCTGTTGTCAAGGTCGAATGCTTTGTGTGTTCAAGATAAGGGTTTTCATGA
520 AATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCATGA
* *
1967409 TTTTACTCGATTTTTATTCGATTTAAGCATGAAATCGACCTCTCTTCAGCCTTATAAAATCTCTA
585 TTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCTCTA
* * *
1967474 TAATCAAAA-CTCTAACTTAATTTCATCAAAACACATATTTCTCCCTAGATTAGGGTTAGGCTGA
650 TAATCAAAACCT-TAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGCTGA
* * *
1967538 AATTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGAAAATAATT
714 AACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGGAAATGATT
* * *
1967603 CTACAACCTCGATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTGAACA
779 CTACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCTTAAGGTGAACT
* * *
1967660 TAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTAGGCTATTACAAAA
1 TAAACCCACTTAACTTTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGGTATTACAAAA
* *
1967725 CATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATAAGCATACATTGGAAAATAAATTC
66 CATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAAATTC
* *
1967790 CTAACAAAATTTCCTATGCTTATTTGATACAATTGTCATGTGACAACATAAATGTTGATCTTAAT
131 CTAACAAATTTTCCTATGCTTATTTGATACAATTCTCATGTGACAACATAAATGTTGATCTTAAT
*
1967855 ACTTCTAATTAACCACTCAAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCATTTAAGCTC
196 ACTTCTAATTAACCACTCAAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAAGCTC
* * * *
1967920 TCATTATTTTCATATTTGTAATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAATTTC
261 CCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAATTTC
1967985 ACATGCGAAATTCAA
326 ACATGCGAAATTCAA
1968000 AGATTATAAA
Statistics
Matches: 5874, Mismatches: 283, Indels: 38
0.95 0.05 0.01
Matches are distributed among these distances:
832 28 0.00
833 2406 0.41
834 1882 0.32
835 1556 0.26
836 2 0.00
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.36
Consensus pattern (835 bp):
TAAACCCACTTAACTTTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGGTATTACAAAA
CATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATACGCATACTTTGGAAAATAAATTC
CTAACAAATTTTCCTATGCTTATTTGATACAATTCTCATGTGACAACATAAATGTTGATCTTAAT
ACTTCTAATTAACCACTCAAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAAGCTC
CCATCATTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAATTTC
ACATGCGAAATTCAATTTCAACGCTCAAACATTAATTTTCAGCATGGTACATAAACTATTGAACA
ATTACACAACAATCCATAACTTTTCCAAATTGCTAATTTGGTCCTTTAATTTTTCAAAAATTATA
AAATAGTCCCCAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTCAAGCCCCTACATA
ATTTTTCTCATCCTCTATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAAGGGTTTTCATGAT
TTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTTATAAAATCTCTAT
AATCAAAACCTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATTAGGGTTAGGCTGAAA
CTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCTTGGAAATGATTCT
ACAACCTCAATAACATCAAAATCCTTCATCAAATCCATAAACCTTAAGGTGAACT
Found at i:1968677 original size:727 final size:728
Alignment explanation
Indices: 1967267--1968726 Score: 2505
Period size: 727 Copynumber: 2.0 Consensus size: 728
1967257 CCTTTAATTT
* *
1967267 TTCAAAAATTAAAGAATAGTCCCAAAATTTTTCTAAGGCTTGTAGAATACTTACAACATCATTTC
1 TTCAAAAATTAAAGAATAGTCCCAAAATTTTTCAAAGGCTTATAGAATACTTACAACATCATTTC
** * * *
1967332 AAGCCCCTACATAATTTTTCTCATCCTCTGTTGTCAAGGTCGAATGCTTTGTGTGTTCAAGATAA
66 AAGCCCCTACATAATTTTTCTCATCCTCCATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAA
* *
1967397 GGGTTTTCATGATTTTACTCGATTTTTATTCGATTTAAGCATGAAATCGACCTCTCTTCAGCCTT
131 GGGTTTTCATGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTT
* *
1967462 ATAAAATCTCTATAATCAAAACTCTAACTTAATTTCATCAAAACACATATTTCTCCCTAGATTAG
196 ATAAAATCTCTATAATCAAAACTCTAACTTAATTTCATCAAAACAAATATTTCTCCCAAGATTAG
*
1967527 GGTTAGGCTGAAATTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCT
261 GGTTAGGCTGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCT
* *
1967592 TGAAAATAATTCTACAACCTCGATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTGA
326 TGAAAATAATTCTACAAACTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTGA
1967657 ACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTAGGCTATTACA
391 ACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTAGGCTATTACA
*
1967722 AAACATATAGAAATTCAAACCAAATGTTAGAATCTTACTAACATAAGCATACATTGGAAAATAAA
456 AAACATATAGAAATTCAAACCAAATGTTAGAATATTACTAACATAAGCATACATTGGAAAATAAA
*
1967787 TTCCTAACAAAATTTCCTATGCTTATTTGATACAATTGTCATGTGACAACATAAATGTTGATCTT
521 TTCCTAACAAAATTTCCTATGCTTATTTGATACAATTCTCATGTGACAACATAAATGTTGATCTT
*
1967852 AATACTTCTAATTAACCACTCAAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCATTTAAG
586 AATACTTCTAATTAACCACTCAAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAAG
* * * *
1967917 CTCTCATTATTTTCATATTTGTAATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATCCAAT
651 CTCCCATCATTTCCATATTTGTAATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATACAAT
*
1967982 TTCACATGCGAAA
716 TTCAAATGCGAAA
* *
1967995 TTCAAAGATTATAA-AATAGTCCCAAAATTTTTCAAAGGCTTATAGAATACTTATAACATCATTT
1 TTCAAAAATTA-AAGAATAGTCCCAAAATTTTTCAAAGGCTTATAGAATACTTACAACATCATTT
*
1968059 CAAGCCCCTACGTAATTTTTCTCATCCTCCATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACA
65 CAAGCCCCTACATAATTTTTCTCATCCTCCATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACA
1968124 AGGGTTTTCAT-ATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCT
130 AGGGTTTTCATGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCT
*
1968188 TATAAAATCTCTATAATCAAAAC-CTTAACTTAATTTCATCAAAACAAATATTTTTCCCAAGATT
195 TATAAAATCTCTATAATCAAAACTC-TAACTTAATTTCATCAAAACAAATATTTCTCCCAAGATT
1968252 AGGGTTAGGCTGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATG
259 AGGGTTAGGCTGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATG
* * *
1968317 CTTGGAAATGATTCTACAAACTCAATAACATCAAAATCCTTCATCAAATCCATAAACCTTAAGGT
324 CTTGAAAATAATTCTACAAACTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGT
* * * *
1968382 GAACTTAAACCCACTTAACTTTCAAAATTTACATTTTGGTTATTGACCAAAATTTTGGGGTATTA
389 GAACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTAGGCTATTA
* *
1968447 CAAAACATATAGAAATTCAAACCAAATGTTAGAATATTACTAACATACGCATACTTTGGAAAATA
454 CAAAACATATAGAAATTCAAACCAAATGTTAGAATATTACTAACATAAGCATACATTGGAAAATA
*
1968512 AATTCCTAAC-AAATATTCCTATGCTTATTTGATACAATTCTCATGTGACAACATAATTGTTGAT
519 AATTCCTAACAAAAT-TTCCTATGCTTATTTGATACAATTCTCATGTGACAACATAAATGTTGAT
*
1968576 CTTAATACTTCTAATTGACCACTCAAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTT
583 CTTAATACTTCTAATTAACCACTCAAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTT
* *
1968641 AAGCTCCCATCCTTTCCATATTTGTGATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATAC
648 AAGCTCCCATCATTTCCATATTTGTAATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATAC
*
1968706 AATTTCAAATGCGAAC
713 AATTTCAAATGCGAAA
1968722 TTCAA
1 TTCAA
1968727 TTTCAACACT
Statistics
Matches: 689, Mismatches: 40, Indels: 7
0.94 0.05 0.01
Matches are distributed among these distances:
726 5 0.01
727 555 0.81
728 127 0.18
729 2 0.00
ACGTcount: A:0.36, C:0.20, G:0.10, T:0.35
Consensus pattern (728 bp):
TTCAAAAATTAAAGAATAGTCCCAAAATTTTTCAAAGGCTTATAGAATACTTACAACATCATTTC
AAGCCCCTACATAATTTTTCTCATCCTCCATAGTCAAGGTCGAATGCTTTGTGTGTCCAAGACAA
GGGTTTTCATGATTTTACTCGATTTTGATTCGATTTAAGCATGAAATCGACCTCTCTTCAACCTT
ATAAAATCTCTATAATCAAAACTCTAACTTAATTTCATCAAAACAAATATTTCTCCCAAGATTAG
GGTTAGGCTGAAACTTCATATGTTCATATGATCATGTACAAATGCTTTTAATCATCAATCATGCT
TGAAAATAATTCTACAAACTCAATAACATCAAAATCCTTCATCAAATCCATAAACCCTAAGGTGA
ACATAAACCCACTTAACATTCAAAATTTACATTTTGGTTATTGACCAAAATTTTAGGCTATTACA
AAACATATAGAAATTCAAACCAAATGTTAGAATATTACTAACATAAGCATACATTGGAAAATAAA
TTCCTAACAAAATTTCCTATGCTTATTTGATACAATTCTCATGTGACAACATAAATGTTGATCTT
AATACTTCTAATTAACCACTCAAGTTCCTTTTTATCCCAACTTAACATAACATTTTTCACTTAAG
CTCCCATCATTTCCATATTTGTAATTGAAACCTCAACTTTTACAAGGTTTCCAAAATAATACAAT
TTCAAATGCGAAA
Done.