genome.fa.s6608.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006608.1 Hibiscus syriacus cultivar Beakdansim tig00016216_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74701

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7658--7697	21	2.0	19	90	9	62	60	0	0	40	0.97
11537--11585	23	2.1	24	84	3	64	16	14	20	48	1.80
14158--14204	21	2.2	21	88	7	69	70	2	25	2	1.10
14687--14729	20	2.1	21	82	4	52	58	0	2	39	1.11
22050--22383	89	3.7	90	85	6	419	41	11	20	25	1.86
22050--22383	177	1.9	179	85	4	467	41	11	20	25	1.86
22050--22383	46	7.4	46	84	5	421	41	11	20	25	1.86
23375--23407	17	1.9	17	88	11	50	54	0	18	27	1.44
25027--25101	27	2.8	26	80	8	87	46	21	13	18	1.83
25094--25144	26	2.0	26	88	0	75	37	21	17	23	1.94
26139--26217	32	2.5	31	81	4	86	16	25	26	31	1.96
27759--27918	80	2.0	80	97	1	304	35	6	15	42	1.72
30739--30784	24	1.9	24	95	0	83	32	0	0	67	0.91
35479--35519	2	20.0	2	95	5	73	48	0	2	48	1.14
36156--36207	20	2.6	20	74	17	54	51	5	3	38	1.44
37688--37746	31	1.9	31	82	0	73	22	6	8	62	1.47
40864--40920	25	2.3	25	96	0	105	12	31	31	24	1.92
41013--41303	2	158.0	2	67	26	157	51	4	1	42	1.30
41004--41211	23	8.9	23	70	24	102	54	3	0	40	1.25
41013--41303	50	6.0	50	73	18	205	51	4	1	42	1.30
41001--41303	7	43.3	7	73	21	196	52	4	1	41	1.29
41013--41284	66	4.2	65	77	18	207	51	4	1	42	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41004--41303	82	3.7	80	75	17	278	52	4	1	42	1.29
44083--44243	9	16.8	9	72	22	100	57	3	0	38	1.21
44083--44243	15	10.1	15	74	20	100	57	3	0	38	1.21
44084--44325	26	9.3	26	72	21	147	54	4	0	40	1.25
44115--44332	2	116.5	2	66	29	101	52	5	0	41	1.29
44088--44342	45	5.8	45	77	15	225	54	4	0	40	1.25
44118--44343	43	5.6	38	74	21	146	53	4	0	41	1.28
44092--44343	102	2.6	92	73	22	145	54	4	0	40	1.26
46241--46386	77	1.9	79	84	2	197	36	10	16	36	1.83
46125--46745	265	2.3	264	82	0	731	38	10	17	33	1.85
46792--47018	77	2.9	76	76	13	210	36	6	15	41	1.73
51085--51356	99	2.7	99	81	3	316	37	18	10	33	1.85
55062--55127	16	4.1	16	73	11	55	25	21	18	34	1.96
55073--55132	16	3.8	16	80	4	59	25	21	18	35	1.96
55162--55194	16	2.1	16	100	0	66	24	18	12	45	1.83
55811--55879	24	2.9	23	95	4	120	42	1	5	50	1.35
55822--55905	43	2.0	43	83	6	109	41	3	5	48	1.45
55848--55898	20	2.6	19	84	6	66	41	5	5	47	1.52
55820--55879	2	28.0	2	80	12	66	43	1	5	50	1.34
56248--56284	7	5.3	7	86	0	56	16	0	35	48	1.46
56354--56406	20	2.5	20	72	6	52	39	7	5	47	1.56
56399--56457	23	2.4	25	81	15	79	57	0	1	40	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56735--56774	21	1.9	21	85	10	55	17	0	27	55	1.43
56864--56923	2	29.0	2	83	6	75	48	3	3	45	1.35
57078--57107	13	2.3	13	94	0	51	53	0	0	46	1.00
57312--57349	20	1.9	20	94	0	67	28	18	15	36	1.92
57562--57586	2	12.5	2	100	0	50	48	0	0	52	1.00
57603--57634	12	2.6	12	95	5	55	43	3	6	46	1.44
58870--58901	15	2.1	15	100	0	64	25	37	0	37	1.56
61182--61239	19	3.1	19	75	12	57	17	27	31	24	1.97
73487--73523	19	1.9	19	94	0	65	24	32	21	21	1.98
74617--74656	21	1.9	21	85	10	55	35	10	2	52	1.48

Tables:   1

The End!