genome.fa.s6609.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006609.1 Hibiscus syriacus cultivar Beakdansim tig00016221_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86130

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9520--9551	9	3.6	9	100	0	64	0	21	0	78	0.76
10535--10630	40	2.4	40	89	0	147	56	15	3	25	1.54
15052--15092	8	5.0	8	82	5	55	43	0	2	53	1.13
17817--17861	19	2.3	20	92	3	74	40	0	4	55	1.20
18040--18069	16	1.9	16	93	6	53	16	16	0	66	1.25
18213--18247	11	3.1	11	84	8	52	34	2	0	62	1.10
20674--20719	18	2.6	17	79	3	56	26	21	23	28	1.99
21370--21854	227	2.1	228	95	2	868	44	8	7	40	1.62
22132--22178	20	2.4	19	89	10	76	55	10	17	17	1.69
21921--22389	181	2.6	181	88	2	658	42	14	16	26	1.87
22322--22362	19	2.3	18	88	12	59	48	12	17	21	1.79
24584--24648	21	3.1	21	79	0	76	38	13	30	16	1.88
24681--24746	33	2.0	33	90	0	105	28	0	48	22	1.51
29375--29611	40	5.5	40	71	18	133	20	19	35	24	1.96
29269--29629	134	2.7	134	90	3	557	22	18	32	25	1.97
29637--29733	28	3.4	28	82	15	101	44	12	16	26	1.83
30745--30877	29	4.7	29	91	5	211	46	13	8	31	1.73
30745--30882	57	2.4	56	88	9	208	47	13	9	30	1.74
31124--31227	36	3.0	36	83	4	133	36	11	19	32	1.87
31125--31243	36	3.4	36	80	6	120	36	12	20	30	1.90
31195--31427	105	2.3	101	85	8	292	37	12	19	30	1.89
31888--31920	14	2.4	14	94	0	57	18	0	30	51	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33090--33139	11	4.5	11	73	16	50	0	6	14	80	0.90
33099--33145	17	2.7	18	84	15	64	0	6	12	80	0.88
33087--33151	21	3.2	20	80	10	62	1	9	10	78	1.03
33091--33166	17	4.5	17	74	11	57	1	9	10	78	1.01
33779--33872	46	2.1	45	85	2	125	38	8	25	27	1.85
35061--35122	32	2.0	32	96	3	117	61	9	14	14	1.57
38917--38962	3	15.3	3	86	8	67	63	0	2	34	1.07
39399--39447	19	2.6	19	90	0	71	28	4	10	57	1.50
39566--40738	199	5.9	199	97	0	2134	36	15	16	31	1.90
39566--40738	399	2.9	399	96	0	2145	36	15	16	31	1.90
42206--42267	18	3.4	18	79	0	79	37	9	35	17	1.83
42206--42297	6	15.3	6	79	0	67	36	7	34	20	1.81
42221--42301	3	27.0	3	75	0	72	35	6	34	23	1.80
42209--42285	36	2.1	36	90	0	118	35	9	35	20	1.85
42209--42297	12	7.4	12	84	0	88	35	7	34	21	1.82
42206--42297	18	5.1	18	77	0	76	36	7	34	20	1.81
43757--44249	183	2.7	182	95	1	887	34	14	17	33	1.90
46714--46778	25	2.6	25	80	0	85	35	9	13	41	1.77
47118--47190	23	3.2	23	80	0	83	35	5	20	38	1.76
47619--47655	18	2.1	18	89	0	56	32	5	10	51	1.60
47611--47657	24	2.0	24	86	0	67	34	4	14	46	1.64
47914--48000	39	2.2	39	91	0	147	48	19	13	18	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48418--48490	23	3.2	23	86	0	92	35	4	21	38	1.73
48905--48966	23	2.7	23	97	0	115	35	20	9	33	1.86
57793--57870	23	3.7	20	76	20	70	24	0	3	71	1.02
57790--57998	21	10.4	19	69	22	85	25	2	2	68	1.15
57823--57921	52	1.9	50	83	8	126	29	3	1	66	1.13
57787--57870	3	27.7	3	75	21	61	25	0	3	71	1.02
57880--57930	12	4.2	12	75	12	50	31	1	0	66	1.03
57790--57958	87	1.9	88	80	12	197	26	2	2	68	1.16
58174--58301	20	6.3	20	85	3	150	46	16	17	19	1.85
58652--58720	21	3.4	20	86	9	95	18	20	20	40	1.92
58652--58867	20	10.6	20	73	12	95	22	15	24	37	1.92
59181--59224	20	2.1	21	83	8	54	18	4	2	75	1.09
59218--59420	9	20.9	9	72	20	74	18	7	2	71	1.21
59346--59420	5	15.6	5	77	18	72	18	4	0	77	0.92
59327--59420	14	6.8	14	75	16	63	20	4	1	74	1.05
59346--59424	30	2.7	30	79	18	87	18	3	0	77	0.92
62519--62580	26	2.3	28	81	8	76	74	6	17	1	1.11
63634--63709	32	2.4	32	82	8	100	26	15	26	31	1.96
63900--64066	64	2.6	64	96	0	298	37	21	12	28	1.90
64378--64610	84	2.8	84	78	10	244	33	21	19	25	1.97
66290--66346	28	2.0	28	83	12	73	24	0	5	70	1.08
66291--66338	16	2.9	17	84	6	55	22	0	6	70	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66352--66400	12	3.9	13	79	12	50	32	2	0	65	1.04
66360--66405	21	2.1	21	84	11	58	30	2	0	67	1.03
67256--67404	4	35.8	4	68	23	53	20	6	1	72	1.13
67256--67329	20	3.5	22	74	10	82	18	4	2	74	1.10
67256--67402	9	16.0	9	67	21	74	19	6	1	72	1.13
67271--67404	23	6.0	23	71	20	81	20	5	0	72	1.10
68056--68109	20	2.7	20	75	11	65	29	27	14	27	1.95
68910--68943	12	2.8	12	90	0	50	55	29	0	14	1.40
69069--69122	24	2.2	24	90	0	81	22	16	20	40	1.91
71380--71415	18	2.0	18	88	0	54	58	19	2	19	1.52
71709--71802	20	4.7	20	91	0	143	21	19	21	38	1.94
71918--71969	25	2.1	25	96	0	95	28	7	21	42	1.80
72346--72410	24	2.7	24	90	0	85	29	3	15	52	1.58
72354--72392	18	2.2	18	85	0	51	33	2	10	53	1.48
72725--72811	39	2.2	39	95	0	156	47	19	14	18	1.83
73082--73119	20	1.9	20	100	0	76	13	18	26	42	1.87
73169--73307	61	2.2	63	84	6	176	49	15	2	32	1.57
74069--74164	21	4.6	21	75	8	88	22	16	34	26	1.95
74069--74164	42	2.3	42	78	7	104	22	16	34	26	1.95
74308--74353	4	11.5	4	80	0	56	67	2	2	28	1.14
75333--75367	12	3.0	12	91	4	54	20	0	8	71	1.11
77818--77862	20	2.2	20	96	0	81	68	20	11	0	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80703--80732	3	10.0	3	92	0	51	33	3	0	63	1.11
82508--82548	15	2.6	16	84	7	57	12	7	4	75	1.16
84571--84992	55	7.7	55	87	3	582	35	10	18	35	1.86

Tables:   1

The End!