genome.fa.s661.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000661.1 Hibiscus syriacus cultivar Beakdansim tig00001290_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78558

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73--894	227	3.7	226	78	4	788	23	21	22	32	1.98
15128--15183	21	2.7	21	81	10	78	25	37	28	8	1.86
23341--23479	69	2.0	69	97	0	260	25	35	9	30	1.87
25893--26168	138	2.0	138	95	0	498	25	17	14	42	1.87
36146--36186	18	2.3	18	100	0	82	9	21	51	17	1.74
36140--36169	13	2.3	13	100	0	60	13	23	46	16	1.82
36164--36196	13	2.5	13	95	0	57	15	21	48	15	1.81
36139--36207	31	2.2	31	86	0	102	17	23	43	15	1.87
36199--36253	10	5.6	10	85	10	78	34	29	21	14	1.93
36199--36254	19	2.9	19	87	10	78	33	28	21	16	1.95
43351--43387	13	2.8	13	95	0	65	18	18	45	16	1.85
43400--43454	10	5.6	10	85	10	78	34	29	21	14	1.93
43400--43455	19	2.9	19	87	10	78	33	28	21	16	1.95
47380--47431	25	2.1	25	100	0	104	19	21	11	48	1.80
56660--56691	13	2.5	13	94	0	55	31	6	28	34	1.82
63493--63587	42	2.2	43	96	3	174	17	20	27	34	1.95
63489--63650	65	2.6	65	93	3	269	18	19	25	36	1.95
63572--63654	42	2.0	42	97	0	157	20	19	24	36	1.95
64379--64492	20	5.6	20	80	11	126	23	21	18	36	1.95
64374--64451	41	1.9	41	97	0	147	24	21	19	34	1.96
64342--64427	21	4.1	21	66	19	63	24	23	22	30	1.99
64459--64533	21	3.6	20	89	7	105	21	21	25	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69318--69353	12	3.0	12	91	0	54	52	0	8	38	1.32
75574--75627	21	2.6	21	84	0	72	20	20	29	29	1.98
75642--75837	21	9.3	21	74	14	90	21	18	22	37	1.94
75600--75862	42	6.3	42	83	10	299	21	17	23	37	1.94
76714--76856	42	3.4	41	97	0	232	34	23	19	23	1.97
76693--76900	63	3.3	61	78	12	190	35	22	20	22	1.96
76689--76927	105	2.3	103	84	7	288	35	21	20	23	1.96
76693--76900	42	4.9	41	86	5	197	35	22	20	22	1.96
76686--76900	84	2.6	84	83	8	312	34	21	20	23	1.97
76840--76933	44	2.3	40	85	10	120	34	20	22	23	1.97
76756--76919	63	2.6	60	80	7	177	34	21	20	23	1.97
76686--76919	21	11.2	20	72	13	138	34	21	20	23	1.97
76923--76975	21	2.5	21	93	0	88	16	20	32	30	1.95
77320--77361	15	2.8	15	85	7	50	69	0	0	30	0.89

Tables:   1

The End!