Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006610.1 Hibiscus syriacus cultivar Beakdansim tig00016222_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53800

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9400--9470
3
25.0
3
77
16
53
60
1
0
38
1.06
9421--9480
22
2.7
22
84
2
75
68
3
0
28
1.05
16305--16415
38
2.8
39
91
6
163
29
17
9
44
1.79
16327--16415
38
2.4
38
98
1
171
30
17
6
44
1.75
16509--16560
11
4.5
11
79
13
52
50
1
0
48
1.12
16509--16558
16
2.8
18
72
27
61
50
2
0
48
1.12
16513--16574
26
2.2
28
83
8
83
50
3
1
45
1.27
16513--16583
26
2.6
27
78
10
74
53
2
1
42
1.24
17814--17852
17
2.5
16
88
12
55
74
2
5
17
1.12
18124--18176
27
2.0
27
85
3
72
43
5
1
49
1.37
21648--21690
17
2.5
17
84
0
59
34
16
6
41
1.75
24449--24510
17
3.6
17
82
4
70
40
9
14
35
1.79
24466--24509
18
2.5
18
85
10
56
43
11
9
36
1.72
25677--25729
25
2.1
26
83
16
67
22
33
0
43
1.54
28161--28225
17
3.8
17
77
4
67
43
10
13
32
1.79
29712--29736
8
3.1
8
100
0
50
36
12
0
52
1.39
34867--34921
27
2.0
27
89
0
83
47
14
10
27
1.78
35773--35822
19
2.6
19
70
0
55
22
12
14
52
1.74
36911--37219
42
7.5
41
76
8
238
35
15
19
29
1.93
36914--37237
123
2.6
123
80
4
332
36
15
19
29
1.92
36911--37241
82
4.0
83
74
10
254
35
16
18
29
1.93
41421--41501
3
26.0
3
81
9
74
39
3
0
56
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45890--45936
13
3.6
13
82
0
58
31
14
12
40
1.84
45916--46081
85
2.0
84
89
1
251
28
19
19
32
1.96
45941--46081
44
3.3
43
63
9
108
29
19
19
31
1.96
49731--49786
6
9.3
6
98
0
103
30
19
0
50
1.48

Tables:   1

The End!