Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006611.1 Hibiscus syriacus cultivar Beakdansim tig00016226_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100985

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17764--17801
16
2.4
16
100
0
76
36
21
42
0
1.53
20984--21233
132
1.9
131
88
4
378
34
9
16
39
1.80
22718--22759
19
2.2
19
86
4
57
7
7
4
80
1.00
33722--33746
13
1.9
13
100
0
50
80
0
0
20
0.72
37549--37942
131
3.0
130
89
1
601
32
9
15
41
1.81
38958--39007
23
2.2
23
85
0
64
32
26
20
22
1.98
39343--40088
368
2.0
367
98
0
1429
34
7
12
45
1.70
40427--40473
23
2.1
21
84
7
58
34
14
10
40
1.81
40794--40834
18
2.3
18
95
0
73
53
0
9
36
1.34
42402--42427
12
2.2
12
100
0
52
7
15
50
26
1.71
44285--44372
24
3.7
24
85
0
104
19
34
13
32
1.91
47681--47762
33
2.6
33
84
5
107
28
26
19
25
1.99
51908--52034
40
3.0
39
79
15
121
43
2
2
51
1.27
52059--52207
40
3.6
40
70
12
129
52
1
3
42
1.26
52095--52134
16
2.4
17
91
4
64
57
0
0
42
0.98
52083--52198
41
2.7
44
79
14
141
53
1
2
42
1.25
52507--52631
61
2.0
61
92
0
205
25
8
24
41
1.82
62952--62987
16
2.2
17
95
5
65
44
22
0
33
1.53
65648--65841
93
2.1
93
96
0
352
32
10
9
47
1.70
67918--67987
3
23.3
3
94
0
104
38
0
0
61
0.96
68029--68098
18
3.7
19
75
9
63
57
0
1
41
1.08
71838--71865
2
14.0
2
100
0
56
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72050--72087
14
2.7
14
91
0
67
18
13
10
57
1.63
72058--72107
24
2.1
23
92
3
82
14
14
12
60
1.60
72236--72289
27
2.0
26
85
3
72
9
11
18
61
1.55
72376--72406
16
1.9
16
100
0
62
6
12
22
58
1.58
73588--74333
134
5.5
134
83
2
859
30
22
16
29
1.96
74478--74512
3
11.7
3
100
0
70
34
0
0
65
0.93
78906--78941
18
2.1
17
89
5
54
61
0
0
38
0.96
80214--80274
8
7.4
8
76
20
63
75
3
0
21
0.94
80214--80326
25
4.6
25
78
18
96
72
2
2
22
1.10
80214--80349
24
5.5
24
79
12
93
73
2
4
19
1.13
80333--80358
10
2.6
10
100
0
52
92
0
7
0
0.39
80407--80436
14
2.2
14
94
5
53
86
0
0
13
0.57
81700--81986
80
3.6
78
75
10
256
25
20
22
30
1.98
82108--82201
37
2.6
36
84
6
109
35
13
19
31
1.91
83822--83873
27
1.9
27
84
7
70
5
9
1
82
0.90
83792--83880
37
2.4
37
78
12
101
4
14
3
77
1.06
83857--83894
14
2.6
15
83
4
51
0
18
5
76
0.97
86918--86969
27
2.0
27
88
3
79
67
0
7
25
1.17
86959--87024
7
8.6
8
79
17
54
78
3
1
16
0.95
87011--87068
24
2.5
22
83
10
73
72
0
5
22
1.04
86956--87092
14
10.8
13
70
17
76
75
1
3
19
1.03
87058--87114
6
9.2
6
74
14
53
75
0
5
19
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
86931--87126
14
15.4
12
67
23
59
73
1
4
21
1.06
87183--87221
8
5.2
8
82
17
57
87
0
0
12
0.55
87183--87211
13
2.2
13
100
0
58
86
0
0
13
0.58
92431--92486
24
2.3
24
100
0
112
28
17
16
37
1.91
92687--92752
30
2.2
30
83
5
80
12
27
24
36
1.91
93178--93218
21
2.0
21
95
0
73
36
0
12
51
1.40
94605--94647
3
14.3
3
100
0
86
32
0
0
67
0.91
94699--94736
4
10.2
4
83
16
55
23
0
0
76
0.79
94701--94759
10
5.8
10
76
21
52
22
5
0
72
1.03
94767--94823
30
1.9
30
82
7
71
15
3
3
77
1.05
94868--94930
5
12.8
5
79
12
51
17
4
3
74
1.12
94870--94943
29
2.6
30
80
6
73
17
4
4
74
1.13
94868--94930
20
3.2
20
78
15
60
17
4
3
74
1.12

Tables:   1

The End!