Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006612.1 Hibiscus syriacus cultivar Beakdansim tig00016227_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111335

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2600--2676
36
2.1
36
84
13
97
50
3
1
44
1.28
4603--4663
21
3.2
21
63
29
55
44
21
3
31
1.68
4555--4664
35
3.1
35
89
3
150
43
20
3
32
1.69
7873--7904
15
2.1
16
94
5
57
6
25
18
50
1.70
9094--9206
37
3.2
36
80
8
108
40
18
5
35
1.73
9094--9177
37
2.3
37
83
6
109
42
19
3
34
1.68
14478--14585
24
4.3
24
66
17
76
27
0
13
58
1.36
14497--14558
32
1.9
32
84
12
83
25
0
11
62
1.28
14487--14597
19
5.8
19
71
16
61
28
0
14
56
1.38
14744--14768
12
2.1
12
100
0
50
60
8
8
24
1.52
15133--15175
20
2.2
20
100
0
86
34
16
20
27
1.94
15276--15309
17
2.0
17
88
0
50
23
0
2
73
0.97
16831--16878
21
2.3
21
78
7
53
43
12
16
27
1.84
18322--18353
16
2.0
16
93
0
55
12
9
6
71
1.29
21024--21062
2
19.5
2
89
0
60
51
0
0
48
1.00
21824--21935
35
3.2
34
84
5
143
41
23
0
33
1.60
23550--23658
35
3.1
35
87
0
146
32
1
22
43
1.64
29619--29667
3
16.0
3
87
4
71
61
0
0
38
0.96
29910--30615
113
6.2
113
86
2
885
30
19
13
37
1.90
31439--31906
94
5.0
94
95
0
805
34
20
15
29
1.93
32912--32998
1
87.0
1
76
0
84
0
11
0
88
0.51
32911--32997
7
13.0
7
83
11
96
0
12
0
87
0.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32912--33000
20
4.4
20
83
9
110
0
12
0
87
0.54
40300--40331
15
2.1
15
94
0
55
40
6
21
31
1.78
45825--45885
3
20.0
3
86
3
77
59
0
0
40
0.98
45825--45883
12
4.8
12
89
4
91
57
0
0
42
0.98
47315--47474
60
2.7
60
79
1
160
32
23
5
38
1.78
47541--47614
3
25.0
3
97
2
141
66
0
0
33
0.92
47665--47801
60
2.3
61
82
9
158
35
7
25
32
1.83
49096--49144
19
2.8
17
76
11
53
48
8
0
42
1.32
49789--49844
28
2.0
27
83
13
69
55
19
7
17
1.65
51146--51189
23
1.9
23
86
9
63
29
0
0
70
0.88
51593--51652
24
2.6
23
78
17
63
45
0
1
53
1.10
51719--51775
21
2.8
21
69
12
55
56
0
0
43
0.99
51723--51776
23
2.5
21
73
8
56
55
0
0
44
0.99
51788--51834
22
2.1
23
88
11
71
55
2
0
42
1.12
51797--51839
22
2.0
22
86
9
61
58
2
0
39
1.11
51789--51868
23
3.4
23
81
13
76
52
1
0
46
1.08
52153--52187
17
2.1
17
94
0
61
31
25
20
22
1.98
53277--53317
22
1.9
22
85
5
57
58
0
7
34
1.26
54274--54540
138
1.9
138
80
3
304
27
13
12
46
1.79
57638--57681
17
2.5
18
88
3
63
63
0
4
31
1.14
64950--64995
20
2.3
20
85
7
58
41
4
19
34
1.71
66303--66349
19
2.4
20
85
3
60
46
6
14
31
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68568--68608
11
3.7
11
100
0
82
26
17
9
46
1.79
82298--82380
32
2.6
32
94
0
148
30
22
8
38
1.84
83405--83431
11
2.5
11
100
0
54
29
7
7
55
1.55
83913--83972
30
2.0
31
83
9
79
30
15
6
48
1.70
90886--90920
17
2.1
17
100
0
70
22
0
31
45
1.53
93470--93505
13
2.6
14
86
8
56
55
5
2
36
1.38
94817--94856
14
2.7
15
84
11
55
50
0
0
50
1.00
94826--94862
14
2.5
15
86
8
58
43
0
0
56
0.99
94838--94937
40
2.4
43
80
9
120
49
1
1
49
1.14
97489--97538
17
2.9
17
87
0
73
42
6
14
38
1.70
100267--100342
36
2.1
36
97
0
143
31
10
14
43
1.79
100765--100794
15
2.0
15
100
0
60
13
26
46
13
1.80
105263--105338
36
2.1
36
97
0
143
31
10
14
43
1.79

Tables:   1

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