genome.fa.s6614.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006614.1 Hibiscus syriacus cultivar Beakdansim tig00016230_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73103

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7787--7831	23	1.9	24	90	4	74	31	8	0	60	1.28
17723--17760	19	2.0	19	94	0	67	31	2	0	65	1.06
18245--18285	16	2.4	18	88	12	68	43	0	0	56	0.99
20495--20696	94	2.1	93	79	9	205	32	15	23	27	1.95
21183--21399	90	2.4	90	90	0	335	40	8	19	30	1.82
21183--21399	45	4.8	45	86	2	274	40	8	19	30	1.82
21186--21461	135	2.0	135	80	4	306	40	8	19	31	1.81
22902--22967	16	4.1	17	74	14	59	51	24	1	22	1.57
23232--23270	18	2.2	18	85	0	51	7	25	30	35	1.84
24846--24928	22	3.7	22	85	3	94	18	26	31	24	1.97
24846--24916	22	3.2	22	88	4	97	18	25	35	21	1.95
32244--32290	21	2.2	21	100	0	94	46	0	25	27	1.53
33158--33235	2	39.0	2	97	0	147	50	1	0	48	1.09
33528--33559	2	16.0	2	100	0	64	50	0	0	50	1.00
36073--36126	7	8.4	7	84	12	64	24	27	29	18	1.98
36073--36131	20	3.2	19	88	7	77	22	27	32	18	1.97
36099--36166	17	4.0	17	92	0	91	19	23	39	17	1.92
36162--36251	19	4.7	19	86	6	119	27	30	24	17	1.97
36164--36251	9	9.1	10	74	12	85	28	30	22	18	1.97
37811--37860	21	2.3	21	80	10	57	34	20	24	22	1.97
37811--37855	22	2.1	21	84	12	56	33	15	26	24	1.95
38325--38767	45	9.8	45	85	1	564	41	9	18	31	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40138--40184	21	2.2	21	100	0	94	46	0	25	27	1.53
42797--42850	20	2.7	20	100	0	108	25	16	33	24	1.96
42704--42926	115	1.9	115	81	5	263	30	16	26	26	1.97
42897--42949	21	2.5	21	80	17	56	35	16	24	22	1.95
43411--43815	45	9.0	45	84	1	497	40	8	18	32	1.81
43945--44043	43	2.3	43	82	3	119	35	20	19	25	1.95
43973--44128	43	3.7	42	74	8	127	34	17	22	25	1.95
44094--44294	43	4.7	43	76	7	167	31	21	21	25	1.98
46668--46821	80	1.9	79	89	1	236	42	16	11	29	1.83
48971--49150	41	4.4	42	84	6	210	35	19	16	28	1.94
48971--49186	41	5.3	39	83	7	202	33	19	17	29	1.95
48971--49186	82	2.6	82	81	6	231	33	19	17	29	1.95
50724--50770	21	2.2	21	100	0	94	46	0	25	27	1.53
51639--51682	2	22.0	2	100	0	88	50	0	0	50	1.00
54113--54162	21	2.3	21	80	10	57	34	20	24	22	1.97
54113--54157	22	2.1	21	84	12	56	33	15	26	24	1.95
54629--55033	45	9.0	45	85	1	524	40	9	18	31	1.82
54636--55026	180	2.2	180	95	0	692	41	9	18	31	1.81
55185--55407	43	5.2	43	73	10	136	35	19	19	25	1.95
55213--55405	85	2.3	86	77	4	203	35	19	19	25	1.95
60084--60263	41	4.4	42	87	4	226	35	18	17	28	1.94
60084--60299	82	2.6	81	83	5	247	33	18	18	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60084--60299	41	5.3	39	85	5	218	33	18	18	29	1.95
60084--60343	82	3.2	81	79	8	199	32	18	18	30	1.95
61870--61916	21	2.2	21	96	0	85	48	0	25	25	1.51
62781--62842	2	31.0	2	100	0	124	50	0	0	50	1.00
63136--63171	2	18.0	2	100	0	72	50	0	0	50	1.00
65266--65315	21	2.3	21	80	10	57	34	20	24	22	1.97
65266--65310	22	2.1	21	84	12	56	33	15	26	24	1.95
65776--66214	45	9.8	45	85	2	560	40	9	19	31	1.83
65776--66214	179	2.4	179	92	0	698	40	9	19	31	1.83
65774--66214	224	2.0	224	86	1	625	40	9	19	31	1.83
69311--69341	15	2.1	15	100	0	62	41	25	6	25	1.79

Tables:   1

The End!