genome.fa.s6615.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006615.1 Hibiscus syriacus cultivar Beakdansim tig00016237_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123328

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1461--1545	43	2.0	42	88	6	127	30	11	22	35	1.90
1727--1788	14	4.5	13	73	16	54	17	16	11	54	1.70
3622--3661	11	3.8	10	87	9	53	90	0	10	0	0.47
3620--3661	13	3.2	13	93	0	75	90	0	9	0	0.45
3620--3658	16	2.5	15	88	12	60	89	0	10	0	0.48
6183--6427	75	3.3	75	88	1	330	32	14	22	31	1.93
7293--7504	54	3.9	54	93	0	361	34	14	25	25	1.94
7878--7938	22	2.8	22	87	0	95	37	11	11	39	1.78
8287--8536	120	2.1	121	85	6	341	38	16	16	28	1.90
9110--9239	32	4.0	33	73	5	102	36	3	11	49	1.55
9307--9384	16	4.8	16	68	13	52	37	0	8	53	1.32
12700--13478	277	2.8	277	96	0	1425	46	8	7	37	1.63
13237--13285	19	2.7	19	81	9	59	59	6	4	30	1.41
14261--14621	137	2.6	137	85	3	478	39	14	18	27	1.90
14847--14930	3	29.0	3	78	9	86	32	1	1	65	1.08
16419--16671	133	1.9	131	85	4	346	37	4	7	50	1.52
16569--16609	10	4.2	10	78	15	50	26	0	0	73	0.84
16572--16609	18	2.1	18	95	0	67	28	0	0	71	0.87
16435--16703	133	2.0	136	83	5	341	38	4	7	49	1.51
16686--16721	18	2.0	18	100	0	72	55	0	0	44	0.99
17468--17501	16	2.1	17	88	5	52	38	2	17	41	1.65
23889--23941	22	2.4	22	75	6	54	26	9	15	49	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27372--27405	16	2.1	17	88	5	52	44	5	8	41	1.60
29919--30228	103	3.0	103	83	4	410	40	15	15	28	1.88
29941--30099	53	3.1	53	64	21	145	41	15	13	29	1.85
30946--30971	2	13.0	2	100	0	52	50	0	0	50	1.00
31412--31455	17	2.6	18	86	10	58	68	0	4	27	1.09
31422--31478	28	2.1	27	83	3	69	64	1	1	31	1.13
31455--31489	17	2.1	17	89	10	54	54	8	0	37	1.31
31401--31495	45	2.1	45	82	7	113	63	4	2	30	1.25
37791--37948	77	2.0	77	89	4	237	33	15	15	34	1.90
38401--38453	21	2.5	21	93	0	88	30	30	20	18	1.97
38457--38519	19	3.1	19	68	16	54	25	20	17	36	1.94
38465--38533	21	3.3	21	67	15	61	21	20	23	34	1.96
38449--38570	42	3.0	42	90	2	185	22	18	22	36	1.95
40170--40200	2	15.5	2	93	0	53	48	3	0	48	1.17
40471--40495	2	12.5	2	100	0	50	48	0	0	52	1.00
42393--42434	22	1.9	22	95	0	75	57	2	16	23	1.51
44701--44745	22	2.0	22	91	0	72	26	17	22	33	1.96
53364--53396	3	11.0	3	100	0	66	66	0	33	0	0.92
53394--53422	2	14.5	2	100	0	58	51	0	48	0	1.00
66597--66639	21	2.0	21	81	0	50	30	30	25	13	1.94
66619--66769	67	2.2	68	91	2	243	30	29	25	14	1.95
67248--67551	149	2.0	149	98	0	590	27	16	20	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67530--67574	23	2.0	23	86	0	63	20	24	28	26	1.99
69191--69232	14	3.0	14	79	6	50	28	9	21	40	1.84
74618--74775	78	2.0	79	93	1	273	36	18	19	25	1.94
78388--78439	20	2.7	20	96	3	97	48	3	13	34	1.61
78492--78518	2	13.5	2	100	0	54	48	0	0	51	1.00
78950--79009	3	19.3	3	79	16	52	68	3	0	28	1.05
78949--79009	11	5.7	11	76	20	51	68	3	0	27	1.05
80442--80485	3	14.7	3	95	0	79	63	0	2	34	1.07
80737--81402	45	14.8	45	92	0	1071	33	18	23	23	1.97
82078--82154	22	3.5	22	85	0	91	36	14	11	37	1.82
86677--86715	20	2.0	20	94	0	69	43	23	0	33	1.54
93565--93596	2	16.0	2	100	0	64	50	0	0	50	1.00
94717--94766	23	2.2	23	96	0	91	42	14	26	18	1.87
107267--107394	59	2.2	59	89	0	193	26	17	25	30	1.98
114735--114770	19	1.9	19	88	5	56	30	19	0	50	1.48
116574--116627	28	1.9	28	88	0	81	12	12	12	61	1.58
117329--117371	16	2.7	16	96	0	77	6	9	23	60	1.51
118339--118680	42	8.2	42	79	8	267	33	21	21	23	1.97
118380--118680	83	3.6	85	81	8	291	33	20	22	22	1.97
121249--121710	41	11.4	41	82	6	415	34	19	18	27	1.95
121253--121710	80	5.7	80	76	8	381	34	19	18	27	1.95
122328--122375	25	2.0	24	84	12	62	31	4	8	56	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122783--122817	15	2.3	15	90	9	54	40	0	2	57	1.14
122883--122925	3	13.7	3	90	9	68	69	0	0	30	0.88
122882--122922	13	3.2	13	90	10	66	70	0	0	29	0.87
122883--122926	16	2.8	16	100	0	88	70	0	0	29	0.88

Tables:   1

The End!