Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006616.1 Hibiscus syriacus cultivar Beakdansim tig00016238_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102633

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7015--7044
14
2.1
14
100
0
60
36
16
33
13
1.88
7174--7266
29
3.2
29
73
16
84
48
1
2
48
1.20
7414--7638
53
4.2
53
87
1
317
20
26
22
30
1.98
8140--8265
42
3.0
42
89
2
191
31
22
20
25
1.98
8004--8222
122
1.8
120
85
4
305
32
21
18
27
1.96
8161--8265
20
5.1
20
69
17
88
30
21
21
25
1.99
8018--8396
160
2.3
160
84
4
467
31
21
18
28
1.97
8300--8392
42
2.2
42
86
0
132
30
21
22
25
1.99
16436--17030
302
2.0
302
94
0
1037
38
13
11
36
1.81
31503--31672
92
1.8
92
93
0
295
38
12
17
31
1.87
32968--33002
18
1.9
18
94
0
61
65
20
0
14
1.26
34729--34773
20
2.2
20
96
0
81
0
24
6
68
1.13
35199--35260
3
20.7
3
93
0
106
62
0
3
33
1.11
35259--35287
3
9.7
3
100
0
58
34
0
0
65
0.93
35610--36289
113
6.0
113
92
2
997
29
19
13
36
1.91
37017--37413
84
4.7
84
97
0
733
37
20
13
27
1.91
38179--38220
19
2.2
20
91
4
68
52
11
4
30
1.59
38555--38593
16
2.5
15
83
4
51
0
15
0
84
0.62
50876--50921
21
2.1
22
96
4
85
0
23
6
69
1.11
51348--51436
3
29.7
3
93
0
151
62
0
2
34
1.07
52764--52809
3
15.0
3
86
13
67
30
2
0
67
1.03
54645--54691
25
1.9
24
86
4
67
36
0
4
59
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59272--59312
3
14.0
3
87
5
57
65
0
4
29
1.13
59719--59819
42
2.4
42
83
6
125
33
20
21
23
1.97
59761--59821
20
2.9
21
69
14
54
36
21
19
22
1.95
59981--60087
42
2.6
42
85
4
128
28
20
24
26
1.99
59959--60543
228
2.6
225
87
2
839
33
18
18
28
1.95
62201--62329
40
3.2
39
77
2
105
27
17
12
43
1.84
63611--63672
19
3.0
20
73
17
56
4
19
0
75
0.97
63634--63678
16
2.6
18
89
10
67
4
20
0
75
0.97
70932--71002
3
24.0
3
91
5
83
69
0
5
25
1.10
77244--77295
3
17.3
3
84
7
70
36
1
0
61
1.07
83044--83147
15
7.3
15
81
12
89
80
3
13
1
0.93
83043--83147
34
3.0
35
77
18
110
80
3
13
1
0.92
83071--83133
32
2.0
32
87
3
92
84
1
12
1
0.78
83044--83147
7
14.7
7
73
15
81
80
3
13
1
0.93
83045--83147
23
4.9
20
75
21
68
80
3
13
1
0.93
83039--83147
46
2.3
46
78
7
114
80
3
12
2
0.95
84410--84528
59
2.0
59
91
0
193
32
21
20
26
1.97
87543--87663
59
2.1
59
88
0
179
35
21
18
24
1.95
89819--89880
20
3.2
20
68
21
60
30
16
14
38
1.88
89814--89917
37
2.8
37
89
1
147
31
19
13
35
1.90
90096--90135
21
1.9
21
85
10
55
42
12
7
37
1.71
90227--90496
70
4.0
66
79
8
301
30
18
12
38
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90504--90863
134
2.7
133
80
5
386
26
31
16
24
1.96
91048--91126
3
26.3
3
87
5
115
35
2
0
62
1.09
96518--96552
17
2.1
17
100
0
70
28
22
0
48
1.51
99454--99505
27
2.0
26
88
3
77
28
28
19
23
1.98

Tables:   1

The End!