genome.fa.s6617.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006617.1 Hibiscus syriacus cultivar Beakdansim tig00016247_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123215

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2592--2626	15	2.3	15	100	0	70	25	22	25	25	2.00
6256--6300	22	2.0	22	100	0	90	46	4	17	31	1.68
9259--9424	4	41.5	4	85	0	224	45	3	4	46	1.37
9259--9424	6	27.7	6	88	0	224	45	3	4	46	1.37
9259--9424	14	11.9	14	86	0	224	45	3	4	46	1.37
9550--9933	54	7.1	54	87	0	543	33	19	19	27	1.96
12828--12897	22	3.4	21	80	16	76	28	21	14	35	1.92
17558--17925	45	8.2	45	85	1	398	30	20	9	39	1.84
17581--17925	135	2.6	135	85	1	451	29	21	9	39	1.85
17991--18038	19	2.5	19	80	9	53	58	14	0	27	1.37
18338--18392	22	2.7	20	81	10	65	25	25	18	30	1.98
18404--18578	95	1.8	95	84	4	237	28	21	17	32	1.96
21634--21735	34	2.8	37	89	10	167	43	14	14	27	1.85
21634--21769	37	3.8	35	84	9	168	41	13	14	29	1.85
22391--22442	27	1.9	27	85	14	72	26	5	0	67	1.13
22394--22490	23	4.3	23	76	16	87	24	5	1	69	1.16
22462--22535	4	18.2	4	75	22	57	18	0	4	77	0.93
25514--25573	16	3.9	14	81	16	66	78	8	13	0	0.96
25532--25582	16	3.2	16	76	15	52	78	5	15	0	0.93
26227--26281	22	2.5	22	93	0	92	36	23	12	27	1.91
27239--27586	36	10.0	36	73	15	220	27	19	13	39	1.88
27259--27501	65	3.6	64	77	13	229	29	19	12	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27239--27649	138	3.0	136	84	2	525	27	19	12	39	1.88
27324--27593	73	3.8	73	76	10	306	26	18	13	41	1.88
27366--27550	102	1.8	102	86	2	273	27	17	14	41	1.88
27544--27718	65	2.6	66	84	3	217	32	21	9	36	1.85
28322--28875	105	5.3	105	87	5	737	33	25	18	22	1.96
29423--29524	34	2.8	37	89	10	167	43	14	14	27	1.85
29423--29558	37	3.8	35	84	9	168	41	13	14	29	1.85
30175--30333	4	38.2	4	68	24	66	23	3	2	71	1.13
30104--30285	77	2.5	72	81	13	178	25	6	2	65	1.28
30175--30277	21	4.6	23	73	20	67	25	4	0	68	1.15
30207--30333	25	4.9	26	73	23	74	22	2	3	71	1.12
30260--30328	5	14.4	5	79	11	65	20	0	4	75	0.97
30200--30273	32	2.4	31	76	15	80	24	4	1	70	1.13
30235--30329	46	2.1	46	83	11	117	20	1	4	74	1.04
59418--59805	194	2.0	194	98	1	760	31	18	18	31	1.95
66118--66307	84	2.3	82	81	10	181	31	2	13	53	1.52
75543--75742	100	2.0	99	91	0	319	46	15	13	25	1.82
81284--81332	23	2.1	23	81	7	55	44	2	4	48	1.33
92970--93003	2	17.0	2	100	0	68	50	0	0	50	1.00
95429--95485	3	18.0	3	85	10	78	33	3	0	63	1.12
99702--99802	31	3.3	31	97	0	193	17	15	5	60	1.55
102829--103264	53	8.0	54	80	8	386	28	10	18	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102829--103264	54	8.0	53	77	10	325	28	10	18	41	1.84
103351--103437	41	2.1	42	82	2	104	31	21	17	29	1.96
103560--103665	42	2.5	42	72	4	99	26	19	20	33	1.97
103702--103827	59	2.1	60	85	4	166	30	24	13	30	1.93
103906--103954	21	2.3	21	85	0	71	40	10	18	30	1.84
108207--108243	19	1.9	19	88	0	56	48	0	0	51	1.00
108631--108656	7	3.7	7	100	0	52	76	0	0	23	0.78
110522--110550	11	2.7	11	94	5	51	48	31	6	13	1.69
117118--117151	2	17.0	2	100	0	68	50	0	0	50	1.00
118824--118881	23	2.5	23	77	2	62	29	3	6	60	1.39

Tables:   1

The End!