genome.fa.s6620.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006620.1 Hibiscus syriacus cultivar Beakdansim tig00016260_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75314

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9590--9634	20	2.2	20	88	0	63	37	17	15	28	1.91
12893--12930	20	1.9	20	94	0	67	31	34	15	18	1.92
12892--13036	65	2.2	64	81	7	159	31	24	18	25	1.97
18377--18453	23	3.4	23	68	15	70	28	23	19	28	1.98
20218--20252	18	1.9	18	88	0	52	31	8	5	54	1.54
20554--20591	20	1.9	20	94	0	67	31	34	15	18	1.92
20637--20744	45	2.4	44	84	7	137	29	24	17	28	1.97
29110--29146	11	3.4	11	92	7	58	29	0	0	70	0.88
44908--45258	174	2.0	173	99	0	693	30	9	28	31	1.89
48604--48644	10	4.1	10	100	0	82	29	19	0	51	1.47
50222--50330	38	2.9	38	98	0	209	22	14	15	46	1.82
53980--54041	27	2.3	27	88	0	88	50	22	8	19	1.74
54351--54391	20	2.1	18	86	13	55	41	4	12	41	1.64
63369--63402	15	2.3	15	94	0	59	8	14	5	70	1.31
65335--65456	41	2.9	43	78	6	133	34	14	22	27	1.94
66512--66551	21	1.9	21	94	0	71	27	27	20	25	1.99
66862--66895	17	1.9	18	94	5	61	35	17	5	41	1.74
67058--67169	59	1.9	59	85	3	154	34	20	9	34	1.86
67086--67363	59	4.7	58	73	9	190	31	21	10	36	1.87
67113--67363	117	2.1	117	86	3	344	31	22	9	36	1.87
67101--67363	118	2.2	118	85	3	352	30	21	10	36	1.88
73984--74017	17	1.9	18	88	5	52	35	17	8	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74074--74110	19	2.0	19	85	15	51	43	18	5	32	1.73
74176--74384	57	3.7	56	71	14	151	29	23	11	34	1.91
74218--74484	114	2.3	114	80	8	265	29	22	11	36	1.90

Tables:   1

The End!