Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006622.1 Hibiscus syriacus cultivar Beakdansim tig00016270_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90278

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3919--4042
29
4.2
30
92
6
218
44
9
0
45
1.36
5478--5615
68
2.0
71
81
8
167
34
3
7
53
1.48
7816--7975
82
1.9
83
87
3
234
33
19
10
36
1.85
11447--11492
2
23.0
2
95
0
83
47
0
52
0
1.00
13042--13116
2
37.5
2
80
5
71
44
2
5
48
1.39
13880--14310
43
10.1
42
82
5
429
32
21
22
23
1.98
14854--14908
20
2.8
20
81
10
67
50
5
12
30
1.63
17886--18104
41
5.3
41
81
5
262
38
17
17
26
1.92
17882--18104
83
2.7
82
80
6
261
39
17
17
26
1.91
29027--29057
6
5.3
6
92
7
55
0
0
48
51
1.00
29027--29057
11
2.7
12
90
10
55
0
0
48
51
1.00
37048--37173
63
2.0
63
100
0
252
26
22
23
26
2.00
37065--37192
63
2.1
61
85
7
172
28
21
23
26
1.99
52456--52499
2
22.0
2
100
0
88
50
0
0
50
1.00
55031--55068
12
3.1
12
92
3
58
15
23
0
60
1.35
55682--55804
59
2.1
59
82
0
147
30
17
21
30
1.96
61107--61714
60
10.1
60
91
0
905
35
13
22
28
1.92
67556--68163
60
10.1
60
88
1
833
35
13
21
29
1.91
67556--68163
242
2.5
240
87
2
846
35
13
21
29
1.91
69982--70033
21
2.4
22
78
15
54
38
1
17
42
1.60
71987--72088
44
2.3
44
93
0
168
51
1
21
24
1.58
72063--72096
9
3.8
9
85
14
52
47
0
17
35
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74605--74727
58
2.1
59
86
4
169
28
15
25
30
1.96
81596--81668
11
6.5
11
70
22
53
78
0
17
4
0.91
81596--81668
34
2.1
34
87
9
105
78
0
17
4
0.91
81592--81683
12
8.0
11
74
13
71
76
0
18
5
0.98
82681--82807
44
2.9
44
85
2
166
33
14
20
31
1.92
84194--84488
45
6.7
43
75
13
201
26
14
16
42
1.87
84237--84519
45
6.3
45
79
8
258
24
14
16
44
1.85
84228--84497
135
2.0
135
84
1
353
26
13
16
43
1.84
84194--84517
90
3.6
89
77
6
307
24
15
16
43
1.86
84497--84538
21
2.0
21
100
0
84
4
28
14
52
1.62
84453--84585
66
2.0
66
89
2
205
15
20
17
46
1.84
84519--84628
45
2.4
44
83
5
130
17
19
16
47
1.83
84417--84628
111
1.9
111
84
5
286
19
18
16
45
1.85
84518--84672
45
3.4
45
80
3
125
18
17
17
46
1.84
84375--84657
156
1.8
156
81
3
354
21
16
17
44
1.87
85427--86892
131
11.1
131
79
4
1364
31
19
17
31
1.95
85844--87107
391
3.3
383
79
8
1080
31
19
17
31
1.95

Tables:   1

The End!