Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006624.1 Hibiscus syriacus cultivar Beakdansim tig00016279_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47062

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6262--6319
8
7.1
8
74
18
57
72
0
5
22
1.04
6220--6319
34
2.7
36
82
14
116
70
0
5
25
1.08
6359--6399
17
2.4
17
92
8
66
73
0
4
21
1.02
7812--7851
18
2.5
15
88
12
53
17
7
0
75
1.03
8272--8466
72
2.7
73
80
12
215
55
11
1
31
1.43
10125--10237
5
21.8
5
71
13
77
70
2
5
21
1.19
10184--10251
22
3.2
20
80
10
73
73
4
7
14
1.21
15672--15761
35
2.5
36
87
5
121
71
0
4
24
1.05
15666--15759
13
6.8
14
69
10
59
71
0
4
24
1.04
15805--15847
18
2.4
18
88
7
61
72
0
2
25
0.97
16464--16505
14
2.9
15
75
10
52
61
4
0
33
1.17
16438--16627
76
2.6
75
86
9
250
55
13
0
30
1.42
16520--16627
24
4.3
24
65
21
69
56
14
0
27
1.45
16439--16663
76
3.0
75
78
12
241
56
12
1
30
1.44
17318--17388
25
3.0
23
75
24
76
42
4
1
52
1.29
17329--17388
22
2.6
22
82
17
77
41
5
1
51
1.33
17338--17399
25
2.4
24
81
10
70
43
3
1
51
1.27
17533--17611
31
2.5
32
79
6
90
48
11
7
32
1.68
17921--17965
21
2.1
21
84
8
56
37
2
4
55
1.32
23176--23263
39
2.3
39
93
0
149
34
21
15
28
1.94
27256--27293
7
5.4
7
100
0
76
26
28
28
15
1.96
27290--27347
5
10.8
5
78
14
62
6
22
51
18
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27283--27347
22
3.0
22
100
0
130
9
23
49
18
1.76
27344--27421
19
4.2
18
78
14
86
28
29
28
14
1.95
27344--27441
28
3.4
28
81
5
99
29
27
27
15
1.96
27344--27441
9
10.3
9
77
10
88
29
27
27
15
1.96
34546--34576
7
4.4
7
100
0
62
25
29
29
16
1.96
34573--34635
5
11.8
5
80
12
72
6
22
52
19
1.68
34578--34661
22
3.6
22
93
6
132
9
23
48
17
1.76
34565--34672
26
4.3
26
88
10
152
12
25
45
16
1.83
34658--34736
19
4.2
18
78
16
88
27
29
29
13
1.95
34683--34757
29
2.5
31
89
8
120
29
26
26
17
1.97
34658--34756
9
10.3
9
80
10
90
29
27
28
15
1.96
43671--43738
33
2.1
33
97
0
127
44
16
14
25
1.85

Tables:   1

The End!