genome.fa.s6626.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006626.1 Hibiscus syriacus cultivar Beakdansim tig00016283_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53346

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
947--1011	8	8.4	8	69	24	50	9	12	0	78	0.96
947--985	13	2.8	14	84	7	53	10	12	0	76	1.01
947--1003	17	3.0	20	78	21	70	8	12	0	78	0.95
952--1014	16	4.1	15	83	15	76	7	11	0	80	0.89
952--1003	10	5.3	10	76	19	56	7	11	0	80	0.89
939--1021	27	3.1	27	83	10	107	8	13	0	78	0.96
939--1021	21	4.6	18	73	18	73	8	13	0	78	0.96
12739--12784	24	1.9	24	100	0	92	50	6	4	39	1.48
13015--13044	2	15.0	2	100	0	60	50	0	0	50	1.00
13169--13384	102	2.1	102	93	0	369	51	11	7	29	1.65
13375--13413	2	19.5	2	100	0	78	51	0	0	48	1.00
13161--13380	49	4.4	49	90	5	327	51	11	7	29	1.65
13959--13991	15	2.2	15	89	10	50	69	3	0	27	1.03
15337--15394	3	19.7	3	89	3	91	62	1	0	36	1.06
15565--15799	105	2.2	105	97	0	445	24	19	16	40	1.91
15746--15830	35	2.4	35	100	0	170	21	22	12	43	1.86
15779--16115	136	2.5	136	92	2	540	24	22	17	35	1.96
16654--16871	107	2.0	107	85	3	296	23	25	17	33	1.96
16654--16871	53	4.1	53	89	2	285	23	25	17	33	1.96
16882--18727	53	34.3	54	86	3	2316	28	27	13	30	1.95
16914--18727	108	16.8	108	89	3	2581	28	27	14	30	1.95
21297--21336	20	2.1	19	85	4	53	10	17	0	72	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24324--24413	45	2.0	45	82	4	110	36	23	10	30	1.87
29078--29174	27	3.6	28	72	21	82	35	2	4	58	1.29
29832--29861	2	15.0	2	100	0	60	50	0	0	50	1.00
29956--30001	24	1.9	24	100	0	92	39	4	6	50	1.48
31461--31487	14	1.9	14	100	0	54	22	18	29	29	1.97
33179--33294	21	5.7	20	67	16	67	33	22	19	24	1.97
33333--33527	20	9.6	21	75	9	124	36	23	19	20	1.95
33374--33525	40	3.8	40	91	0	232	38	23	18	19	1.93
33359--33525	60	2.8	61	81	3	176	37	22	19	20	1.94
34085--34180	20	4.8	20	79	7	88	48	20	17	12	1.79
34148--34188	19	2.2	19	90	0	64	46	26	17	9	1.79
34192--34265	39	1.9	38	86	2	103	13	20	18	47	1.82
34192--34265	19	3.8	19	83	3	103	13	20	18	47	1.82
35945--36324	94	4.1	94	95	1	647	21	11	18	47	1.80
36442--36495	19	2.8	19	88	0	81	50	22	20	7	1.73
36442--36504	19	3.3	19	82	4	74	47	22	19	11	1.80
36539--36597	20	3.0	20	94	0	100	22	20	20	37	1.95
37089--37193	21	5.0	21	72	3	86	20	36	19	23	1.95
37086--37196	42	2.6	42	77	5	109	20	36	18	23	1.95
38493--38545	14	3.9	13	76	9	52	33	0	18	47	1.49
38633--38728	33	2.8	33	88	3	129	42	20	22	13	1.87
38757--38834	24	3.2	24	90	3	122	39	20	19	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39688--39981	20	14.6	19	76	12	209	20	18	23	36	1.95
39688--39958	41	6.7	40	87	2	339	20	18	23	37	1.94
39688--39958	120	2.2	121	88	2	393	20	18	23	37	1.94
39710--40019	161	1.9	160	83	4	401	20	18	23	37	1.94
39967--40019	20	2.7	20	82	5	63	16	18	22	41	1.90
46685--46737	2	27.0	2	96	3	99	49	0	0	50	1.00
47664--47775	32	3.6	32	79	8	140	44	37	8	8	1.67

Tables:   1

The End!