genome.fa.s6627.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006627.1 Hibiscus syriacus cultivar Beakdansim tig00016284_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  218705

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2328--2394	3	22.3	3	100	0	134	67	0	0	32	0.91
2393--2429	3	12.3	3	100	0	74	32	0	0	67	0.91
10651--10703	15	3.5	15	82	14	72	54	13	11	20	1.69
11343--11481	43	3.2	44	80	3	156	34	12	22	30	1.92
12698--13010	38	8.1	38	80	2	338	27	17	14	40	1.88
12935--13145	45	4.8	45	79	1	203	25	19	16	38	1.92
12977--13144	90	1.9	90	89	0	264	23	19	17	39	1.92
13141--13749	135	4.5	134	83	3	668	30	18	18	32	1.95
13141--13749	271	2.2	271	84	3	726	30	18	18	32	1.95
13960--13997	3	13.0	3	94	5	69	34	0	0	65	0.93
14639--14679	17	2.3	19	84	16	52	17	7	0	75	1.02
17078--17120	22	2.0	22	100	0	86	34	18	4	41	1.71
24550--24611	21	3.0	21	71	4	63	32	12	27	27	1.93
27735--27788	21	2.6	20	80	8	63	29	12	24	33	1.92
29545--29771	45	5.0	45	85	2	278	30	19	9	40	1.84
37960--38013	21	2.6	20	80	8	63	29	12	24	33	1.92
39771--39997	45	5.0	45	85	2	278	30	18	10	40	1.84
46251--46477	45	5.0	45	86	1	285	29	19	9	42	1.82
49416--49440	12	2.1	12	100	0	50	60	16	0	24	1.36
59744--59819	29	2.6	29	87	2	107	21	9	9	60	1.55
60695--60758	31	2.1	31	87	0	92	26	9	9	54	1.62
63373--63526	75	2.0	76	97	1	292	47	12	23	16	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64928--64992	30	2.2	29	86	8	87	16	20	16	46	1.85
70952--70989	19	2.0	20	89	5	60	36	5	10	47	1.61
71707--71747	16	2.7	16	77	7	50	36	0	0	63	0.95
71927--72009	30	2.8	30	81	3	87	45	14	15	24	1.83
72839--72879	20	2.0	20	86	9	57	41	2	17	39	1.62
74230--74349	41	2.9	41	80	2	134	30	23	16	29	1.96
74230--74345	21	5.7	20	67	6	54	31	21	17	29	1.96
76566--76605	20	2.0	20	90	0	62	47	12	12	27	1.77
77869--77945	32	2.4	32	91	0	118	44	3	15	36	1.65
77869--77960	32	2.9	32	85	0	103	42	5	17	34	1.72
87546--87658	20	5.7	20	74	8	104	30	13	15	40	1.86
87537--87675	40	3.5	40	82	3	172	31	11	17	38	1.86
87611--87686	20	3.8	19	77	8	71	32	7	19	39	1.81
93518--93551	17	2.0	17	88	0	50	58	0	0	41	0.98
99332--99405	21	3.5	20	75	15	69	18	25	31	24	1.98
99370--99407	20	1.9	20	94	0	67	15	26	34	23	1.95
108003--108440	82	5.4	82	80	3	465	23	18	20	37	1.94
108479--108821	89	3.8	89	81	5	305	30	20	17	31	1.96
108479--108819	178	1.9	181	81	7	417	30	20	17	31	1.96
108862--108931	29	2.4	29	76	4	70	37	10	21	31	1.86
109060--109193	38	3.5	37	86	2	160	35	14	20	29	1.93
109109--109423	167	1.9	167	90	1	506	34	14	23	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109276--109365	38	2.4	38	94	0	153	36	14	25	23	1.93
109275--109471	100	2.0	100	88	2	297	35	15	22	25	1.94
109380--109461	38	2.2	38	86	0	110	39	15	19	25	1.91
123366--123415	2	25.0	2	91	0	82	46	0	4	50	1.20
127722--127821	44	2.2	45	80	8	112	35	19	10	36	1.85
127736--127828	44	2.1	44	84	7	118	39	18	9	32	1.83
132976--133046	31	2.3	31	88	7	101	42	16	16	23	1.89
133772--133868	19	4.8	20	78	13	67	29	25	14	29	1.95
133817--133869	19	2.8	19	100	0	106	26	24	16	32	1.97
135282--135314	3	11.3	3	93	6	59	63	0	0	36	0.95
139516--139638	30	4.0	30	82	10	142	34	23	18	22	1.96
145471--145967	134	3.7	134	79	7	488	32	16	18	32	1.93
147442--147487	22	2.1	22	88	8	67	6	15	0	78	0.95
147452--147493	11	3.8	12	87	12	56	7	14	0	78	0.95
153307--153462	57	2.8	57	90	4	228	29	21	8	41	1.82
161302--161331	10	3.0	10	95	0	51	43	26	0	30	1.55
184256--184353	47	2.2	46	87	5	137	37	9	22	30	1.85
191367--191480	47	2.5	45	84	6	149	37	8	24	28	1.85
194808--194848	18	2.3	18	91	0	64	19	7	4	68	1.32
203367--203401	12	2.9	12	91	0	52	80	2	14	2	0.95
205059--205097	18	2.2	18	85	0	51	25	5	0	69	1.09
215395--215430	16	2.2	16	90	0	54	38	0	2	58	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
216047--216083	16	2.3	16	100	0	74	37	21	40	0	1.54

Tables:   1

The End!