genome.fa.s6629.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006629.1 Hibiscus syriacus cultivar Beakdansim tig00016287_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83574

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1114--1176	4	16.0	4	80	9	67	28	1	23	46	1.62
1264--1307	21	2.1	21	87	8	63	45	18	2	34	1.62
1283--1342	17	3.7	17	75	18	65	50	13	0	36	1.42
1288--1359	32	2.2	32	95	0	126	51	11	0	37	1.38
2289--2341	13	4.1	13	75	15	56	50	1	3	43	1.30
2316--2416	43	2.5	42	80	6	118	47	2	4	44	1.40
3643--3681	18	2.2	18	95	0	69	35	41	2	20	1.66
5184--5255	19	3.8	19	81	5	83	31	15	2	50	1.58
5181--5255	38	2.0	38	86	5	107	30	14	2	52	1.56
7798--7870	29	2.4	31	80	8	80	27	16	12	43	1.83
15174--15213	20	2.0	20	90	0	62	20	35	25	20	1.96
15217--15256	21	1.9	21	84	0	53	25	37	27	10	1.88
19899--19999	53	1.9	53	89	0	157	46	14	7	30	1.73
22844--22953	57	2.0	55	81	3	130	20	30	2	46	1.64
23394--23426	16	2.1	16	94	5	59	51	6	6	36	1.51
40698--40868	27	6.3	27	92	0	279	22	38	14	25	1.92
44074--44113	20	2.0	21	85	5	55	30	10	2	57	1.45
47172--47230	31	1.9	31	86	13	86	77	1	6	13	1.03
47172--47285	6	18.7	6	70	16	74	78	0	7	14	1.01
47215--47285	25	2.9	24	77	6	79	80	1	5	12	0.95
47400--47445	10	4.4	11	75	10	51	71	0	4	23	1.03
47491--47533	18	2.4	18	88	7	61	72	0	6	20	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48893--49371	42	11.2	41	62	19	133	22	23	24	29	1.99
48888--49628	86	8.6	86	88	2	1026	22	23	24	29	1.99
48935--49249	44	7.3	44	62	18	142	22	24	24	28	1.99
48881--49638	258	2.9	258	89	0	1140	22	23	24	29	1.99
59894--59932	16	2.4	16	95	0	69	30	12	28	28	1.93
61013--61057	20	2.2	20	100	0	90	0	35	33	31	1.58
62149--62191	18	2.4	18	92	7	70	74	0	4	20	1.00
62882--62910	12	2.3	13	94	5	51	58	3	0	37	1.15
63994--64112	39	3.1	39	78	10	145	49	0	13	36	1.48
64484--64508	13	1.9	13	100	0	50	60	0	0	40	0.97
64472--64530	29	2.0	29	83	6	75	55	0	0	44	0.99
64472--64534	30	2.1	29	85	2	81	55	0	0	44	0.99
64793--64842	2	25.0	2	100	0	100	50	0	0	50	1.00
64884--64923	19	2.2	19	91	8	66	42	27	7	22	1.80
66301--66351	22	2.3	22	100	0	102	41	5	7	45	1.57
72781--72835	18	2.8	19	75	10	58	43	1	1	52	1.22
72934--72972	2	19.5	2	100	0	78	48	0	0	51	1.00
73084--73165	19	3.8	19	71	28	67	40	0	31	28	1.57
73099--73184	27	3.5	27	71	23	89	41	0	31	26	1.56
73050--73255	46	4.3	46	79	10	186	42	0	27	30	1.56
73198--73226	15	1.9	15	100	0	58	41	0	20	37	1.53
73160--73262	53	1.9	53	86	7	147	42	0	26	31	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73213--73292	37	2.1	37	82	11	92	38	0	28	32	1.57
73391--73753	199	1.8	200	87	3	543	15	17	13	52	1.74
73685--73744	10	5.9	10	71	9	50	13	8	3	75	1.16
74270--74397	2	65.5	2	92	4	208	47	0	0	51	1.06
74470--74504	10	3.9	9	85	14	54	45	0	0	54	0.99

Tables:   1

The End!