Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006630.1 Hibiscus syriacus cultivar Beakdansim tig00016291_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74423

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7133--7195
25
2.5
25
92
2
108
22
23
44
9
1.82
13050--13078
12
2.4
12
100
0
58
27
48
17
6
1.72
16300--16534
109
2.2
109
94
3
420
34
7
20
37
1.81
22312--22360
21
2.3
22
86
10
66
42
2
2
53
1.24
24407--24559
63
2.3
67
79
10
174
41
3
9
45
1.54
29781--29812
16
1.9
17
93
6
57
50
12
25
12
1.75
30139--30187
16
3.0
16
80
14
55
81
8
0
10
0.87
30142--30205
17
3.5
17
79
10
65
81
7
0
10
0.88
32202--33008
39
20.6
39
88
2
1141
35
14
16
32
1.90
32202--33008
79
10.3
78
88
1
1141
35
14
16
32
1.90
32337--32401
22
3.2
22
62
28
52
30
12
20
36
1.89
32202--33008
118
6.9
117
88
1
1150
35
14
16
32
1.90
32982--33177
76
2.6
76
89
4
290
39
14
15
30
1.87
33027--33147
40
3.1
39
69
9
122
36
14
18
31
1.90
40751--40812
32
2.0
32
83
3
81
43
3
3
50
1.34
40863--40979
61
1.9
63
84
7
159
42
5
7
44
1.55
49922--49962
19
2.1
20
86
4
57
21
7
41
29
1.80
50440--50468
13
2.2
13
100
0
58
6
6
0
86
0.72
50438--50474
16
2.2
18
85
9
51
8
8
0
83
0.80
55253--55805
55
10.1
55
87
1
732
30
16
16
35
1.92
55253--55805
164
3.4
165
87
1
768
30
16
16
35
1.92
56401--56519
2
59.5
2
100
0
238
50
0
0
49
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60470--60794
55
5.9
55
90
0
463
31
16
17
34
1.92
65210--65254
13
3.5
13
81
3
56
31
0
17
51
1.46
65589--65694
48
2.2
48
83
3
133
23
23
22
30
1.99
65589--65691
24
4.3
24
81
3
109
24
24
21
30
1.99
66806--66905
50
2.0
50
98
0
191
33
28
21
18
1.96
67774--67821
22
2.1
22
84
3
60
22
8
2
66
1.29
68721--68785
18
3.6
18
95
2
112
47
6
3
43
1.43

Tables:   1

The End!