Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006633.1 Hibiscus syriacus cultivar Beakdansim tig00016301_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95510

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
408--439
17
1.9
17
93
6
57
56
3
0
40
1.15
744--871
65
1.9
67
87
3
188
38
17
21
22
1.93
752--896
30
4.6
30
75
13
121
37
19
20
22
1.94
5118--5151
9
3.7
9
92
7
59
0
8
0
91
0.43
5118--5152
10
3.6
10
96
3
63
0
8
0
91
0.42
13366--13439
20
3.5
20
76
8
76
25
18
22
32
1.97
21331--21432
51
2.0
51
96
0
186
41
7
4
46
1.54
21952--21993
17
2.5
17
96
0
75
42
0
28
28
1.56
22294--22531
117
2.0
118
90
4
381
42
6
20
31
1.77
22685--22929
122
2.0
122
95
0
445
34
13
15
36
1.87
24756--24796
19
2.2
19
100
0
82
14
24
26
34
1.94
24762--24805
19
2.4
19
88
3
63
15
31
27
25
1.96
26679--26703
5
5.0
5
100
0
50
20
20
20
40
1.92
28124--28187
24
2.7
24
97
0
119
51
10
4
32
1.58
30173--30227
21
2.6
21
94
0
92
23
9
29
38
1.85
32435--32470
17
2.1
17
100
0
72
27
11
44
16
1.82
47115--47207
3
31.0
3
97
0
177
33
1
0
65
1.00
48977--49033
22
2.6
23
75
10
57
40
5
7
47
1.53
61063--61101
18
2.3
17
86
8
53
46
28
0
25
1.53
63170--63332
87
1.9
87
96
0
299
41
11
14
32
1.81
63467--65959
182
13.6
182
90
3
3958
28
17
13
41
1.86
63775--63823
20
2.5
20
96
0
89
40
16
6
36
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63467--65959
726
3.4
725
95
1
4423
28
17
13
41
1.86
66636--66660
11
2.3
11
100
0
50
36
24
8
32
1.84
71172--71219
19
2.5
19
93
3
78
47
18
18
14
1.82
71197--71481
39
7.3
39
95
0
446
38
18
16
26
1.92
71506--71684
36
4.9
36
71
4
119
39
8
17
34
1.80
71547--71701
36
4.2
37
73
8
120
39
10
16
32
1.84
72858--72905
18
2.8
17
87
9
71
0
10
6
83
0.81
73144--73199
2
28.0
2
100
0
112
50
0
0
50
1.00
77132--77164
16
2.1
16
94
0
57
36
3
27
33
1.72
80025--80094
27
2.5
28
77
9
72
47
2
0
50
1.16
84629--84670
17
2.5
17
84
0
57
42
11
14
30
1.81
95448--95485
20
1.9
20
89
10
60
21
28
5
44
1.73

Tables:   1

The End!