genome.fa.s6634.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006634.1 Hibiscus syriacus cultivar Beakdansim tig00016314_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95621

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2465--2507	17	2.7	16	80	19	54	65	13	11	9	1.48
2866--3024	55	2.9	55	83	3	178	20	23	11	44	1.84
5032--5089	2	29.0	2	92	0	98	50	3	0	46	1.18
6996--7025	9	3.2	9	90	9	51	13	0	63	23	1.29
14921--14961	20	2.1	20	82	13	50	14	17	7	60	1.55
18531--18570	16	2.5	16	91	0	62	47	27	2	22	1.64
18888--19214	103	3.1	102	76	10	336	30	15	12	40	1.85
19153--19290	36	3.8	35	81	5	143	32	19	13	34	1.90
19452--19552	49	2.1	49	90	3	159	29	8	15	45	1.77
19507--19669	66	2.5	66	75	9	154	32	12	13	41	1.83
19676--19808	27	4.8	27	83	11	144	24	8	15	51	1.70
19844--19901	30	2.0	30	86	3	82	31	12	12	44	1.78
19640--19904	29	9.0	29	72	19	133	28	11	13	46	1.79
19761--19975	91	2.4	89	80	9	245	26	13	15	45	1.83
20052--20173	29	4.2	29	80	15	117	26	12	13	48	1.77
20064--20173	58	1.9	58	88	3	168	22	11	13	51	1.73
20182--20489	134	2.4	128	84	6	377	26	29	17	26	1.98
20643--20686	3	15.0	3	95	4	81	34	0	0	65	0.93
25963--26015	17	3.1	17	83	0	61	37	13	5	43	1.67
30662--30713	13	4.0	13	85	5	61	34	17	21	26	1.95
30662--30713	26	2.0	26	84	0	68	34	17	21	26	1.95
32189--32341	78	2.0	79	84	7	206	39	9	13	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32492--32671	73	2.5	71	81	5	195	42	9	13	34	1.77
32723--33397	99	6.7	99	80	6	646	36	10	14	37	1.81
32746--33397	199	3.2	194	80	8	589	36	10	14	38	1.80
33805--33963	74	2.2	73	82	5	187	33	15	8	42	1.77
38262--38312	21	2.4	21	84	12	61	68	0	7	23	1.15
38490--38535	2	24.0	2	91	8	78	52	0	0	47	1.00
44769--44824	25	2.2	25	100	0	112	21	42	10	25	1.85
45317--45368	22	2.4	22	90	0	77	44	17	13	25	1.85
45327--45370	22	2.0	22	100	0	88	40	18	13	27	1.88
46483--47824	671	2.0	671	97	0	2522	30	18	20	30	1.96
51951--52031	42	1.9	41	82	9	101	30	17	18	33	1.94
51998--52210	88	2.4	88	77	9	213	30	23	19	26	1.98
52065--52217	44	3.5	43	79	5	164	28	26	18	25	1.98
52247--52358	43	2.6	43	84	4	138	33	20	15	30	1.93
54097--54121	13	1.9	13	100	0	50	80	0	0	20	0.72
55916--55962	16	2.9	17	78	15	55	42	0	2	55	1.12
56857--56914	10	5.6	10	76	8	53	20	6	5	67	1.34
56857--56914	21	2.8	21	76	5	64	20	6	5	67	1.34
57542--57572	16	1.9	16	93	0	53	35	6	16	41	1.74
58500--58563	28	2.3	28	97	0	119	35	9	3	51	1.50
60853--60905	18	3.4	16	78	19	58	35	0	1	62	1.06
60866--60907	17	2.4	19	84	15	63	35	0	2	61	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61041--61168	55	2.3	55	91	4	204	35	1	6	56	1.34
69831--69885	22	2.5	23	78	21	64	23	7	7	61	1.47
69942--72537	647	4.0	648	99	0	5153	33	14	15	36	1.88
73473--73598	47	2.8	43	80	11	128	30	17	8	42	1.79
84247--84373	48	2.8	47	79	10	131	32	15	8	43	1.78
89242--89288	24	2.0	24	83	8	60	68	2	2	27	1.13
91137--91280	72	2.0	72	90	2	227	36	16	19	27	1.93
91137--91277	36	3.9	35	74	9	133	36	16	19	27	1.93

Tables:   1

The End!