Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006636.1 Hibiscus syriacus cultivar Beakdansim tig00016328_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  160039

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5491--5616
47
2.8
45
84
9
168
31
19
7
40
1.81
8715--8778
24
2.7
24
82
0
74
23
10
17
48
1.78
8805--9104
154
1.9
155
84
1
404
23
12
28
36
1.90
14899--14928
6
5.0
6
100
0
60
66
0
0
33
0.92
16821--16889
30
2.4
29
85
9
88
37
18
2
40
1.66
48776--48823
24
2.0
24
100
0
96
33
12
12
41
1.80
71372--71430
28
2.1
28
100
0
118
30
20
10
38
1.86
72154--72263
54
2.1
54
96
1
204
38
18
12
30
1.88
76879--76903
5
5.0
5
100
0
50
80
20
0
0
0.72
80404--80454
6
8.7
6
97
2
95
33
13
0
52
1.41
81829--81947
38
3.1
38
63
10
89
37
5
15
41
1.71
81812--81989
76
2.3
77
83
2
234
38
8
15
36
1.79
82745--82937
29
6.7
29
76
8
99
47
6
6
39
1.55
82777--82910
58
2.3
58
83
2
171
49
5
5
38
1.52
82748--82907
87
1.8
87
83
2
214
48
6
6
38
1.54
82915--82983
28
2.5
28
79
11
88
43
15
2
37
1.62
82887--82979
28
3.3
28
77
8
82
44
11
2
41
1.53
84812--84838
13
2.1
13
100
0
54
37
18
14
29
1.91
85956--85994
17
2.3
17
86
8
53
76
2
20
0
0.90
85968--86009
5
8.4
5
84
10
59
78
0
21
0
0.75
85949--86010
20
3.4
18
82
8
72
77
3
19
0
0.90
89294--89327
8
4.1
8
85
7
50
38
32
0
29
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92524--92576
25
2.1
26
83
13
67
73
5
1
18
1.12
94147--94196
26
1.9
26
84
8
66
58
2
4
36
1.29
96516--96540
12
2.1
12
100
0
50
52
24
8
16
1.70
96600--96646
20
2.3
20
92
0
76
25
23
14
36
1.93
104174--104225
21
2.5
21
87
6
70
5
7
34
51
1.54
107129--107800
336
2.0
336
95
0
1200
37
12
16
32
1.87
112232--112270
21
1.9
21
84
5
53
33
10
20
35
1.86
115664--115751
3
30.3
3
75
6
65
39
2
3
54
1.30
115657--115750
15
6.3
15
74
9
75
41
2
3
53
1.29
115663--115731
26
2.7
26
86
2
77
43
2
1
52
1.25
119094--119183
45
2.0
45
84
0
117
31
7
24
36
1.84
124134--124247
8
14.6
8
77
15
80
76
0
16
7
1.00
124136--124240
7
14.7
7
80
13
90
76
0
16
7
1.01
124132--124252
14
9.1
14
75
18
91
76
0
15
7
0.99
125528--125652
37
3.4
37
88
3
180
38
20
17
23
1.93
125646--125724
41
1.9
41
89
0
122
26
16
24
32
1.96
125777--125874
42
2.3
42
84
3
117
29
16
18
35
1.93
125642--125908
135
2.0
133
87
1
381
31
17
21
29
1.96
126506--127400
53
16.8
53
83
4
1115
30
21
26
21
1.98
127588--127663
3
26.3
3
81
7
86
38
1
1
59
1.14
129031--129077
20
2.5
20
89
6
71
42
8
25
23
1.82
142714--142753
12
3.3
12
78
0
53
20
10
35
35
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
149087--149133
12
3.9
12
80
0
58
21
10
31
36
1.88
150949--151010
31
2.0
31
100
0
124
51
3
19
25
1.62
155748--155799
24
2.2
23
83
10
68
23
9
30
36
1.87

Tables:   1

The End!