Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006637.1 Hibiscus syriacus cultivar Beakdansim tig00016334_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68812

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1832--2406
135
4.3
135
84
2
687
31
18
19
30
1.96
1888--2406
265
1.9
268
85
3
726
30
19
19
30
1.96
2402--2612
45
4.8
45
79
4
196
38
17
20
24
1.93
2403--2570
90
1.9
90
85
0
237
38
18
20
22
1.93
2537--2849
38
8.1
38
84
1
374
41
15
16
27
1.88
4066--4208
44
3.3
44
83
1
171
29
23
13
33
1.93
4845--4896
15
3.4
15
82
15
70
19
11
13
55
1.68
10286--10317
16
2.0
17
88
11
50
34
31
0
34
1.58
13136--13183
3
16.0
3
100
0
96
66
0
0
33
0.92
13182--13252
3
24.0
3
97
2
135
33
0
0
66
0.92
21374--21795
158
2.7
157
85
3
526
45
5
19
30
1.73
22340--22394
25
2.2
25
93
0
92
38
14
0
47
1.45
25288--25366
39
2.0
39
92
0
131
25
25
13
35
1.93
27654--27738
31
2.7
31
80
7
75
34
9
20
36
1.85
28971--29030
22
2.7
22
97
0
111
35
0
15
50
1.44
31016--31130
24
4.8
24
81
9
128
40
16
19
23
1.90
32089--32142
21
2.6
21
84
0
81
33
14
24
27
1.94
32296--32352
21
2.8
21
75
2
62
36
19
14
29
1.91
34461--34501
22
1.9
22
85
5
57
7
17
12
63
1.50
35323--35370
16
2.9
16
96
3
87
29
2
12
56
1.48
39185--39375
35
5.5
35
77
3
190
26
21
17
34
1.96
56941--56996
20
2.8
20
83
2
67
35
17
17
28
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58119--58168
19
2.5
20
84
12
68
72
0
6
22
1.07
60430--60526
5
18.8
5
68
10
52
71
2
5
21
1.16
60430--60472
20
2.2
20
87
8
61
72
0
2
25
0.97
60479--60527
11
4.5
11
82
5
64
79
2
4
14
0.97
60480--60538
22
2.7
23
84
10
70
77
1
6
13
1.03
60481--60530
16
3.1
17
74
8
50
80
2
4
14
0.95
66770--66878
18
6.0
19
67
27
67
59
13
0
26
1.35
66770--66806
19
2.0
18
89
5
56
56
13
0
29
1.37
66781--66907
24
5.3
25
71
20
92
61
12
0
25
1.31
66781--66891
24
4.6
25
70
23
94
60
14
0
25
1.34
66707--66905
72
2.8
73
90
7
297
60
12
0
26
1.36
66806--66865
28
2.1
29
84
9
79
65
13
0
21
1.27

Tables:   1

The End!