genome.fa.s6639.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006639.1 Hibiscus syriacus cultivar Beakdansim tig00016352_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117367

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10710--10743	5	6.8	5	100	0	68	38	41	0	20	1.53
11299--11330	16	2.1	15	94	5	55	37	0	0	62	0.95
13577--13678	29	3.5	29	83	4	107	19	14	6	58	1.58
13608--13689	29	2.8	29	85	7	78	21	12	4	60	1.50
13656--13721	31	2.2	30	83	8	80	18	6	7	68	1.35
14009--14048	21	1.9	21	89	0	62	15	5	2	77	1.04
14007--14048	11	3.9	11	81	6	50	16	4	2	76	1.07
14015--14056	21	2.0	21	81	9	50	14	7	4	73	1.21
17007--17035	3	9.7	3	100	0	58	34	0	0	65	0.93
19140--19221	28	2.9	28	80	10	105	25	13	13	47	1.79
19231--19708	131	3.6	131	82	3	530	27	33	15	23	1.95
19637--19743	40	2.6	40	76	10	108	26	33	16	23	1.96
19924--19970	3	15.7	3	95	0	85	2	0	29	68	1.02
21264--21337	28	2.5	30	87	8	100	22	14	4	58	1.54
30311--30949	139	4.6	139	88	1	913	24	19	17	37	1.94
31340--31840	239	2.1	243	87	3	719	34	16	17	32	1.92
31888--32493	55	11.2	53	81	5	349	42	16	9	31	1.80
32100--32776	55	12.6	55	78	9	655	43	15	7	33	1.76
32481--32527	22	2.4	19	86	13	60	53	10	10	25	1.68
32368--32647	152	1.8	151	84	3	382	45	13	8	32	1.74
32510--32776	54	4.9	55	82	3	308	44	15	6	33	1.72
32510--32776	107	2.5	109	80	5	317	44	15	6	33	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32948--32979	2	16.0	2	100	0	64	0	0	50	50	1.00
35058--35264	65	3.2	63	76	10	204	26	18	24	30	1.98
35562--35592	12	2.6	12	100	0	62	41	6	9	41	1.63
35733--35758	2	13.0	2	100	0	52	50	0	0	50	1.00
43753--43962	65	3.2	64	77	9	212	26	18	24	30	1.97
45256--45396	73	1.9	72	92	4	239	41	13	10	34	1.79
45870--45926	23	2.4	24	80	16	66	10	10	3	75	1.16
45875--45924	23	2.2	23	86	10	68	8	10	4	78	1.09
45942--45980	21	2.0	21	90	10	64	10	28	12	48	1.74
45960--46005	24	1.9	24	86	0	65	6	26	21	45	1.76
47760--47798	21	1.9	20	94	5	69	25	0	2	71	0.98
47823--47985	39	4.3	38	81	11	119	43	0	0	55	1.04
47884--47953	22	3.4	22	81	18	105	40	0	0	60	0.97
47878--47967	39	2.3	38	98	1	171	42	0	0	57	0.98
47812--47944	68	2.0	68	85	8	182	44	0	0	54	1.05
47878--47995	38	3.1	38	72	19	102	44	0	0	55	0.99
48063--48111	19	2.5	20	81	15	59	61	2	0	36	1.08
55725--55841	56	2.1	55	85	1	153	31	19	28	20	1.97
56097--56195	36	2.8	36	84	6	123	18	18	18	45	1.86
58288--58313	3	8.7	3	100	0	52	0	34	0	65	0.93
60532--60687	61	2.5	61	81	6	161	30	15	24	29	1.95
63456--63511	20	2.7	21	75	2	69	33	21	12	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63591--63645	20	2.8	20	88	0	74	27	16	25	30	1.96
66133--66179	14	3.4	14	100	0	94	53	6	0	40	1.27
69423--69494	3	24.0	3	97	0	135	66	0	1	31	1.00
72805--72883	3	25.7	3	84	5	86	58	0	0	41	0.98
72833--72882	18	2.8	18	100	0	100	58	0	0	42	0.98
73115--73897	113	7.0	113	94	1	1281	29	18	15	36	1.92
74820--75205	83	4.7	83	94	0	664	38	21	12	27	1.89
76352--76413	1	62.0	1	73	0	52	0	12	0	87	0.55
76362--76418	8	7.2	8	84	9	73	0	15	0	84	0.63
76352--76415	10	6.8	10	85	12	75	0	14	0	85	0.59
76359--76418	15	4.0	15	82	10	70	0	15	0	85	0.61
76352--76418	23	3.0	23	85	10	93	0	14	0	85	0.61
83745--83776	15	2.1	15	94	0	55	46	9	18	25	1.79
89220--89282	3	20.7	3	80	9	74	60	0	0	39	0.97
89231--89289	9	6.5	10	79	16	67	62	0	0	37	0.95
91601--91640	21	2.0	21	90	5	64	7	17	50	25	1.72
93554--93610	25	2.3	25	78	6	62	22	12	17	47	1.81
102393--102426	15	2.3	15	94	0	59	38	32	14	14	1.87
102538--102606	24	2.8	26	83	12	85	31	24	5	37	1.79
102571--102606	12	3.0	12	91	0	63	36	25	5	33	1.79
109240--109273	15	2.3	15	94	0	59	35	29	17	17	1.93
109344--109412	24	2.8	26	83	12	85	31	23	5	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109377--109412	12	3.0	12	87	0	54	36	22	5	36	1.78
115021--115065	20	2.2	20	84	7	56	28	24	31	15	1.96
116677--116727	18	2.7	18	74	20	50	58	1	25	13	1.46

Tables:   1

The End!