genome.fa.s664.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000664.1 Hibiscus syriacus cultivar Beakdansim tig00001293_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78286

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6866--6908	15	2.9	15	86	6	61	34	2	0	62	1.08
6867--6914	14	3.4	14	80	13	53	31	2	0	66	1.03
7079--7165	43	2.0	44	93	2	149	26	22	22	27	2.00
10621--10658	20	1.9	20	100	0	76	15	10	10	63	1.52
13904--14046	74	1.9	74	91	0	232	43	13	11	30	1.81
15207--15299	29	3.1	29	67	11	80	33	8	16	41	1.78
22589--22976	184	2.1	184	91	2	638	45	8	2	42	1.49
28424--28491	29	2.3	29	80	9	77	23	0	7	69	1.14
28418--28496	30	2.5	30	84	12	97	22	0	6	70	1.09
28479--28507	13	2.3	13	94	5	51	24	0	0	75	0.80
28419--28512	38	2.6	36	77	14	102	25	0	5	69	1.10
28749--28805	29	2.0	29	86	3	80	12	7	12	68	1.39
28810--28840	11	2.8	11	100	0	62	25	9	0	64	1.24
40259--40824	105	5.5	105	92	3	900	33	24	18	23	1.97
40259--40824	204	2.7	207	90	5	867	33	24	18	23	1.97
40672--40992	164	1.9	168	83	7	420	33	26	18	22	1.96
40834--41091	99	2.6	99	91	0	419	34	26	18	20	1.96
40567--41309	263	2.7	266	86	7	987	32	25	18	22	1.97
40933--41289	171	2.1	168	88	5	539	33	26	19	21	1.97
41032--41190	65	2.5	65	85	6	200	33	26	19	20	1.96
41105--41309	106	1.9	106	92	2	340	32	25	19	22	1.97
42977--43005	13	2.3	13	94	5	51	24	0	0	75	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43307--43336	11	2.7	11	100	0	60	23	10	0	66	1.21
47243--47296	26	2.1	26	82	3	65	46	7	14	31	1.73
48077--48106	4	7.5	4	100	0	60	23	0	0	76	0.78
55751--55842	12	7.8	12	73	16	66	18	15	18	47	1.82
55737--55844	47	2.3	48	81	12	125	19	15	16	48	1.82
55737--55846	24	4.6	24	75	10	102	20	15	16	48	1.82
63987--64208	111	2.0	111	96	1	410	34	18	14	31	1.92
72479--72537	25	2.4	25	97	0	109	22	10	15	52	1.72
75596--75623	4	7.0	4	100	0	56	75	0	0	25	0.81

Tables:   1

The End!