genome.fa.s6641.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006641.1 Hibiscus syriacus cultivar Beakdansim tig00016354_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78101

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
484--569	35	2.5	35	84	0	109	34	16	16	32	1.91
5174--5261	35	2.5	35	81	1	95	34	17	17	31	1.93
7170--7219	11	4.6	11	76	14	59	22	18	34	26	1.96
15589--16010	55	7.7	55	88	1	569	34	13	18	34	1.90
15589--16062	110	4.3	110	84	2	368	34	13	18	33	1.89
19456--19542	29	3.0	29	94	0	156	22	41	21	13	1.89
20322--20535	44	4.8	44	86	3	295	19	26	22	31	1.98
26961--27015	21	2.6	21	94	0	83	45	10	14	29	1.79
37486--37526	21	2.1	19	86	9	55	24	19	24	31	1.98
42727--42764	20	2.0	19	85	10	51	26	23	18	31	1.97
48075--48114	21	1.9	21	94	0	71	47	5	15	32	1.66
51002--51055	25	2.2	25	86	3	74	42	5	7	44	1.55
53008--53041	2	17.0	2	100	0	68	50	0	0	50	1.00
53692--53733	21	2.0	22	85	4	59	50	2	0	47	1.14
53925--53977	20	2.7	20	85	5	72	45	24	16	13	1.83
53925--54156	81	2.9	80	83	3	225	38	24	17	19	1.93
53986--54158	20	8.6	20	76	4	168	37	24	17	20	1.94
53986--54156	40	4.2	41	88	1	238	38	23	17	20	1.93
54718--54758	20	2.0	20	95	0	73	56	17	14	12	1.68
54795--54839	19	2.4	19	92	0	72	46	26	17	8	1.78
54835--54966	19	7.1	19	77	11	139	12	21	19	46	1.82
54909--54966	20	2.9	21	79	7	66	12	24	17	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56946--57012	21	3.2	21	68	6	55	23	34	20	20	1.97
58338--58370	14	2.4	14	94	0	57	33	0	21	45	1.52
58477--58568	19	5.4	17	68	24	61	48	20	17	13	1.80
58477--58570	33	2.8	32	87	3	125	47	21	18	12	1.81
58540--58580	19	2.2	19	95	0	73	51	21	14	12	1.75
58651--58758	20	5.8	19	72	13	82	16	22	21	39	1.92
58586--58758	72	2.5	71	86	7	230	15	23	19	41	1.89
58586--58731	33	4.2	33	85	10	211	13	23	19	43	1.87
62175--62434	20	12.9	19	73	12	139	20	18	23	37	1.94
62183--62351	60	2.8	59	84	5	214	20	17	23	38	1.93
62181--62411	40	5.7	41	84	5	213	19	18	23	38	1.93
62420--62472	20	2.7	20	85	5	72	13	16	24	45	1.83
62522--62575	20	2.7	19	69	8	54	16	16	31	35	1.92
63526--63556	13	2.4	13	100	0	62	6	29	16	48	1.70
64581--64800	45	4.9	45	93	3	372	31	20	7	40	1.80
64882--64962	40	2.0	40	82	0	99	24	23	24	27	2.00
74177--74279	46	2.3	46	91	1	163	32	9	17	40	1.82
74494--74997	58	8.8	58	81	5	438	37	8	11	43	1.71
74494--74994	115	4.4	115	82	7	495	37	7	11	42	1.71
75153--75251	37	2.6	38	78	12	96	36	6	13	44	1.68

Tables:   1

The End!