Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01006642.1 Hibiscus syriacus cultivar Beakdansim tig00016355_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46266
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Found at i:9 original size:4 final size:4
Alignment explanation
Indices: 1--5392 Score: 8477
Period size: 4 Copynumber: 1386.5 Consensus size: 4
1 ATAC ATAC ATA- ATAC -TAC ATAC ATTAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC A-TAC ATAC ATAC ATAC ATAC ATAC
*
48 ATAC ATAC ATAC --AC ATAC ATAC ATAC CTAC ATAC AT-- ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
92 ATAC ATAC ATAC ATAC -TAC -TAC ATAC -TAC ATAC AGAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
137 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA- ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
184 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
232 ATAC ATAC ATAC ATAC ATAC ATTAC AT-C ATAC ATAC ATAC ATAC --AC
1 ATAC ATAC ATAC ATAC ATAC A-TAC ATAC ATAC ATAC ATAC ATAC ATAC
278 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATTAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-TAC ATAC ATAC ATAC
327 ATAC ATAC A-AC ATAC ATAC ATAC -TAC ATAC --AC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
371 ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
418 ATAC ATAC ATAC ATAC AATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
466 AT-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TCC ATAC ATAC ATCC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
512 ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC AT-C ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
558 ATAC ATAC ATAC ATAC A-AC ATTAC ATAC ATCC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC A-TAC ATAC ATAC ATAC ATAC ATAC ATAC
606 ATAC ATAC ATAC ATAC ATAC ATA- ATAC ATAC ATACC ATAC --AC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA-C ATAC ATAC ATAC
*
652 ATAC ATAC ATAC ATAC -CAC ATATC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATA-C ATAC ATAC ATAC ATAC ATAC ATAC
* * *
700 ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAT ACAT ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
746 ATAC ATAC ATAC ATAC ATAC ATAC ATTAC ATAC AT-- ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC A-TAC ATAC ATAC ATAC ATAC ATAC
793 ATAC ATAC A-AC ATAC AT-- ATAC ATAC ATAC ATAC ATAC -TAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
837 ATAC AGAC ATAC ATAC A-AC ATAC ATAC ATAC ATAC ATAC -TAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
883 ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-CC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
930 -CAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
975 ATAC ATAC ATATC ATAC ATA- A-AC ATAC ATAC ATAC ATAC --AC ATAC
1 ATAC ATAC ATA-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1020 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1066 ATAC ATTAC ATAC ATAC ATAC ATTAC ATAC ATAC ATAC --AC ATAC ATAC
1 ATAC A-TAC ATAC ATAC ATAC A-TAC ATAC ATAC ATAC ATAC ATAC ATAC
1114 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
1162 ATAC -TAC -TAC ATAT ATAC ATA- ATAC ATAC ATAC ATAC -TAC AATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -ATAC
1207 ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1253 ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
1299 ATAC ATAC ATAC ATAC -TAC ATAA ATAC CTAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
1346 ATAC ATAC ATAC AT-- ATAC ATAC ATAC ATAC ATAC ATAC CTAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1392 ATAC ATAC ATAC ATAC ATAC ATAC ATAC AATAC ATAC ATAC ATAC A-AC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC ATAC
1440 -TAC ATAC ATAC ATAC ATACC ATAC ATAC ATAC ATAC AT-- ATAC ATAC
1 ATAC ATAC ATAC ATAC ATA-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1486 ATAC ATAC ATAC ATACC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATA-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1535 -TATC ATAC ATAC ATAC AT-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATA-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1582 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1630 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
1678 ATAC ATAC CTAC ATAC ATAC ATAC ATAC ATACC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA-C ATAC ATAC ATAC ATAC
1727 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-AC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1774 ATTAC ATAC ATAC ATAC ATAC ATAC ATA- ATA- ATAC ATAC ATAC ATAC
1 A-TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1821 ATAC ATAC -TAC ATAC ATAC ATAC AT-C ATAC ATAC ATAC ATAC -TAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
1866 CTAC ATAC ATAC ATAC ATA- ATAC TAGAC ATAC AT-C ATAC ATAC ATAAC
1 ATAC ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC ATAC AT-AC
1914 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
1960 ATAC ATAC ATAC CTAC -TAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
2006 ATCAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 AT-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
2055 ATAC ATAAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC AT-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
2104 CTAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
2150 ATAC CTAC ATAC ATAC ATAC ATAC ATAC ATAC AGATAC ATAC ATAA ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --ATAC ATAC ATAC ATAC
*
2200 ATAC ATAC ATAC ATAC ATAC ATAC A-AC ATA- ATAC ATAC ATAC ATCC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
2246 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC ATCC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
2293 A-AC ATAC ATAC AT-- ATAC ATAC A-AC ATAC ATAC ATAC ATA- ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
2336 ATAC ATAC ATAC ATAC ATAC ATAC ATAC TTAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
2384 ATAC ATAC ATAC ATAC ATACC ATAC --AC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATA-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC
2431 ATAC ATAC --AC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC A-AC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
2475 ATAC ATAC ATAC ATAC ATAC ATAC AT-- ATAC ATAC ATAC -TAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
2520 ATAC -TAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATA- ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
2565 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
2613 ATAC CTAC ATAC ATAC A-AC ATAC ATAC ATAC ATAC --AC ATTAC ATA-
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-TAC ATAC
2658 ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
2704 ATAC ATAC ATAC ATAC --AC ATAC AGAC ATAC ATAC ATAC ATAC -TAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
2749 ATAC ATAC ATAC CTAC ATAC ATAC ATAC AT-C ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
2796 ATAC ATAC AGAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
2842 AT-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-AC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
2888 ATAC ATAC ATAC AT-- ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
2934 ATAC -TAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
2979 ATAC CTAC ATAC ATAC ATAC AATAAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC -AT-AC ATAC ATAC ATAC ATAC ATAC ATAC
* *
3029 ATAC ATAC -TAC ATAC ATCC ATAC ATAC ATAC ATAC ATAA ACTAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-TAC ATAC
*
3077 ATCC ATAC -TAC AT-C ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3123 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-C ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
3170 ATAC AGAC ATAC ATAC ATAC AT-- ATAC ATAC ATAC AT-C ATAC AT--
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3213 ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
3259 ATAC ATAC CTAC ATTAC AATTAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC A-TAC -A-TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3309 ATAC ATAC ATAC ATAC ATA- ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3356 ATAC A-AC ATA- A-AC ATAC ATAC ATAC -TAC ATAC -TAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3399 A-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3446 -TAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
3491 ATAC ATAC CTAC AT-C ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
3536 ATAC ATAC ATAC ATAC CTAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3584 ATAC ATAC ATAC ATAC ATTAC ATAC ATAC ATAC ATAC ATAC AT-- ATAC
1 ATAC ATAC ATAC ATAC A-TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3631 ATAC ATAC ATAC ATAAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC AT-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3680 ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC ATACC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA-C
3726 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -TAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3773 ATAC ATAC ATAC ATAC AT-- ATAC ATAC AT-- ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3817 A-AC ATAC AT-C ATAC ATAC ATAC ATAC ATAC ATAC ATCAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-AC ATAC ATAC
3864 ATAC ATAC ATAC ATA- ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
3911 ATAC ATAC ATAC ATAC ATAC AT-C CTAC ATAC AT-C ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
3957 ATAC ATAC ATAC A-AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
4004 -TAC ATAC ATAC ATAC ATAC TACAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
4052 ATAC ATCC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
4098 ATAC ATAC ATAC ATAC ATAC A-AC ATAC ATAC ATAC ATAC CTAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
4145 ATAC ATAC ATAC ATAC ATAC AATAC ATAC ATA- ATAC AT-C ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATAC
4192 ATAC AATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-C ATAC --AC ATAC
1 ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
4238 ATAC A-AC ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC -TAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
4283 ATAC ATAC ATAC ATAC ATAC CTAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
4331 ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
4377 ATAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
4424 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
4472 AATAC ATAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC AGAC
1 -ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
4520 ATAC ATAC ATAC ATAC ATAC ATCC ATCAC ATAC -TAC ATAC -TAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC AT-AC ATAC ATAC ATAC ATAC ATAC
4567 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
4615 AT-C ATAC AT-- ATAC ATAC ATAC AATAC ATAC ATAC AT-C CTAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC ATAC ATAC
4660 ATAC ATAC ATAC ATAC ATAC AT-C ATAC ATAC ATACC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA-C ATAC ATAC ATAC
4708 ATAC ATAC ATAC ATAC ATAC ATAC ATAC A-AC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
4755 ATAC CTAC ATAC ATAC ATAC ATAC ATAC A-AC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
4802 -TAC ATAC ATAC ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
4847 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
4895 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
4943 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
4991 ATAC ATAC ATAC ATAC ATAC ATAC ATAA ATAC ATAC -TAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
5038 ATAC ATAC ATACC TATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATA-C -ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
5087 -TAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC CTAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
5134 ATAC ATAC CTAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
5180 ATAC ATAC ATAC ACAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
5227 A-AC ATAC ATAC ATAC ATAC ATAC AT-- ATAC ATAC AGAC ATAC -TAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
5271 ATAC ATAC TATAC ATAC ATAC ATAC ATAC -TAC ATAC ATAC ATAC -TAC
1 ATAC ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
5318 ATAC ATAC ATAC ATCC ATAC AATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATAC
5367 ATAC ATAC ATAC ATAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC AT
5393 CAAACATTTA
Statistics
Matches: 5043, Mismatches: 101, Indels: 488
0.90 0.02 0.09
Matches are distributed among these distances:
2 88 0.02
3 327 0.06
4 4463 0.88
5 151 0.03
6 14 0.00
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:5835 original size:101 final size:101
Alignment explanation
Indices: 5719--6041 Score: 257
Period size: 101 Copynumber: 3.3 Consensus size: 101
5709 GAGAATTTTA
* * *
5719 AAACAAATTTCATCTCATTTAAGA-TAATTTCTCTT-AAAACAAACTTCGTCTCGCTTGAGACAT
1 AAACAAAATTAATCTCACTTAAGATTAATTTCT-TTCAAAAC-AACTTCGTCTCGCTTGAGAC-T
**
5782 TTTT-CTTTGAGATACGA-ATTTTGAATTTGATTCACTTG
63 TTTTCCTTTGAGATAC-ATATTTCAAATTTGATTCACTTG
* * *
5820 AAACAAAATTAATCTCACTTGAGATTGTTATTTCTTTCAAAACAATTTCGTCTCGCTTGAGACTT
1 AAACAAAATTAATCTCACTTAAGA-T-TAATTTCTTTCAAAACAACTTCGTCTCGCTTGAGACTT
* *
5885 TTTCCTTTGATATACATATTTCAAATTTGCTTCACTTG
64 TTTCCTTTGAGATACATATTTCAAATTTGATTCACTTG
* ** * * *
5923 -AA-AAAATTAATCTCAC-TGAGATTGTTGTTTATTTCAAAACAAATTTCGTCTCACTTGAGA-T
1 AAACAAAATTAATCTCACTTAAGA-T-TAATTTCTTTCAAAAC-AACTTCGTCTCGCTTGAGACT
* * *
5984 ATTTTCC-CTCAG--A-ATA---CAAATTT-ATTTTACTTG
63 -TTTTCCTTTGAGATACATATTTCAAATTTGA-TTCACTTG
6017 AAACAAAATTAATCTCACTT-AGATT
1 AAACAAAATTAATCTCACTTAAGATT
6042 TTCAAAAACT
Statistics
Matches: 192, Mismatches: 18, Indels: 31
0.80 0.07 0.13
Matches are distributed among these distances:
94 15 0.08
95 3 0.02
96 17 0.09
97 4 0.02
98 1 0.01
100 25 0.13
101 58 0.30
102 8 0.04
103 49 0.26
104 12 0.06
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.41
Consensus pattern (101 bp):
AAACAAAATTAATCTCACTTAAGATTAATTTCTTTCAAAACAACTTCGTCTCGCTTGAGACTTTT
TCCTTTGAGATACATATTTCAAATTTGATTCACTTG
Found at i:5877 original size:103 final size:102
Alignment explanation
Indices: 5745--5988 Score: 327
Period size: 103 Copynumber: 2.4 Consensus size: 102
5735 ATTTAAGATA
* **
5745 ATTTCTCTT-AAAACAAACTTCGTCTCGCTTGAGACATTTTT-CTTTGAGATACGA-ATTTTGAA
1 ATTTCT-TTCAAAACAAATTTCGTCTCGCTTGAGACATTTTTCCTTTGAGATAC-ATATTTCAAA
5807 TTTGATTCACTTGAAACAAAATTAATCTCACTTGAGATTGTT
64 TTTGATTCACTTG-AA-AAAATTAATCTCAC-TGAGATTGTT
*
5849 ATTTCTTTCAAAAC-AATTTCGTCTCGCTTGAGAC-TTTTTCCTTTGATATACATATTTCAAATT
1 ATTTCTTTCAAAACAAATTTCGTCTCGCTTGAGACATTTTTCCTTTGAGATACATATTTCAAATT
*
5912 TGCTTCACTTGAAAAAATTAATCTCACTGAGATTGTT
66 TGATTCACTTGAAAAAATTAATCTCACTGAGATTGTT
* * * *
5949 GTTTATTTCAAAACAAATTTCGTCTCACTTGAGATATTTT
1 ATTTCTTTCAAAACAAATTTCGTCTCGCTTGAGACATTTT
5989 CCCTCAGAAT
Statistics
Matches: 126, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
100 22 0.17
101 32 0.25
102 12 0.10
103 49 0.39
104 11 0.09
ACGTcount: A:0.30, C:0.17, G:0.11, T:0.42
Consensus pattern (102 bp):
ATTTCTTTCAAAACAAATTTCGTCTCGCTTGAGACATTTTTCCTTTGAGATACATATTTCAAATT
TGATTCACTTGAAAAAATTAATCTCACTGAGATTGTT
Found at i:7637 original size:13 final size:13
Alignment explanation
Indices: 7615--7648 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
7605 TATGTAATTC
* *
7615 TGTGGAACATATG
1 TGTGGTACATATA
7628 TGTGGTACATATA
1 TGTGGTACATATA
7641 TGTGGTAC
1 TGTGGTAC
7649 TTCGGTACAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.26, C:0.09, G:0.29, T:0.35
Consensus pattern (13 bp):
TGTGGTACATATA
Found at i:8038 original size:13 final size:12
Alignment explanation
Indices: 7999--8040 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
7989 TATGCGTGCA
7999 TGTATAT-AATT
1 TGTATATGAATT
*
8010 TGTTATATGAACT
1 TG-TATATGAATT
8023 TGTATATGATATT
1 TGTATATGA-ATT
8036 TGTAT
1 TGTAT
8041 TATATTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
11 2 0.08
12 12 0.46
13 12 0.46
ACGTcount: A:0.31, C:0.02, G:0.14, T:0.52
Consensus pattern (12 bp):
TGTATATGAATT
Found at i:8767 original size:27 final size:27
Alignment explanation
Indices: 8711--8767 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
8701 GTTGTCTCTC
* *
8711 TTGAGACGTTTCTATTAAAAACAACCT
1 TTGAGACGTTTCCATTAAAAACAAACT
* *
8738 TTGAGATCGTTTCCATT-GAAACAAATT
1 TTGAGA-CGTTTCCATTAAAAACAAACT
8765 TTG
1 TTG
8768 TCTGCCTTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
27 16 0.64
28 9 0.36
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (27 bp):
TTGAGACGTTTCCATTAAAAACAAACT
Found at i:8817 original size:31 final size:31
Alignment explanation
Indices: 8782--8860 Score: 83
Period size: 31 Copynumber: 2.5 Consensus size: 31
8772 CCTTGAGGCA
* *
8782 GTTTCTTTGGAAACACAAA-ATCTTTGAGTCT
1 GTTTCTCTAGAAACA-AAACATCTTTGAGTCT
8813 GTTTCTCTAGAAACAAAACCATCTTTGAGTCAT
1 GTTTCTCTAGAAACAAAA-CATCTTTGAGTC-T
*
8846 -TTTC-CTTGAAACAAA
1 GTTTCTCTAGAAACAAA
8861 TTTTGTCTCT
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
30 3 0.07
31 23 0.55
32 15 0.36
33 1 0.02
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (31 bp):
GTTTCTCTAGAAACAAAACATCTTTGAGTCT
Found at i:8842 original size:32 final size:31
Alignment explanation
Indices: 8801--8860 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 31
8791 GAAACACAAA
8801 ATCTTTGAGTC-TGTTTCTCTAGAAACAAAACC
1 ATCTTTGAGTCAT-TTTC-CTAGAAACAAAACC
*
8833 ATCTTTGAGTCATTTTCCTTGAAACAAA
1 ATCTTTGAGTCATTTTCCTAGAAACAAA
8861 TTTTGTCTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 10 0.38
32 15 0.58
33 1 0.04
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (31 bp):
ATCTTTGAGTCATTTTCCTAGAAACAAAACC
Found at i:8956 original size:28 final size:29
Alignment explanation
Indices: 8897--8963 Score: 109
Period size: 28 Copynumber: 2.3 Consensus size: 29
8887 TCGAAGCATC
* *
8897 ATCTTTGAGTTTTTTTTTTCTTGAAACAA
1 ATCTTTGAGTTTGTTTCTTCTTGAAACAA
8926 ATCTTTGAGTTTGTTTCTT-TTGAAACAA
1 ATCTTTGAGTTTGTTTCTTCTTGAAACAA
8954 ATCTTTGAGT
1 ATCTTTGAGT
8964 CGGTTACCCT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
28 19 0.53
29 17 0.47
ACGTcount: A:0.24, C:0.10, G:0.13, T:0.52
Consensus pattern (29 bp):
ATCTTTGAGTTTGTTTCTTCTTGAAACAA
Found at i:8976 original size:28 final size:28
Alignment explanation
Indices: 8916--8979 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 28
8906 TTTTTTTTTT
** * *
8916 CTTGAAACAAATCTTTGAGTTTGTTTCT
1 CTTGAAACAAATCTTTGAGTCGGTTACC
*
8944 TTTGAAACAAATCTTTGAGTCGGTTACC
1 CTTGAAACAAATCTTTGAGTCGGTTACC
8972 CTTGAAAC
1 CTTGAAAC
8980 CAAAATCCCT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (28 bp):
CTTGAAACAAATCTTTGAGTCGGTTACC
Found at i:10902 original size:29 final size:30
Alignment explanation
Indices: 10860--10932 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 30
10850 TTAGACCCTT
* *
10860 TAAGATTTTATTTTTACTATTGTAG-TCCC
1 TAAGTTTTTGTTTTTACTATTGTAGTTCCC
* * **
10889 TAAGTTTTTGTTTTTGCTATTTTAGTTCTT
1 TAAGTTTTTGTTTTTACTATTGTAGTTCCC
*
10919 TAAGTTTCTGTTTT
1 TAAGTTTTTGTTTT
10933 ATCCATTTTG
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
29 21 0.58
30 15 0.42
ACGTcount: A:0.18, C:0.10, G:0.12, T:0.60
Consensus pattern (30 bp):
TAAGTTTTTGTTTTTACTATTGTAGTTCCC
Found at i:10925 original size:30 final size:30
Alignment explanation
Indices: 10905--11033 Score: 109
Period size: 30 Copynumber: 4.3 Consensus size: 30
10895 TTTGTTTTTG
*
10905 CTATTTTAGTTCTTTAAGTTTCTGTTTTAT
1 CTATTTTAGTTCTTTAAGTTTCTATTTTAT
* * * *
10935 CCATTTTGGTTCCTGAAGTTTCTATTTTAT
1 CTATTTTAGTTCTTTAAGTTTCTATTTTAT
* * * *
10965 CTATTTTGGTCCGTGAAGTTTCTATTTTAT
1 CTATTTTAGTTCTTTAAGTTTCTATTTTAT
* * * *
10995 GTATTTTAG-ACTCTTAAGTTTTTGTTATTA-
1 CTATTTTAGTTCT-TTAAGTTTCTATT-TTAT
11025 CTATTTTAG
1 CTATTTTAG
11034 CCATTTAGGT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
29 1 0.01
30 77 0.95
31 3 0.04
ACGTcount: A:0.19, C:0.12, G:0.13, T:0.57
Consensus pattern (30 bp):
CTATTTTAGTTCTTTAAGTTTCTATTTTAT
Found at i:15841 original size:29 final size:29
Alignment explanation
Indices: 15809--15868 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
15799 TGGTAATAAT
* * *
15809 AAATTAAAGGGCTAAAACAGAAAAATAGA
1 AAATTAAAAGACTAAAACAGAAAAACAGA
* *
15838 AAATTAAAAGACTAAAATAGCAAAACAGA
1 AAATTAAAAGACTAAAACAGAAAAACAGA
15867 AA
1 AA
15869 TGTAGGGACT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.65, C:0.08, G:0.13, T:0.13
Consensus pattern (29 bp):
AAATTAAAAGACTAAAACAGAAAAACAGA
Found at i:17120 original size:17 final size:17
Alignment explanation
Indices: 17083--17133 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 17
17073 GGCTTCGCCC
* **
17083 TTTTCTTTCTCTCTTAG
1 TTTTCTTTCTTTCTTTT
17100 TTTTCTTTCTTTCTTTT
1 TTTTCTTTCTTTCTTTT
17117 TTTT-TTT-TTT-TTTT
1 TTTTCTTTCTTTCTTTT
17131 TTT
1 TTT
17134 CAAAACCGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
14 7 0.23
15 3 0.10
16 3 0.10
17 18 0.58
ACGTcount: A:0.02, C:0.14, G:0.02, T:0.82
Consensus pattern (17 bp):
TTTTCTTTCTTTCTTTT
Found at i:17572 original size:11 final size:11
Alignment explanation
Indices: 17558--17599 Score: 77
Period size: 11 Copynumber: 3.9 Consensus size: 11
17548 GGGCTCGTGT
17558 TTGGGCCTTGG
1 TTGGGCCTTGG
17569 TTGGGCCTTGG
1 TTGGGCCTTGG
17580 TTGGGCCTT-G
1 TTGGGCCTTGG
17590 TTGGGCCTTG
1 TTGGGCCTTG
17600 TTGTATTGGG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
10 10 0.33
11 20 0.67
ACGTcount: A:0.00, C:0.19, G:0.43, T:0.38
Consensus pattern (11 bp):
TTGGGCCTTGG
Found at i:17594 original size:10 final size:10
Alignment explanation
Indices: 17543--17602 Score: 75
Period size: 11 Copynumber: 5.6 Consensus size: 10
17533 ACCCTAATTT
17543 TTGTTGGGCTC
1 TTGTTGGGC-C
*
17554 GTGTTTGGGCC
1 TTG-TTGGGCC
17565 TTGGTTGGGCC
1 TT-GTTGGGCC
17576 TTGGTTGGGCC
1 TT-GTTGGGCC
17587 TTGTTGGGCC
1 TTGTTGGGCC
17597 TTGTTG
1 TTGTTG
17603 TATTGGGCTT
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
10 14 0.31
11 24 0.53
12 7 0.16
ACGTcount: A:0.00, C:0.17, G:0.42, T:0.42
Consensus pattern (10 bp):
TTGTTGGGCC
Found at i:17654 original size:3 final size:3
Alignment explanation
Indices: 17642--17680 Score: 62
Period size: 3 Copynumber: 13.0 Consensus size: 3
17632 AATATGTAAT
17642 TAA T-A TAA TAA TAA TAA TAAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA
17681 CAAAATTAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 2 0.06
3 29 0.85
4 3 0.09
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:17665 original size:16 final size:16
Alignment explanation
Indices: 17646--17677 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
17636 TGTAATTAAT
17646 ATAATAATAATAATAA
1 ATAATAATAATAATAA
17662 ATAATAATAATAATAA
1 ATAATAATAATAATAA
17678 TAACAAAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
ATAATAATAATAATAA
Found at i:17954 original size:40 final size:41
Alignment explanation
Indices: 17864--18353 Score: 275
Period size: 40 Copynumber: 11.6 Consensus size: 41
17854 GACGCCACTA
* * *
17864 CTCATACGTGATGAAGAG-TTTGGTTATCTA-TGGTTGACACGG
1 CTCATACGTGATGAAGAGATCTGG--ATC-AGGGGATGACACGG
*
17906 CTCCTACGTGATGAAGAGATCTGG-TC-GGGGAATGACACGG
1 CTCATACGTGATGAAGAGATCTGGATCAGGGG-ATGACACGG
* * *
17946 CTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACACGG
1 CTCATACGTGATGAAGAGATCTGG--ATC---AGGGGATGACACGG
* * * *
17992 TTCCTACGTGATGAGGACG-GCTGGTTATCTA-GGG-TGACACGG
1 CTCATACGTGATGAAGA-GATCTGG--ATC-AGGGGATGACACGG
*
18034 CTCATACGTGATGAAGAGATCT-GTTC-GGGGTATGACACGG
1 CTCATACGTGATGAAGAGATCTGGATCAGGGG-ATGACACGG
* *
18074 CTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGAT-AGCACGG
1 CTCATACGTGATGAAGAGATCTGG--ATC---AGGGGATGA-CACGG
* * * *
18120 TTCCTACGTGATGAGGACG-GCTGGTTATCTA-GGG-TGACACGG
1 CTCATACGTGATGAAGA-GATCTGG--ATC-AGGGGATGACACGG
*
18162 CTCATACGTGATGAAGAGATCT-GTTC-GGGGTATGACACGG
1 CTCATACGTGATGAAGAGATCTGGATCAGGGG-ATGACACGG
* *
18202 CTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGAT-AGCACGG
1 CTCATACGTGATGAAGAGATCTGG--ATC---AGGGGATGA-CACGG
* * * *
18248 TTCCTACGTGATGAGGACG-GCTGGTTATCTA-GGG-TGACACGG
1 CTCATACGTGATGAAGA-GATCTGG--ATC-AGGGGATGACACGG
18290 CTCATACGTGATGAAGAGATCTGG-TC-GGGGTATGACACGG
1 CTCATACGTGATGAAGAGATCTGGATCAGGGG-ATGACACGG
*
18330 CTCATACGTGATGAAGAGTTCTGG
1 CTCATACGTGATGAAGAGATCTGG
18354 CCATCTAAAG
Statistics
Matches: 351, Mismatches: 54, Indels: 88
0.71 0.11 0.18
Matches are distributed among these distances:
38 9 0.03
39 8 0.02
40 121 0.34
41 7 0.02
42 86 0.25
43 18 0.05
44 3 0.01
45 2 0.01
46 85 0.24
47 12 0.03
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.25
Consensus pattern (41 bp):
CTCATACGTGATGAAGAGATCTGGATCAGGGGATGACACGG
Found at i:18049 original size:88 final size:88
Alignment explanation
Indices: 17900--18313 Score: 312
Period size: 88 Copynumber: 4.8 Consensus size: 88
17890 TCTATGGTTG
* * *
17900 ACACGGCTCCTACGTGATGAAGAGATCTGG---TC-GGGGAATGACACGGCTCATACGTGATGAA
1 ACACGGCTCATACGTGATGAAGAGAGCTGGTTATCTAGGG--TGACACGGCTCATACGTGATGAA
*
17961 GAGTTCTGGCCATCTAAAGGTGATA
64 GAGATCTGGCCATCTAAAGGTGATA
* * *
17986 ACACGGTTCCTACGTGATGAGGACG-GCTGGTTATCTAGGGTGACACGGCTCATACGTGATGAAG
1 ACACGGCTCATACGTGATGAAGA-GAGCTGGTTATCTAGGGTGACACGGCTCATACGTGATGAAG
*** *
18050 AGATCT-G---T-TCGGGGT-ATG
65 AGATCTGGCCATCTAAAGGTGATA
** ** * * *
18068 ACACGGCTCATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAGCACGGTTCCTACGTGATG
1 ACACGGCTCATACGTGATGAAGAGAGCTGGTTATCT-AGGGTG--A-CACGGCTCATACGTGATG
* * ** *
18133 AGGACG-GCTGGTTATCT--AGG-G-TG
62 AAGA-GATCTGGCCATCTAAAGGTGATA
* *
18156 ACACGGCTCATACGTGATGAAGAGATCT-G-T-TC-GGGGTATGACACGGCTCATACGTGATGAA
1 ACACGGCTCATACGTGATGAAGAGAGCTGGTTATCTAGGG--TGACACGGCTCATACGTGATGAA
*
18217 GAGTTCTGGCCATCTAAAGGTGATA
64 GAGATCTGGCCATCTAAAGGTGATA
* * * *
18242 GCACGGTTCCTACGTGATGAGGACG-GCTGGTTATCTAGGGTGACACGGCTCATACGTGATGAAG
1 ACACGGCTCATACGTGATGAAGA-GAGCTGGTTATCTAGGGTGACACGGCTCATACGTGATGAAG
18306 AGATCTGG
65 AGATCTGG
18314 TCGGGGTATG
Statistics
Matches: 260, Mismatches: 39, Indels: 56
0.73 0.11 0.16
Matches are distributed among these distances:
81 2 0.01
82 57 0.22
83 12 0.05
84 4 0.02
85 6 0.02
86 68 0.26
87 7 0.03
88 90 0.35
89 6 0.02
90 7 0.03
91 1 0.00
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (88 bp):
ACACGGCTCATACGTGATGAAGAGAGCTGGTTATCTAGGGTGACACGGCTCATACGTGATGAAGA
GATCTGGCCATCTAAAGGTGATA
Found at i:18406 original size:128 final size:128
Alignment explanation
Indices: 17884--18399 Score: 960
Period size: 128 Copynumber: 4.0 Consensus size: 128
17874 ATGAAGAGTT
* * *
17884 TGGTTATCTATGGTTGACACGGCTCCTACGTGATGAAGAGATCTGGTCGGGGAATGACACGGCTC
1 TGGTTATCTA-GGGTGACACGGCTCATACGTGATGAAGAGATCTGGTCGGGGTATGACACGGCTC
17949 ATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGGC
65 ATACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGGC
*
18013 TGGTTATCTAGGGTGACACGGCTCATACGTGATGAAGAGATCTGTTCGGGGTATGACACGGCTCA
1 TGGTTATCTAGGGTGACACGGCTCATACGTGATGAAGAGATCTGGTCGGGGTATGACACGGCTCA
*
18078 TACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAGCACGGTTCCTACGTGATGAGGACGGC
66 TACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGGC
*
18141 TGGTTATCTAGGGTGACACGGCTCATACGTGATGAAGAGATCTGTTCGGGGTATGACACGGCTCA
1 TGGTTATCTAGGGTGACACGGCTCATACGTGATGAAGAGATCTGGTCGGGGTATGACACGGCTCA
*
18206 TACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAGCACGGTTCCTACGTGATGAGGACGGC
66 TACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGGC
18269 TGGTTATCTAGGGTGACACGGCTCATACGTGATGAAGAGATCTGGTCGGGGTATGACACGGCTCA
1 TGGTTATCTAGGGTGACACGGCTCATACGTGATGAAGAGATCTGGTCGGGGTATGACACGGCTCA
18334 TACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGGC
66 TACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGGC
18397 TGG
1 TGG
18400 CCATCTAAAA
Statistics
Matches: 380, Mismatches: 7, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
128 370 0.97
129 10 0.03
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (128 bp):
TGGTTATCTAGGGTGACACGGCTCATACGTGATGAAGAGATCTGGTCGGGGTATGACACGGCTCA
TACGTGATGAAGAGTTCTGGCCATCTAAAGGTGATAACACGGTTCCTACGTGATGAGGACGGC
Found at i:18598 original size:63 final size:63
Alignment explanation
Indices: 18487--18606 Score: 165
Period size: 63 Copynumber: 1.9 Consensus size: 63
18477 TTTCAAAAGC
*
18487 AACTGTCTCTTAAAAGAGACAAAATTTTGTTTCAAAGGAAATGACTCAAAGATTGTTTAAAGGAA
1 AACTGTCTC-TAAAAGAGACAAAATTTCGTTTCAAAGGAAATGACTCAAAGA-TGTTTAAAGGAA
*
18552 AACTGTCTC-AAACGAGACAAAA-TTCGTTT-AAAGGGAAATGATCTCAAAGATGTTT
1 AACTGTCTCTAAAAGAGACAAAATTTCGTTTCAAA-GGAAATGA-CTCAAAGATGTTT
18607 GTTTTGTTTC
Statistics
Matches: 51, Mismatches: 2, Indels: 7
0.85 0.03 0.12
Matches are distributed among these distances:
61 3 0.06
62 19 0.37
63 20 0.39
65 9 0.18
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.28
Consensus pattern (63 bp):
AACTGTCTCTAAAAGAGACAAAATTTCGTTTCAAAGGAAATGACTCAAAGATGTTTAAAGGAA
Found at i:18633 original size:35 final size:35
Alignment explanation
Indices: 18594--18673 Score: 92
Period size: 36 Copynumber: 2.3 Consensus size: 35
18584 GGGAAATGAT
* * *
18594 CTCAAAGATGTTTG-TTTTGTT-TCAAAGGAAACAGA
1 CTCAAAGATG-GTGATTTTGTTCCCAAA-GAAACAAA
18629 CTCAAAGATGGTGAATTTTGTTCCCAAAGAAACAAA
1 CTCAAAGATGGTG-ATTTTGTTCCCAAAGAAACAAA
18665 CTCAAAGAT
1 CTCAAAGAT
18674 TTTATATTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
34 2 0.05
35 10 0.26
36 23 0.59
37 4 0.10
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (35 bp):
CTCAAAGATGGTGATTTTGTTCCCAAAGAAACAAA
Found at i:18852 original size:63 final size:61
Alignment explanation
Indices: 18746--18867 Score: 172
Period size: 63 Copynumber: 2.0 Consensus size: 61
18736 ATGTGGGTGG
* * * *
18746 TTTCAAAAGAAGTTGTCTCGAGAGACAAATTTTGTTTCCAAAGAAACAGACTCAAAGATTT
1 TTTCAAAAGAAATTGTCTCAAGAGAAAAATTTTGTTTCAAAAGAAACAGACTCAAAGATTT
* *
18807 TTTCAAAAGAAATTGTCGTTAAGAGATAAAATTTTGTTTTAAAAGAAACAGACTCAAAGAT
1 TTTCAAAAGAAATTGTC-TCAAGAGA-AAAATTTTGTTTCAAAAGAAACAGACTCAAAGAT
18868 GGATTACATC
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
61 16 0.30
62 6 0.11
63 31 0.58
ACGTcount: A:0.43, C:0.11, G:0.16, T:0.30
Consensus pattern (61 bp):
TTTCAAAAGAAATTGTCTCAAGAGAAAAATTTTGTTTCAAAAGAAACAGACTCAAAGATTT
Found at i:19135 original size:68 final size:66
Alignment explanation
Indices: 19045--19244 Score: 224
Period size: 67 Copynumber: 3.0 Consensus size: 66
19035 AAAGATTTAC
* * * * * * *
19045 TTCAAGAGAAACTGTCTCAAGAGACACAAAATTCAT-TTT-AAGAGAAACAGATTCAAAGATTTT
1 TTCAAAAGAAATTATCTTAAGAGAGACAAAATT-ATGTTTCAA-AGAAACAAACTCAAAGA--TT
*
19108 TTTTT
62 TTTGT
*
19113 TTCAAAAGAAATTATCTTAAGAGAGACAAAATTTTGTTTCCAAAGAAACAAACTCAAAGATTTTT
1 TTCAAAAGAAATTATCTTAAGAGAGACAAAATTATGTTT-CAAAGAAACAAACTCAAAGATTTTT
19178 GT
65 GT
* * *
19180 TTCAAAAGAAATTATCTTAAGAGAGACAAAATTTTATTTCCAAAGAAACCAACTCAAAGATTTTT
1 TTCAAAAGAAATTATCTTAAGAGAGACAAAATTATGTTT-CAAAGAAACAAACTCAAAGATTTTT
19245 TCAAAAGAAA
Statistics
Matches: 118, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
67 70 0.59
68 31 0.26
69 15 0.13
70 2 0.02
ACGTcount: A:0.44, C:0.13, G:0.12, T:0.32
Consensus pattern (66 bp):
TTCAAAAGAAATTATCTTAAGAGAGACAAAATTATGTTTCAAAGAAACAAACTCAAAGATTTTTG
T
Found at i:19158 original size:37 final size:37
Alignment explanation
Indices: 19107--19227 Score: 112
Period size: 37 Copynumber: 3.5 Consensus size: 37
19097 TCAAAGATTT
*
19107 TTTTTTTTCAAAAGAAATTATCTTAAGAGAGACAAAA
1 TTTTGTTTCAAAAGAAATTATCTTAAGAGAGACAAAA
* ** * * *
19144 TTTTGTTTCCAAAGAAACAAAC-TCA-A-AG----AT
1 TTTTGTTTCAAAAGAAATTATCTTAAGAGAGACAAAA
19174 TTTTGTTTCAAAAGAAATTATCTTAAGAGAGACAAAA
1 TTTTGTTTCAAAAGAAATTATCTTAAGAGAGACAAAA
* *
19211 TTTTATTTCCAAAGAAA
1 TTTTGTTTCAAAAGAAA
19228 CCAACTCAAA
Statistics
Matches: 62, Mismatches: 15, Indels: 14
0.68 0.16 0.15
Matches are distributed among these distances:
30 19 0.31
31 2 0.03
32 1 0.02
33 2 0.03
34 2 0.03
35 1 0.02
36 2 0.03
37 33 0.53
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.34
Consensus pattern (37 bp):
TTTTGTTTCAAAAGAAATTATCTTAAGAGAGACAAAA
Found at i:19205 original size:69 final size:67
Alignment explanation
Indices: 19087--19244 Score: 253
Period size: 67 Copynumber: 2.3 Consensus size: 67
19077 TCATTTTAAG
* * * *
19087 AGAAACAGATTCAAAGATTTTTTTTTTTCAAAAGAAATTATCTTAAGAGAGACAAAATTTTGTTT
1 AGAAACAAACTCAAAGA--TTTTTGTTTCAAAAGAAATTATCTTAAGAGAGACAAAATTTTATTT
19152 CCAA
64 CCAA
19156 AGAAACAAACTCAAAGATTTTTGTTTCAAAAGAAATTATCTTAAGAGAGACAAAATTTTATTTCC
1 AGAAACAAACTCAAAGATTTTTGTTTCAAAAGAAATTATCTTAAGAGAGACAAAATTTTATTTCC
19221 AA
66 AA
*
19223 AGAAACCAACTCAAAGATTTTT
1 AGAAACAAACTCAAAGATTTTT
19245 TCAAAAGAAA
Statistics
Matches: 84, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
67 69 0.82
69 15 0.18
ACGTcount: A:0.44, C:0.12, G:0.11, T:0.33
Consensus pattern (67 bp):
AGAAACAAACTCAAAGATTTTTGTTTCAAAAGAAATTATCTTAAGAGAGACAAAATTTTATTTCC
AA
Found at i:19270 original size:26 final size:27
Alignment explanation
Indices: 19216--19272 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
19206 CAAAATTTTA
*
19216 TTTCCAAAGAAACCAACTCAAAGATTT
1 TTTCAAAAGAAACCAACTCAAAGATTT
19243 TTTCAAAAGAAA-CAATCTCAAAGATTT
1 TTTCAAAAGAAACCAA-CTCAAAGATTT
19270 TTT
1 TTT
19273 TCACAAAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 3 0.11
27 25 0.89
ACGTcount: A:0.44, C:0.18, G:0.07, T:0.32
Consensus pattern (27 bp):
TTTCAAAAGAAACCAACTCAAAGATTT
Found at i:19334 original size:52 final size:52
Alignment explanation
Indices: 19259--19361 Score: 172
Period size: 52 Copynumber: 2.0 Consensus size: 52
19249 AAGAAACAAT
19259 CTCAAAGATTTTTTTCACAAAATTGTCTCAAGAGAGACAAAACTTTGTTTCAGA
1 CTCAAAGA-TTTTTTCACAAAATTGTCTCAAGAGAGACAAAAC-TTGTTTCAGA
*
19313 CTCAAAGA-TTTTTCACGAAATTGTCTCAAGAGAGACAAAACTTGTTTCA
1 CTCAAAGATTTTTTCACAAAATTGTCTCAAGAGAGACAAAACTTGTTTCA
19362 AAATAAATAG
Statistics
Matches: 48, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
51 8 0.17
52 32 0.67
54 8 0.17
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.32
Consensus pattern (52 bp):
CTCAAAGATTTTTTCACAAAATTGTCTCAAGAGAGACAAAACTTGTTTCAGA
Found at i:19438 original size:29 final size:28
Alignment explanation
Indices: 19372--19563 Score: 260
Period size: 28 Copynumber: 6.8 Consensus size: 28
19362 AAATAAATAG
* * *
19372 ACTCAAAGATATTTTACAAAAGAAAC-A
1 ACTCAAAGATTTTTTTCAAAAGGAACAA
19399 ACTCAAAGATTTTTATTCAAAAGGAACAA
1 ACTCAAAGATTTTT-TTCAAAAGGAACAA
* *
19428 ACTCCAAGATTTTTATTCAAAAGGAGCAA
1 ACTCAAAGATTTTT-TTCAAAAGGAACAA
*
19457 ACTCAAAGATTTTTTTCAAGAGGAACAA
1 ACTCAAAGATTTTTTTCAAAAGGAACAA
*
19485 ACTCAAAGATTTTTTTTCAAGAGGAACAA
1 ACTCAAAGA-TTTTTTTCAAAAGGAACAA
* *
19514 ACTCAAAGATTTTTTTCAAGAGAAACAA
1 ACTCAAAGATTTTTTTCAAAAGGAACAA
*
19542 ACCCAAAGATTTTTTTCAAAAG
1 ACTCAAAGATTTTTTTCAAAAG
19564 AAATTGTCTT
Statistics
Matches: 151, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
27 13 0.09
28 69 0.46
29 69 0.46
ACGTcount: A:0.45, C:0.15, G:0.11, T:0.28
Consensus pattern (28 bp):
ACTCAAAGATTTTTTTCAAAAGGAACAA
Found at i:19481 original size:57 final size:56
Alignment explanation
Indices: 19372--19563 Score: 253
Period size: 57 Copynumber: 3.4 Consensus size: 56
19362 AAATAAATAG
* * * * *
19372 ACTCAAAGATATTTTACAAAAGAAAC-AACTCAAAGATTTTTATTCAAAAGGAACAA
1 ACTCCAAGATTTTTTTCAAAAGGAACAAACTCAAAGATTTTT-TTCAAGAGGAACAA
*
19428 ACTCCAAGATTTTTATTCAAAAGGAGCAAACTCAAAGATTTTTTTCAAGAGGAACAA
1 ACTCCAAGATTTTT-TTCAAAAGGAACAAACTCAAAGATTTTTTTCAAGAGGAACAA
* * *
19485 ACTCAAAGATTTTTTTTCAAGAGGAACAAACTCAAAGATTTTTTTCAAGAGAAACAA
1 ACTCCAAGA-TTTTTTTCAAAAGGAACAAACTCAAAGATTTTTTTCAAGAGGAACAA
19542 AC-CCAAAGATTTTTTTCAAAAG
1 ACTCC-AAGATTTTTTTCAAAAG
19564 AAATTGTCTT
Statistics
Matches: 120, Mismatches: 12, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
56 25 0.21
57 75 0.62
58 20 0.17
ACGTcount: A:0.45, C:0.15, G:0.11, T:0.28
Consensus pattern (56 bp):
ACTCCAAGATTTTTTTCAAAAGGAACAAACTCAAAGATTTTTTTCAAGAGGAACAA
Found at i:19889 original size:36 final size:36
Alignment explanation
Indices: 19805--19908 Score: 124
Period size: 36 Copynumber: 3.0 Consensus size: 36
19795 GAGAAAATGA
* * *
19805 TGTCTCAAGCGAGACGAAATTTG-CTTTA-AGATAT
1 TGTCTCAAGCGAGACAAAATTTGTTTTTAGAGAAAT
* **
19839 AGTCTCAAATGAGACAAAATTTGTTTTTAGAGAAAT
1 TGTCTCAAGCGAGACAAAATTTGTTTTTAGAGAAAT
*
19875 TGTCTCAAGCGAGACAAAGTTTGTTTTT-GAGAAA
1 TGTCTCAAGCGAGACAAAATTTGTTTTTAGAGAAA
19909 CGATTTCAAG
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
34 19 0.33
35 10 0.17
36 29 0.50
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.33
Consensus pattern (36 bp):
TGTCTCAAGCGAGACAAAATTTGTTTTTAGAGAAAT
Found at i:20054 original size:105 final size:105
Alignment explanation
Indices: 19918--20114 Score: 297
Period size: 105 Copynumber: 1.9 Consensus size: 105
19908 ACGATTTCAA
* *
19918 GTGAGATCAACTTTGTTTAATGTGAAACAAATTCGAAATTTGGATCTCAAAGGGAAAAGGTCTCA
1 GTGAGATCAACTTTGTTTAATGTGAAACAAATTCAAAATTTGGATCTCAAAGGAAAAAGGTCTCA
19983 AGCGAGACGAAATTTGTTTTAAAAGAAACAACAATCTAAG
66 AGCGAGACGAAATTTGTTTTAAAAGAAACAACAATCTAAG
* * * * *
20023 GTGAGATTAATTTTGTTTTAA-GTGAATCAAATTCAAAATTTGTATCTCAAAGGAAAAATGTCTC
1 GTGAGATCAACTTTG-TTTAATGTGAAACAAATTCAAAATTTGGATCTCAAAGGAAAAAGGTCTC
* *
20087 AAGCGAGACGAAGTTTGTTTTAAGAGAA
65 AAGCGAGACGAAATTTGTTTTAAAAGAA
20115 TTTGTCTCAA
Statistics
Matches: 82, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
105 77 0.94
106 5 0.06
ACGTcount: A:0.40, C:0.11, G:0.20, T:0.30
Consensus pattern (105 bp):
GTGAGATCAACTTTGTTTAATGTGAAACAAATTCAAAATTTGGATCTCAAAGGAAAAAGGTCTCA
AGCGAGACGAAATTTGTTTTAAAAGAAACAACAATCTAAG
Found at i:20121 original size:36 final size:36
Alignment explanation
Indices: 20081--20217 Score: 170
Period size: 36 Copynumber: 3.8 Consensus size: 36
20071 AAAGGAAAAA
* * *
20081 TGTCTCAAGCGAGACGAAGTTTGTTTTAAGAGAATT
1 TGTCTCAAGCGAGACAAAATTTGTTTTAAGAGAAAT
* * **
20117 TGTCTCAAACGAGACAAAATTTGTTTTTAGA-AAGC
1 TGTCTCAAGCGAGACAAAATTTGTTTTAAGAGAAAT
*
20152 TGTCTCAAGCGAGACAAAATTTGCTTTGAA-AGAAAT
1 TGTCTCAAGCGAGACAAAATTTG-TTTTAAGAGAAAT
20188 TGTCTCAAGCGAGACAAAAATTTGTTTTAA
1 TGTCTCAAGCGAGAC-AAAATTTGTTTTAA
20218 AATTCTCAAA
Statistics
Matches: 86, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
35 25 0.29
36 53 0.62
37 8 0.09
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (36 bp):
TGTCTCAAGCGAGACAAAATTTGTTTTAAGAGAAAT
Found at i:20191 original size:71 final size:72
Alignment explanation
Indices: 20081--20215 Score: 202
Period size: 71 Copynumber: 1.9 Consensus size: 72
20071 AAAGGAAAAA
* * * *
20081 TGTCTCAAGCGAGACGAAGTTTGTTTTAAGAGAATTTGTCTCAAACGAGAC-AAAATTTGTTTTT
1 TGTCTCAAGCGAGACAAAATTTGTTTGAAGAGAAATTGTCTCAAACGAGACAAAAATTTGTTTTT
20145 AGAAAGC
66 AGAAAGC
*
20152 TGTCTCAAGCGAGACAAAATTTGCTTTGAA-AGAAATTGTCTCAAGCGAGACAAAAATTTGTTTT
1 TGTCTCAAGCGAGACAAAATTTG-TTTGAAGAGAAATTGTCTCAAACGAGACAAAAATTTGTTTT
20216 AAAATTCTCA
Statistics
Matches: 57, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
71 40 0.70
72 17 0.30
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.32
Consensus pattern (72 bp):
TGTCTCAAGCGAGACAAAATTTGTTTGAAGAGAAATTGTCTCAAACGAGACAAAAATTTGTTTTT
AGAAAGC
Found at i:20594 original size:16 final size:16
Alignment explanation
Indices: 20595--20646 Score: 76
Period size: 16 Copynumber: 3.5 Consensus size: 16
20585 ATGTATGTAT
20595 ATGTATGTATGAGTTG
1 ATGTATGTATGAGTTG
20611 ATGTATGTAT-A--T-
1 ATGTATGTATGAGTTG
20623 ATGTATGTATGAGTTG
1 ATGTATGTATGAGTTG
20639 ATGTATGT
1 ATGTATGT
20647 TTCTCAATCT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
12 10 0.31
13 2 0.06
15 2 0.06
16 18 0.56
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.46
Consensus pattern (16 bp):
ATGTATGTATGAGTTG
Found at i:20632 original size:28 final size:27
Alignment explanation
Indices: 20573--20647 Score: 125
Period size: 28 Copynumber: 2.8 Consensus size: 27
20563 TGTAACATGC
*
20573 ATGTATGTGTTGATGTATG-TATATGT
1 ATGTATGAGTTGATGTATGTTATATGT
20599 ATGTATGAGTTGATGTATGTATATATGT
1 ATGTATGAGTTGATGTATGT-TATATGT
20627 ATGTATGAGTTGATGTATGTT
1 ATGTATGAGTTGATGTATGTT
20648 TCTCAATCTG
Statistics
Matches: 46, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
26 18 0.39
27 1 0.02
28 27 0.59
ACGTcount: A:0.25, C:0.00, G:0.27, T:0.48
Consensus pattern (27 bp):
ATGTATGAGTTGATGTATGTTATATGT
Found at i:21864 original size:13 final size:13
Alignment explanation
Indices: 21831--21865 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
21821 TGTTCTTTGC
21831 TTTCTCTTTGATT
1 TTTCTCTTTGATT
*
21844 TTT-GCTTTGATT
1 TTTCTCTTTGATT
21856 TTTCTCTTTG
1 TTTCTCTTTG
21866 CTCTTTGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.06, C:0.14, G:0.11, T:0.69
Consensus pattern (13 bp):
TTTCTCTTTGATT
Found at i:22562 original size:26 final size:26
Alignment explanation
Indices: 22484--22563 Score: 73
Period size: 26 Copynumber: 3.3 Consensus size: 26
22474 TTTCAAGGTG
*
22484 GAAAGAATATTTCAAAGTCTCAAAGA
1 GAAAGAATATTTCAAGGTCTCAAAGA
** *
22510 GAGGGAATGTTTCAAGG--TC---GA
1 GAAAGAATATTTCAAGGTCTCAAAGA
22531 -AAAGAATATTTCAAGGTCTCAAAGA
1 GAAAGAATATTTCAAGGTCTCAAAGA
*
22556 GATAGAAT
1 GAAAGAAT
22564 GTCAAAAATT
Statistics
Matches: 40, Mismatches: 8, Indels: 12
0.67 0.13 0.20
Matches are distributed among these distances:
20 13 0.32
21 2 0.05
22 2 0.05
24 2 0.05
25 2 0.05
26 19 0.47
ACGTcount: A:0.44, C:0.10, G:0.23, T:0.24
Consensus pattern (26 bp):
GAAAGAATATTTCAAGGTCTCAAAGA
Found at i:22564 original size:46 final size:45
Alignment explanation
Indices: 22472--22565 Score: 143
Period size: 46 Copynumber: 2.1 Consensus size: 45
22462 ATAAATACAG
* *
22472 TGTTTCAAGGTGGAAAGAATATTTCAAAGTCTCAAAGAGAGGGAA
1 TGTTTCAAGGTGAAAAGAATATTTCAAAGTCTCAAAGAGAGAGAA
* *
22517 TGTTTCAAGGTCGAAAAGAATATTTCAAGGTCTCAAAGAGATAGAA
1 TGTTTCAAGGT-GAAAAGAATATTTCAAAGTCTCAAAGAGAGAGAA
22563 TGT
1 TGT
22566 CAAAAATTGG
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
45 11 0.25
46 33 0.75
ACGTcount: A:0.39, C:0.10, G:0.24, T:0.27
Consensus pattern (45 bp):
TGTTTCAAGGTGAAAAGAATATTTCAAAGTCTCAAAGAGAGAGAA
Found at i:27004 original size:29 final size:29
Alignment explanation
Indices: 26972--27031 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
26962 TGGTAATAAT
* * *
26972 AAATTAAAGGGCTAAAACAGAAAAATAGA
1 AAATTAAAAGACTAAAACAGAAAAACAGA
* *
27001 AAATTAAAAGACTAAAATAGCAAAACAGA
1 AAATTAAAAGACTAAAACAGAAAAACAGA
27030 AA
1 AA
27032 TGTAGGGACT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.65, C:0.08, G:0.13, T:0.13
Consensus pattern (29 bp):
AAATTAAAAGACTAAAACAGAAAAACAGA
Found at i:28285 original size:17 final size:17
Alignment explanation
Indices: 28248--28297 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
28238 GGCTTCGCCC
* **
28248 TTTTCTTTCTCTCTTAG
1 TTTTCTTTCTTTCTTTT
28265 TTTTCTTTCTTTCTTTT
1 TTTTCTTTCTTTCTTTT
28282 TTTT-TTT-TTT-TTTT
1 TTTTCTTTCTTTCTTTT
28296 TT
1 TT
28298 CAAAACCGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
14 6 0.20
15 3 0.10
16 3 0.10
17 18 0.60
ACGTcount: A:0.02, C:0.14, G:0.02, T:0.82
Consensus pattern (17 bp):
TTTTCTTTCTTTCTTTT
Found at i:28739 original size:11 final size:11
Alignment explanation
Indices: 28725--28766 Score: 77
Period size: 11 Copynumber: 3.9 Consensus size: 11
28715 GGGCTCGTGT
28725 TTGGGCCTTGG
1 TTGGGCCTTGG
28736 TTGGGCCTTGG
1 TTGGGCCTTGG
28747 TTGGGCCTT-G
1 TTGGGCCTTGG
28757 TTGGGCCTTG
1 TTGGGCCTTG
28767 TTGTATTGGG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
10 10 0.33
11 20 0.67
ACGTcount: A:0.00, C:0.19, G:0.43, T:0.38
Consensus pattern (11 bp):
TTGGGCCTTGG
Found at i:28761 original size:10 final size:10
Alignment explanation
Indices: 28710--28769 Score: 75
Period size: 11 Copynumber: 5.6 Consensus size: 10
28700 ACCCTAATTT
28710 TTGTTGGGCTC
1 TTGTTGGGC-C
*
28721 GTGTTTGGGCC
1 TTG-TTGGGCC
28732 TTGGTTGGGCC
1 TT-GTTGGGCC
28743 TTGGTTGGGCC
1 TT-GTTGGGCC
28754 TTGTTGGGCC
1 TTGTTGGGCC
28764 TTGTTG
1 TTGTTG
28770 TATTGGGCTT
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
10 14 0.31
11 24 0.53
12 7 0.16
ACGTcount: A:0.00, C:0.17, G:0.42, T:0.42
Consensus pattern (10 bp):
TTGTTGGGCC
Found at i:28820 original size:19 final size:19
Alignment explanation
Indices: 28809--28844 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
28799 AATATGTAAT
28809 TAAT-ATAATAATAATAAA
1 TAATAATAATAATAATAAA
28827 TAATAATAATAATAATAA
1 TAATAATAATAATAATAA
28845 CAAAATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
TAATAATAATAATAATAAA
Found at i:28821 original size:3 final size:3
Alignment explanation
Indices: 28809--28844 Score: 56
Period size: 3 Copynumber: 12.0 Consensus size: 3
28799 AATATGTAAT
28809 TAA T-A TAA TAA TAA TAAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA
28845 CAAAATTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 2 0.06
3 26 0.84
4 3 0.10
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:33630 original size:2 final size:2
Alignment explanation
Indices: 33625--33697 Score: 54
Period size: 2 Copynumber: 38.5 Consensus size: 2
33615 ATAGTTTAGC
33625 AT AT AT -T AT A- AT AT AT -T AT AT AGT AT AT -T AT AT -T AT AGT
1 AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT A-T
33664 AT -T AT AGT AT AT AT -T AT AT CAT AT AT AT AT -T AT A
1 AT AT AT A-T AT AT AT AT AT AT -AT AT AT AT AT AT AT A
33698 GAGAAAATAA
Statistics
Matches: 59, Mismatches: 0, Indels: 24
0.71 0.00 0.29
Matches are distributed among these distances:
1 8 0.14
2 43 0.73
3 8 0.14
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (2 bp):
AT
Found at i:33645 original size:5 final size:5
Alignment explanation
Indices: 33626--33697 Score: 58
Period size: 5 Copynumber: 13.8 Consensus size: 5
33616 TAGTTTAGCA
* *
33626 TATAT TATAA TATAT TATAT AGTATAT TATAT TATA- -GTAT TATAGT
1 TATAT TATAT TATAT TATAT --TATAT TATAT TATAT TATAT TATA-T
*
33672 ATATAT TATAT CATAT ATATAT TATA
1 -TATAT TATAT TATAT -TATAT TATA
33698 GAGAAAATAA
Statistics
Matches: 54, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
3 2 0.04
5 37 0.69
6 6 0.11
7 9 0.17
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.51
Consensus pattern (5 bp):
TATAT
Found at i:33865 original size:19 final size:19
Alignment explanation
Indices: 33841--33945 Score: 111
Period size: 19 Copynumber: 5.2 Consensus size: 19
33831 GCGATTTTGA
33841 AAAATGTGTTGCGATAGTT
1 AAAATGTGTTGCGATAGTT
33860 AAAATGTGTTGCGATAGTT
1 AAAATGTGTTGCGATAGTT
* *
33879 AAAATGTGTTGTGAGAGTTT
1 AAAATGTGTTGCGATAG-TT
*
33899 GAAAAACGTGTTGTTGCGATAGTG
1 --AAAA--TG-TGTTGCGATAGTT
* *
33923 AAAAAGTGTTGCGATAGTG
1 AAAATGTGTTGCGATAGTT
33942 AAAA
1 AAAA
33946 ATCCAAAATA
Statistics
Matches: 74, Mismatches: 6, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
19 51 0.69
20 3 0.04
22 8 0.11
24 3 0.04
25 9 0.12
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (19 bp):
AAAATGTGTTGCGATAGTT
Found at i:34281 original size:12 final size:11
Alignment explanation
Indices: 34251--34284 Score: 52
Period size: 12 Copynumber: 3.1 Consensus size: 11
34241 TCGTCCCGTC
34251 TCGGGTCG-GG
1 TCGGGTCGTGG
34261 TCGGGTCGTGG
1 TCGGGTCGTGG
34272 TCGTGGTCGTGG
1 TCG-GGTCGTGG
34284 T
1 T
34285 AATACGTGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 8 0.36
11 5 0.23
12 9 0.41
ACGTcount: A:0.00, C:0.18, G:0.53, T:0.29
Consensus pattern (11 bp):
TCGGGTCGTGG
Found at i:34498 original size:5 final size:5
Alignment explanation
Indices: 34488--34549 Score: 54
Period size: 5 Copynumber: 12.0 Consensus size: 5
34478 TTATTTTCTC
* * * *
34488 TATAT TATAT TATAT TGT-T TATAT TATAAA AATAT TATAG TATTAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TAT-AT TATAT TATAT TA-TAT TATAT
34539 TATTAT TATAT
1 TA-TAT TATAT
34550 ATTAATTTTT
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
4 3 0.07
5 30 0.67
6 12 0.27
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.56
Consensus pattern (5 bp):
TATAT
Found at i:34499 original size:19 final size:19
Alignment explanation
Indices: 34477--34515 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
34467 GGTCACTGAG
*
34477 ATTATTTTCTCTATATTAT
1 ATTATATTCTCTATATTAT
* *
34496 ATTATATTGTTTATATTAT
1 ATTATATTCTCTATATTAT
34515 A
1 A
34516 AAAATATTAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.62
Consensus pattern (19 bp):
ATTATATTCTCTATATTAT
Found at i:34534 original size:11 final size:10
Alignment explanation
Indices: 34520--34553 Score: 50
Period size: 11 Copynumber: 3.2 Consensus size: 10
34510 ATTATAAAAA
34520 TATTATAGTAT
1 TATTATA-TAT
34531 TATTATATTAT
1 TATTATA-TAT
34542 TATTATATAT
1 TATTATATAT
34552 TA
1 TA
34554 ATTTTTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 5 0.23
11 17 0.77
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (10 bp):
TATTATATAT
Found at i:36591 original size:26 final size:26
Alignment explanation
Indices: 36540--36593 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
36530 ATTCAAAACC
*
36540 TAGGACGCTTGATTTATTTCATGTCT
1 TAGGACGCTTGATTTATTTCACGTCT
* *
36566 TAGGATGCTTGATTTATTTCCCGTCT
1 TAGGACGCTTGATTTATTTCACGTCT
36592 TA
1 TA
36594 CTTTAATGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.19, C:0.17, G:0.19, T:0.46
Consensus pattern (26 bp):
TAGGACGCTTGATTTATTTCACGTCT
Found at i:39973 original size:11 final size:11
Alignment explanation
Indices: 39957--39981 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
39947 TAAATATAGC
39957 GTTGTGGAACA
1 GTTGTGGAACA
39968 GTTGTGGAACA
1 GTTGTGGAACA
39979 GTT
1 GTT
39982 ACATAGCTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.08, G:0.36, T:0.32
Consensus pattern (11 bp):
GTTGTGGAACA
Found at i:41440 original size:24 final size:23
Alignment explanation
Indices: 41405--41472 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 23
41395 TACCATATAC
41405 ATTTTAACTTTAAAATCTTTTCTTT
1 ATTTT-ACTTTAAAATCTTTT-TTT
*
41430 ATTTTACTTT-AAAT-TATTTTT
1 ATTTTACTTTAAAATCTTTTTTT
41451 ATTATTA-TTTAAATATCTTTTT
1 ATT-TTACTTTAAA-ATCTTTTT
41473 ACCAAACCCC
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
21 9 0.24
22 8 0.22
23 6 0.16
24 9 0.24
25 5 0.14
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.63
Consensus pattern (23 bp):
ATTTTACTTTAAAATCTTTTTTT
Done.