genome.fa.s6643.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006643.1 Hibiscus syriacus cultivar Beakdansim tig00016358_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94563

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10282--10319	20	1.9	20	88	0	58	52	21	18	7	1.70
16490--16525	18	2.0	18	88	0	54	16	22	25	36	1.94
17797--17939	55	2.6	55	86	6	193	27	15	25	32	1.95
18418--18448	15	2.0	16	93	6	55	32	6	16	45	1.72
19120--19145	2	13.0	2	100	0	52	50	0	0	50	1.00
20124--20264	64	2.2	64	84	6	178	28	18	23	29	1.98
20143--20302	65	2.5	65	84	1	196	28	16	23	31	1.96
20519--20558	20	2.0	21	85	14	57	45	7	5	42	1.54
20813--20998	65	2.9	63	81	7	214	29	23	19	27	1.98
22170--22220	26	1.9	27	84	4	68	39	9	11	39	1.75
22159--22383	93	2.4	94	93	3	382	36	7	16	39	1.76
22291--22454	66	2.5	65	81	7	197	37	7	15	39	1.75
22426--22477	26	2.0	27	92	3	88	36	7	17	38	1.78
22198--22659	160	2.9	159	87	4	671	37	7	16	39	1.76
22453--22607	65	2.3	67	89	5	226	37	7	16	39	1.76
22519--22968	95	5.0	90	81	12	460	36	8	15	40	1.77
22584--22714	26	4.9	27	69	11	99	35	8	18	38	1.81
22568--22923	81	4.1	81	75	16	320	35	7	16	39	1.77
22650--22970	95	3.5	95	89	6	487	34	8	15	41	1.78
24293--24322	2	15.5	2	93	6	53	50	0	0	50	1.00
25916--26014	5	19.4	5	95	4	180	59	0	0	40	0.97
27518--27597	38	2.2	36	90	4	124	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27525--27583	19	3.1	19	76	9	66	50	0	0	49	1.00
27660--27729	30	2.3	30	82	4	97	18	35	10	35	1.84
28613--28689	37	2.1	37	82	4	93	46	1	3	48	1.28
28920--28966	20	2.3	20	85	0	67	51	6	14	27	1.67
29126--29200	37	2.0	38	82	10	93	50	4	0	45	1.20
29813--29870	22	2.6	23	78	10	57	46	1	0	51	1.11
29872--30010	31	4.7	29	70	17	72	44	0	5	50	1.24
29975--30018	23	2.0	22	90	4	70	45	0	2	52	1.13
29928--30062	11	11.8	12	66	18	56	46	0	3	49	1.19
30018--30102	21	4.2	21	70	15	56	47	1	1	50	1.16
30204--30265	23	2.8	21	73	21	56	56	0	1	41	1.09
30209--30265	30	1.9	30	82	7	71	56	0	1	42	1.10
31584--31630	18	2.6	18	76	13	51	48	0	0	51	1.00
32148--32253	39	2.7	39	76	13	119	37	16	1	44	1.58
32407--32442	17	2.2	16	90	5	54	58	0	0	41	0.98
37372--37433	30	2.1	30	93	3	108	46	17	8	27	1.76
42569--42610	18	2.3	18	83	0	57	23	19	14	42	1.87
47518--47542	10	2.5	10	100	0	50	16	12	60	12	1.60
56433--56514	33	2.5	33	84	9	96	39	19	13	28	1.89
56787--56829	20	2.2	20	87	8	61	18	2	0	79	0.85
56870--56919	4	12.2	4	76	19	50	28	2	0	70	0.99
56878--56931	24	2.2	24	78	18	58	25	1	0	72	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58098--58128	16	1.9	16	93	0	53	48	25	12	12	1.77
58139--58199	23	2.7	23	86	0	86	24	21	19	34	1.96
59680--59840	21	7.7	21	70	14	66	26	0	24	48	1.56
59751--59842	40	2.3	41	79	7	107	22	0	27	50	1.50
60393--60972	309	1.9	307	90	1	937	33	26	15	24	1.95
63384--63433	23	2.2	23	92	0	82	34	22	6	38	1.78
65247--65299	17	3.1	17	86	0	70	35	16	5	41	1.73
66167--66216	21	2.4	21	100	0	100	18	38	4	40	1.69
71966--72015	24	2.0	25	84	11	66	38	2	4	56	1.30
73305--73351	15	3.0	15	81	6	58	61	0	0	38	0.96
78365--78454	29	3.0	29	63	23	69	30	13	5	51	1.64
79827--79867	21	2.0	21	95	0	73	48	4	0	46	1.23
80274--80405	60	2.2	59	80	6	142	39	12	10	37	1.78
82108--82153	18	2.6	18	100	0	92	36	10	26	26	1.89
87212--87321	54	2.0	54	100	0	220	33	9	24	32	1.87
92872--92915	12	3.7	12	100	0	88	27	18	38	15	1.91
92984--93081	29	3.4	29	91	2	153	15	30	32	21	1.94
93341--93386	23	2.0	23	91	0	74	47	4	34	13	1.62
93341--93401	23	2.6	23	81	5	59	50	6	32	9	1.61
93391--93443	21	2.5	21	96	0	97	62	0	35	1	1.06
93389--93420	17	1.9	16	93	6	55	62	0	37	0	0.95
93643--93732	45	2.0	47	86	8	132	40	0	12	47	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93604--93708	41	2.6	38	74	15	95	40	0	11	48	1.39
93891--93937	16	3.0	16	84	9	53	29	0	10	59	1.31
93912--93942	15	2.1	14	94	5	53	38	0	6	54	1.26

Tables:   1

The End!