Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006644.1 Hibiscus syriacus cultivar Beakdansim tig00016360_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51084

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
551--655
44
2.4
43
84
15
135
31
32
20
16
1.94
613--680
27
2.5
28
95
4
129
35
29
17
17
1.93
1444--1501
20
2.7
20
86
10
71
24
22
24
29
1.99
1489--1626
62
2.2
59
80
13
145
26
23
18
31
1.98
7012--7055
14
2.9
16
90
10
74
47
11
22
18
1.80
18944--18999
30
1.9
30
82
7
71
53
25
7
14
1.66
26366--26561
98
2.0
98
97
0
374
23
27
12
37
1.90
29799--29825
2
13.5
2
100
0
54
51
0
0
48
1.00
31150--31183
16
2.1
16
88
0
50
55
0
5
38
1.24
33416--33447
15
2.1
15
94
0
55
56
0
0
43
0.99
33436--33554
8
14.8
8
70
16
52
69
3
1
25
1.13
33503--33550
15
3.3
15
85
8
55
68
4
2
25
1.18
33511--33555
15
2.9
15
87
9
56
66
2
2
28
1.15
33566--33608
2
22.5
2
86
9
63
51
2
0
46
1.13
39066--39097
15
2.0
17
88
11
50
28
0
0
71
0.86
39073--39116
22
2.0
23
90
4
72
22
0
0
77
0.77
39073--39116
23
2.0
22
86
4
61
22
0
0
77
0.77
40073--40127
2
28.0
2
96
3
103
50
0
0
49
1.00
41262--41313
20
2.6
20
96
0
95
38
26
13
21
1.90
41369--41562
20
9.6
20
83
2
138
35
25
19
19
1.95
41369--41562
40
4.8
40
83
0
226
35
25
19
19
1.95
41369--41561
60
3.2
60
84
0
260
35
25
19
19
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41937--42006
33
2.1
33
91
0
113
11
22
18
47
1.81
42127--42181
14
3.6
14
73
21
56
41
23
25
9
1.83
42127--42197
33
2.2
33
94
0
124
43
25
22
8
1.81
42193--42289
19
5.7
19
71
22
81
10
24
21
43
1.84
42215--42303
14
5.7
14
76
21
88
8
25
22
42
1.83
42198--42311
33
3.5
33
95
2
212
9
24
20
45
1.81
42378--42432
25
2.2
26
81
15
71
18
9
18
54
1.69
44000--44462
91
5.1
92
93
4
816
22
12
19
46
1.83
44000--44458
181
2.5
181
96
2
827
22
12
19
45
1.83
44506--44634
19
7.3
19
75
17
125
45
28
17
8
1.77
44542--44634
33
2.8
32
91
4
150
46
27
18
7
1.76
44506--44634
52
2.5
52
74
14
140
45
28
17
8
1.77
44630--44762
19
7.6
19
75
16
110
11
19
24
45
1.83
44652--44706
16
3.7
14
78
19
58
10
21
23
43
1.84
44635--44725
33
2.8
33
90
5
150
10
20
21
46
1.82
46650--46685
14
2.6
14
95
0
63
33
0
22
44
1.53
46790--46891
19
5.6
19
86
13
160
45
17
22
14
1.85
46805--46867
33
1.9
33
100
0
126
49
17
20
12
1.79
46920--47202
19
15.7
19
86
11
409
14
21
16
47
1.82
46898--47229
52
6.3
55
86
10
359
14
20
18
46
1.83
50397--50722
20
16.5
20
84
8
402
20
19
26
33
1.96
50397--50722
39
8.3
40
87
5
402
20
19
26
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50690--50742
21
2.6
20
87
3
70
11
18
26
43
1.84

Tables:   1

The End!