Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006645.1 Hibiscus syriacus cultivar Beakdansim tig00016361_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  164006

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1412--1493
41
2.0
41
88
4
123
14
26
41
17
1.88
1412--1493
20
4.1
20
85
4
121
14
26
41
17
1.88
3597--3646
26
1.9
26
87
0
73
30
22
26
22
1.99
4016--4134
3
41.0
3
70
21
67
39
0
2
57
1.12
4019--4136
29
4.2
29
76
18
131
39
0
2
57
1.12
4015--4137
8
17.4
7
70
22
73
40
0
2
56
1.12
7899--8727
75
11.2
75
71
8
387
30
26
16
27
1.97
7913--8057
69
2.1
69
83
2
175
31
22
18
26
1.97
7899--8281
144
2.6
144
78
8
373
30
26
15
27
1.96
8654--8846
69
2.8
69
85
3
255
34
29
14
22
1.93
15861--16300
55
8.1
54
80
7
360
28
24
18
28
1.98
15861--16298
161
2.7
159
84
6
515
28
24
18
28
1.98
16309--16382
37
2.0
38
94
2
132
25
21
17
35
1.95
17662--17704
7
5.9
7
78
10
50
2
13
0
83
0.74
17655--17724
16
4.4
16
84
8
72
5
12
0
81
0.86
17663--17741
18
3.7
23
76
20
89
6
15
0
78
0.94
17655--17768
11
10.2
10
69
22
50
6
15
0
78
0.95
17669--17773
17
6.0
17
83
9
115
6
17
0
76
1.00
24278--24429
45
3.3
45
94
3
250
38
21
9
30
1.85
29987--30048
32
2.0
32
87
3
90
53
6
16
24
1.66
33046--33186
64
2.2
65
84
1
176
26
19
24
29
1.98
33065--33224
65
2.5
65
85
1
205
26
16
25
31
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33065--33273
65
3.2
65
78
7
176
26
17
23
31
1.97
37711--37772
20
2.9
21
85
7
72
19
24
33
22
1.97
44201--44268
29
2.3
31
80
14
81
54
7
10
27
1.61
44310--44391
29
2.8
29
85
5
103
53
13
7
25
1.65
45944--46164
8
27.6
8
95
0
352
48
28
1
21
1.58
46095--46980
8
110.8
8
98
0
1700
38
37
11
12
1.81
51574--51598
2
12.5
2
100
0
50
52
0
0
48
1.00
52337--52408
29
2.5
29
97
0
135
34
13
6
44
1.71
59150--59235
24
3.6
24
90
0
127
24
13
20
40
1.89
62570--62638
27
2.6
27
100
0
138
36
5
18
39
1.75
67261--67508
125
2.0
125
86
3
349
50
8
4
37
1.53
68712--68779
3
22.0
3
91
5
109
63
1
0
35
1.04
68700--68779
22
3.8
22
90
4
121
62
1
0
36
1.03
68979--69411
39
11.1
39
86
0
535
22
24
11
41
1.87
69507--69699
36
5.3
35
70
12
131
40
13
16
30
1.86
69453--69712
73
3.6
73
92
1
414
39
12
15
32
1.85
69542--69663
37
3.3
35
72
13
104
40
12
15
31
1.84
70423--70499
22
3.5
22
91
3
120
38
12
12
35
1.82
70874--70950
22
3.5
22
91
3
120
38
12
12
35
1.82
78217--78249
6
5.7
6
85
7
50
84
0
3
12
0.72
79552--79796
125
2.0
124
90
4
386
50
9
4
35
1.56
80828--80910
3
27.0
3
83
11
98
65
1
0
33
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
80828--80909
22
3.8
22
85
10
107
64
1
0
34
1.01
85186--85247
32
2.0
31
84
9
81
27
0
9
62
1.26
85873--85921
19
2.6
18
81
9
62
20
4
2
73
1.10
85948--85985
16
2.5
15
87
8
58
34
2
0
63
1.09
88871--88908
18
2.1
18
100
0
76
23
28
10
36
1.88
91290--91330
19
2.2
19
90
0
64
19
9
0
70
1.14
91277--91330
9
5.5
10
82
10
58
20
11
0
68
1.19
91278--91333
5
11.4
5
83
11
53
21
8
0
69
1.15
92882--93047
76
2.2
74
84
7
210
30
1
12
56
1.43
92937--92998
32
1.9
32
84
12
83
25
0
11
62
1.28
92981--93095
58
2.0
56
88
8
169
30
0
15
53
1.42
93673--93721
19
2.6
18
81
9
62
20
4
2
73
1.10
94100--94142
17
2.5
17
96
0
77
23
18
27
30
1.98
99845--99876
16
2.0
16
100
0
64
37
25
31
6
1.81
112268--112400
40
3.3
40
67
15
112
30
24
20
24
1.99
113947--113992
6
7.8
6
90
4
76
50
13
0
36
1.41
114035--114064
2
15.0
2
100
0
60
50
0
0
50
1.00
115320--115358
10
3.8
10
86
3
51
28
5
0
66
1.12
115320--115358
20
1.9
21
89
5
62
28
5
0
66
1.12
117620--117921
86
3.5
84
79
5
320
25
23
17
33
1.96
117620--117921
43
7.0
44
75
5
262
25
23
17
33
1.96
127812--127841
15
2.0
15
100
0
60
33
6
13
46
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
128136--128175
7
5.7
7
90
0
62
42
40
12
5
1.64
133557--133659
31
3.3
31
100
0
206
54
12
6
26
1.62
137334--137634
82
3.7
82
75
8
285
24
21
20
32
1.97
140386--140594
101
2.0
104
88
2
316
33
16
16
34
1.91
144285--144516
114
2.0
114
98
0
446
48
18
6
26
1.73
145655--145721
27
2.5
26
76
11
73
62
7
4
25
1.40
145655--145722
28
2.5
27
74
9
68
63
7
4
25
1.39
147969--148135
83
2.0
80
93
3
280
23
16
16
43
1.88
155056--155101
6
7.8
6
78
11
51
80
4
2
13
0.95
155056--155100
11
3.9
11
88
5
63
80
4
2
13
0.97
155056--155100
22
2.0
24
91
8
76
80
4
2
13
0.97

Tables:   1

The End!