genome.fa.s6646.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006646.1 Hibiscus syriacus cultivar Beakdansim tig00016363_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69663

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15321--15848	156	3.4	153	79	8	534	47	4	19	27	1.70
16572--16645	26	3.0	25	84	9	91	54	1	2	41	1.23
16573--16647	22	3.1	24	86	7	91	53	1	2	42	1.23
16573--16655	25	3.3	25	72	25	68	54	1	2	42	1.21
16816--16870	21	2.5	22	76	8	58	63	0	1	34	1.05
17416--17490	31	2.4	31	84	0	96	50	10	8	30	1.66
19288--19335	24	2.0	25	83	4	62	58	0	0	41	0.98
20933--20963	8	3.9	8	95	0	53	29	38	0	32	1.57
25134--25182	25	2.0	25	88	4	73	20	16	0	63	1.31
26042--26155	59	1.9	59	82	3	140	35	18	11	34	1.87
26711--26758	25	1.9	25	82	0	60	35	25	0	39	1.56
33645--33690	19	2.3	20	81	7	58	28	30	17	23	1.97
33701--33923	41	5.5	41	80	7	240	16	19	23	40	1.91
33726--33798	20	3.6	20	67	17	60	10	21	24	42	1.85
33770--33923	81	1.9	82	89	1	238	15	19	24	40	1.90
33848--33920	20	3.6	20	68	17	69	10	20	26	42	1.85
33703--33930	122	1.9	122	91	0	375	16	19	23	40	1.91
35111--35204	21	4.6	21	73	15	88	34	27	18	20	1.95
35090--35183	40	2.3	41	87	8	131	38	25	19	17	1.92
35233--35301	19	3.6	19	98	0	129	26	17	30	26	1.97
43124--43190	20	3.2	20	77	12	73	49	0	0	50	1.00
43127--43184	12	4.7	13	74	16	52	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43125--43232	20	5.3	20	66	24	57	50	1	0	46	1.18
43128--43239	14	8.0	14	64	20	56	51	1	0	45	1.17
47165--47214	2	24.5	2	82	11	57	46	0	6	48	1.27
48630--48663	18	1.9	17	88	5	50	64	5	0	29	1.17
55714--55748	18	1.9	18	88	0	52	34	2	60	2	1.26
56713--56746	18	1.9	17	88	5	50	64	5	0	29	1.17
57727--57778	20	2.6	20	100	0	104	36	11	26	25	1.90
60507--60577	21	3.4	21	96	0	124	32	18	22	26	1.97
64845--64881	2	19.5	2	89	10	60	51	0	0	48	1.00
64845--64881	19	1.9	19	94	0	65	51	0	0	48	1.00
65577--65614	18	2.1	19	85	5	51	28	2	0	68	1.03
68271--68311	20	2.1	20	90	4	66	68	2	0	29	1.03

Tables:   1

The End!