Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006647.1 Hibiscus syriacus cultivar Beakdansim tig00016386_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  170885

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1703--1748
20
2.3
20
84
0
65
36
17
10
34
1.85
9130--9161
16
2.0
16
93
0
55
34
6
25
34
1.81
13773--13805
16
2.1
16
100
0
66
15
30
24
30
1.95
35101--35141
8
5.2
8
82
5
57
34
0
29
36
1.58
35222--35581
128
2.8
128
96
0
650
21
24
21
33
1.97
36339--36424
33
2.7
30
80
8
91
59
2
0
38
1.10
36339--36415
33
2.4
33
82
6
95
61
1
0
37
1.05
39172--39216
7
6.7
7
89
5
58
73
0
17
8
1.08
46291--46324
17
1.9
17
88
5
50
55
2
8
32
1.45
54899--54935
19
1.9
19
94
0
65
40
10
2
45
1.53
60753--60949
21
9.2
21
73
16
120
30
25
20
23
1.99
60879--60935
28
2.0
28
86
0
78
33
24
21
21
1.97
60858--60955
49
2.0
49
91
0
160
29
25
21
23
1.99
60907--60955
21
2.3
21
89
0
80
28
28
20
22
1.98
60945--61032
21
4.2
21
77
12
83
26
22
18
32
1.97
60944--61032
42
2.2
40
80
10
108
26
22
17
32
1.97
61181--61356
21
8.4
21
83
8
216
23
22
25
28
1.99
65610--65635
12
2.2
12
100
0
52
42
34
0
23
1.54
68505--68602
35
2.8
34
66
15
92
51
6
9
33
1.59
69175--69207
14
2.2
16
89
10
52
39
0
3
57
1.14
73802--73848
24
2.0
22
84
8
58
48
0
4
46
1.21
87899--87966
27
2.6
27
95
4
122
41
16
11
30
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94408--94493
44
2.0
43
88
2
127
38
19
9
32
1.84
96407--96672
125
2.1
126
83
3
320
34
23
21
20
1.97
98459--98503
22
1.9
22
82
13
54
26
2
8
62
1.37
103363--103403
18
2.4
18
80
11
52
26
0
4
68
1.10
104955--104998
21
2.1
21
82
0
52
31
31
11
25
1.91
110358--110449
24
3.8
24
91
2
132
39
20
15
25
1.91
111423--111475
26
2.0
26
85
0
70
26
20
16
35
1.94
114998--115051
25
2.3
23
81
9
65
38
3
1
55
1.28
115393--115439
23
2.0
23
100
0
94
65
4
0
29
1.11
121552--121626
21
3.6
21
71
10
82
38
21
17
22
1.93
121527--121629
41
2.5
41
95
0
179
36
23
16
23
1.94
121528--121635
20
5.3
20
66
4
72
37
24
15
23
1.93
121979--122069
19
4.4
20
76
17
105
30
28
5
35
1.80
121990--122071
44
1.9
41
87
7
119
32
29
6
31
1.82
122093--122152
21
2.9
21
97
0
111
21
15
30
33
1.94
128303--128381
2
43.5
2
78
18
75
45
0
0
54
0.99
128313--128414
44
2.3
45
93
5
181
44
0
0
55
0.99
128315--128417
35
3.0
35
73
21
51
42
0
0
57
0.98
131698--131728
13
2.4
13
88
0
53
6
6
3
83
0.88
131925--131961
17
2.2
17
100
0
74
32
0
37
29
1.58
148192--148258
33
2.1
31
86
5
89
40
7
11
40
1.70
148519--148572
22
2.5
22
90
0
90
9
16
27
46
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
150436--150480
22
2.0
22
95
0
81
48
8
6
35
1.61
150594--150647
24
2.2
24
83
0
63
51
14
14
18
1.76
152095--152168
37
2.0
37
97
0
139
25
18
14
40
1.89
153693--153768
31
2.5
31
77
0
80
31
9
11
47
1.72
154827--154862
15
2.3
15
90
9
54
50
0
0
50
1.00
154858--154928
24
2.8
25
74
20
74
42
5
0
52
1.25
154911--154967
28
2.0
29
86
13
82
36
1
0
61
1.07
156176--156214
20
2.0
20
100
0
78
41
5
15
38
1.69
160629--160673
19
2.4
19
84
0
54
35
4
11
48
1.59
161485--161588
54
1.9
54
98
0
199
33
10
23
32
1.89
161501--161594
26
3.5
26
67
16
75
35
12
24
27
1.92
168166--168206
12
3.4
12
96
0
73
2
41
31
24
1.68
169807--169887
20
3.8
20
76
10
63
14
23
34
27
1.94

Tables:   1

The End!