genome.fa.s6648.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006648.1 Hibiscus syriacus cultivar Beakdansim tig00016395_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  145979

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4835--4886	5	10.2	5	80	12	61	5	21	53	19	1.65
4828--4865	17	2.2	17	100	0	76	10	23	47	18	1.79
4801--4838	7	5.6	7	90	6	51	23	23	31	21	1.98
7239--7295	21	2.8	21	89	2	80	21	19	29	29	1.97
9849--9907	21	2.8	21	94	0	100	28	20	18	32	1.96
10022--10079	21	2.8	21	84	2	82	22	17	27	32	1.96
11156--11245	16	5.7	16	75	12	87	46	28	12	12	1.77
11151--11259	32	3.4	32	81	7	123	48	27	12	11	1.75
11720--11775	26	2.2	25	80	3	67	50	0	0	50	1.00
12989--13163	77	2.3	77	100	0	350	38	12	9	39	1.75
22661--22698	15	2.5	15	87	8	51	57	10	26	5	1.53
29242--29383	76	1.9	75	86	4	205	40	13	25	20	1.89
31778--31990	42	5.2	42	79	9	183	29	19	20	30	1.97
31808--31990	42	4.4	42	80	8	203	28	18	21	31	1.97
31785--32042	82	3.1	83	82	5	274	31	19	18	30	1.96
31778--32046	41	6.5	42	77	7	198	30	20	19	30	1.97
32606--32632	2	13.5	2	100	0	54	48	0	0	51	1.00
34146--34197	27	2.0	25	85	7	68	36	3	11	48	1.58
38744--38795	27	2.0	25	85	7	68	36	3	11	48	1.58
40416--40538	31	4.0	31	92	2	194	36	22	20	20	1.95
41342--41386	21	2.1	21	87	0	63	15	24	28	31	1.96
43883--43932	19	2.5	20	80	12	57	44	22	0	34	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44836--44958	31	4.0	31	92	2	194	36	22	20	20	1.95
45763--45807	21	2.1	21	87	0	63	15	24	28	31	1.96
47728--47793	34	2.0	34	88	5	100	25	27	16	30	1.97
48016--48045	10	2.8	11	95	5	53	10	0	50	40	1.36
48151--48215	17	3.9	17	74	25	68	15	20	38	26	1.92
48152--48213	32	2.0	32	93	3	108	16	19	38	25	1.92
50542--50584	18	2.4	18	92	0	68	20	4	0	74	1.00
51466--51500	16	2.1	17	89	5	54	54	2	14	28	1.54
56501--56543	19	2.3	19	100	0	86	55	4	27	11	1.55
61861--62101	101	2.4	101	85	5	321	36	10	6	45	1.65
63257--63286	4	7.5	4	92	0	51	30	0	0	70	0.88
63257--63287	16	1.9	16	100	0	62	32	0	0	67	0.91
82369--82409	14	2.8	15	78	14	50	41	0	0	58	0.98
82371--82456	27	3.2	27	77	19	74	46	1	1	51	1.16
82371--82474	28	3.7	29	77	20	87	47	0	0	50	1.14
82532--82576	23	2.0	23	86	0	63	53	2	2	42	1.25
85222--85287	33	2.0	33	93	0	114	37	27	12	22	1.90
86549--86603	3	18.7	3	92	3	76	34	5	0	60	1.20
93471--93551	42	2.0	42	83	11	105	38	16	14	30	1.89
94908--95098	37	5.2	36	73	11	154	35	19	8	36	1.83
94908--95098	36	5.2	36	74	11	163	35	19	8	36	1.83
94908--95077	76	2.3	76	85	7	249	34	18	10	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95446--95510	20	3.3	20	64	12	53	43	12	23	21	1.86
95305--95779	264	1.8	263	88	1	736	38	14	20	26	1.91
95551--95916	140	2.6	140	85	1	484	39	14	19	26	1.90
96046--96098	3	18.0	3	92	3	90	33	1	0	64	1.05
98754--98842	29	3.1	29	86	3	135	23	23	8	43	1.82
98813--98967	81	1.9	81	82	0	193	29	21	13	36	1.91
99316--99493	94	1.9	94	92	0	302	24	23	10	42	1.85
99462--99515	20	2.7	20	97	0	99	20	29	11	38	1.87
99316--99493	47	3.8	47	87	0	257	24	23	10	42	1.85
99415--99561	67	2.2	66	88	1	222	22	23	12	41	1.87
99368--99608	113	2.1	114	89	2	360	22	23	12	41	1.87
99327--99622	160	1.8	161	87	5	438	23	21	11	42	1.86
99482--99622	46	3.0	46	88	8	214	22	19	14	43	1.87
109053--109144	28	3.2	28	85	1	121	25	25	8	41	1.83
109134--109375	80	3.0	80	87	3	306	28	22	11	37	1.89
109720--110183	47	10.1	47	84	6	587	21	21	13	44	1.86
109753--109823	20	2.9	27	64	27	75	22	16	14	46	1.83
109849--109924	35	2.2	35	92	0	125	25	18	13	43	1.86
109866--110113	20	11.2	20	66	26	112	20	22	12	43	1.86
109921--110149	27	9.5	26	65	25	139	19	22	13	44	1.86
112832--112990	72	2.2	75	88	3	234	40	6	3	48	1.48
120567--120635	20	3.5	20	97	0	129	33	21	20	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120970--121027	26	2.2	26	84	6	73	44	5	3	46	1.42
125368--125419	27	2.0	27	88	3	79	23	19	28	28	1.98
126302--126328	12	2.2	12	100	0	54	48	18	11	22	1.79
128308--128359	17	3.1	17	100	0	104	48	0	23	28	1.51
133781--133847	3	22.3	3	81	6	82	61	1	2	34	1.20
134032--134376	134	2.6	133	81	2	352	25	17	31	26	1.97
134399--134660	70	3.9	67	80	9	291	40	12	18	29	1.87
137195--137315	59	2.1	59	91	0	197	24	17	22	35	1.95
140302--140414	59	1.9	59	88	0	172	25	18	20	35	1.95
141681--141737	8	6.8	8	78	13	53	1	15	1	80	0.87
141682--141737	17	3.2	16	82	12	67	1	16	1	80	0.88

Tables:   1

The End!