Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000665.1 Hibiscus syriacus cultivar Beakdansim tig00001294_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59962

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5939--5993
28
2.0
28
88
0
83
29
14
21
34
1.93
6215--6258
20
2.2
21
84
8
56
59
6
0
34
1.24
10318--10342
2
12.5
2
100
0
50
52
0
0
48
1.00
19541--19583
21
2.0
21
86
8
61
39
0
0
60
0.97
24554--24579
13
2.0
13
100
0
52
46
7
46
0
1.31
24607--24686
15
5.4
15
75
8
74
46
2
11
40
1.53
24601--24686
45
1.9
44
83
6
111
48
2
10
38
1.50
24854--24894
14
3.0
14
80
16
50
41
0
0
58
0.98
24841--24876
18
1.9
20
88
11
58
41
0
0
58
0.98
24974--25037
23
2.7
23
82
4
74
40
3
4
51
1.38
25028--25086
28
2.1
28
87
6
84
54
1
0
44
1.10
25020--25116
30
3.3
30
77
19
82
52
2
1
44
1.19
25144--25192
21
2.3
20
80
13
53
53
0
0
46
1.00
25111--25181
27
2.6
27
77
8
81
52
1
1
45
1.18
25382--25500
42
2.8
42
92
0
193
47
17
17
17
1.84
25768--25857
20
4.4
21
71
12
62
40
18
21
20
1.92
25805--25882
41
1.9
41
89
0
120
39
20
16
23
1.92
25850--25902
20
2.7
20
90
0
70
28
26
18
26
1.98
26090--26133
22
2.0
22
100
0
88
18
45
18
18
1.86
26367--26440
20
3.8
20
78
8
80
13
17
22
45
1.83
27685--27717
14
2.4
14
100
0
66
9
12
24
54
1.66
27717--27772
20
2.9
19
77
15
69
17
25
21
35
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29349--29415
21
3.2
21
68
4
55
19
20
35
23
1.95
29349--29471
42
2.9
41
79
7
104
23
17
36
21
1.95
31473--31619
20
7.8
19
77
11
133
45
21
20
12
1.84
31620--31661
19
2.2
19
91
0
66
2
16
28
52
1.56
32259--32310
20
2.5
20
81
3
59
17
25
19
38
1.93
32341--32381
21
2.0
21
85
0
55
34
31
17
17
1.93
32639--32679
16
2.6
16
81
14
50
58
0
0
41
0.98
34270--34361
42
2.2
42
92
1
150
16
13
20
50
1.78
34575--34642
21
3.3
20
78
17
70
42
0
0
57
0.98
34576--34657
30
2.7
31
87
7
89
43
0
0
56
0.99
34586--34641
9
6.1
9
74
17
53
39
0
0
60
0.97
34586--34650
19
3.8
18
73
26
70
38
0
0
61
0.96
34562--34656
39
2.4
39
78
15
106
44
0
0
55
0.99
34602--34673
31
2.3
31
88
7
101
44
1
0
54
1.08
34709--34773
28
2.4
28
80
19
84
47
1
1
49
1.20
34728--34798
19
3.7
18
72
10
52
49
1
1
47
1.18
34793--34837
23
2.0
23
86
0
63
53
2
2
42
1.25
45770--45803
2
17.0
2
100
0
68
50
0
0
50
1.00
46157--46201
20
2.3
20
84
3
56
60
13
6
20
1.55
47826--47862
20
2.0
20
89
10
60
21
16
16
45
1.84
55917--55985
23
3.0
22
76
4
66
26
24
24
24
2.00
56690--56727
20
1.9
20
88
0
58
10
31
34
23
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56755--56797
21
2.0
21
90
0
68
16
23
27
32
1.96

Tables:   1

The End!