genome.fa.s6650.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006650.1 Hibiscus syriacus cultivar Beakdansim tig00016402_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76525

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1428--1463	18	1.9	19	88	5	56	38	27	0	33	1.57
1634--1690	17	3.3	18	87	7	82	29	49	0	21	1.50
3467--3512	24	2.0	23	91	4	74	15	10	26	47	1.78
3502--3550	19	2.6	19	100	0	98	6	14	36	42	1.70
4400--4440	17	2.3	19	87	8	59	36	4	4	53	1.44
4922--4977	26	2.2	26	96	0	103	44	3	16	35	1.65
19245--19323	40	2.0	41	85	7	108	34	20	11	34	1.88
19286--19356	20	3.5	20	77	7	70	33	22	9	33	1.87
19513--19558	22	2.1	22	95	0	83	28	15	30	26	1.96
19615--19674	22	2.9	20	76	9	66	28	8	26	36	1.85
19615--19678	21	3.1	20	82	8	83	26	7	26	39	1.83
19615--19690	21	3.6	21	77	11	75	27	7	26	38	1.84
24043--24083	21	2.0	21	90	0	64	29	31	0	39	1.57
33711--33787	27	2.8	27	78	2	82	7	15	5	71	1.27
34976--35064	46	1.9	47	90	2	144	30	15	13	40	1.86
35802--35830	15	1.9	15	100	0	58	34	3	13	48	1.60
41648--41695	19	2.6	20	87	9	59	29	18	27	25	1.98
41623--41759	64	2.2	63	80	7	152	32	17	23	26	1.96
41747--41802	20	2.5	23	86	11	73	30	21	23	25	1.99
42755--42850	31	3.1	31	91	5	158	20	21	25	32	1.98
45923--45960	20	1.9	20	94	0	67	28	23	23	23	1.99
46910--46974	31	2.1	31	97	0	121	18	21	27	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46960--47031	29	2.4	30	86	2	92	18	20	29	31	1.96
48967--49017	25	2.0	26	88	3	77	45	3	0	50	1.20
49763--49803	14	2.8	16	78	17	52	39	0	2	58	1.11
49967--50026	25	2.6	22	80	17	68	43	5	0	51	1.23
49971--50064	27	3.6	27	82	8	113	41	4	0	54	1.20
50026--50083	27	2.2	27	84	3	73	37	1	0	60	1.07
50818--50878	27	2.3	27	94	0	104	37	13	14	34	1.85
51346--51375	14	2.1	14	93	0	51	60	20	10	10	1.57
51334--51439	53	2.0	53	100	0	212	54	18	11	15	1.70
51399--51457	14	4.5	14	73	16	54	59	20	11	8	1.58
51407--51466	24	2.5	24	88	0	84	61	21	8	8	1.51
51439--51476	20	1.9	20	94	0	67	60	15	10	13	1.59
51674--51714	14	2.9	14	85	0	64	65	17	4	12	1.42
56767--56834	21	3.2	21	76	19	70	52	20	4	22	1.63
58587--58619	12	2.8	12	100	0	66	21	0	51	27	1.48
61336--61379	22	2.0	22	90	0	70	52	25	0	22	1.48
73835--74011	95	1.9	96	81	3	223	32	17	23	27	1.97
73835--74032	95	2.1	96	80	4	222	33	16	22	27	1.96
74363--74536	58	3.0	58	81	3	206	33	14	20	31	1.93
74384--74536	59	2.6	58	84	3	209	34	14	19	31	1.92
74908--75295	202	1.9	203	87	2	573	31	13	24	30	1.94
74906--75304	68	5.9	68	84	2	525	31	13	24	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75267--75810	81	6.7	81	89	2	772	35	11	25	27	1.91
76058--76091	13	2.5	14	90	4	52	58	0	26	14	1.36

Tables:   1

The End!