genome.fa.s6651.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006651.1 Hibiscus syriacus cultivar Beakdansim tig00016410_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122554

Tables:   1   

This is table  1  of  1  ( 100 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
537--594	28	2.2	26	93	6	98	29	0	13	56	1.38
1093--1137	21	2.2	21	84	4	56	48	8	6	35	1.61
4073--4594	60	9.1	59	81	13	630	41	0	12	46	1.41
4070--4210	21	7.0	21	63	19	68	40	0	14	45	1.45
4185--4724	49	10.3	44	74	21	152	41	0	11	46	1.40
4134--4857	109	6.6	108	81	12	849	41	0	11	46	1.41
4194--4900	60	13.3	49	78	18	664	41	0	11	46	1.40
4292--4318	10	2.7	10	100	0	54	40	0	18	40	1.51
4531--4900	96	3.7	97	81	17	443	41	0	12	46	1.41
4722--4751	10	3.0	10	90	0	51	46	0	13	40	1.43
4830--4919	14	6.6	14	74	16	82	37	0	14	47	1.44
4872--4920	25	2.0	25	95	0	89	36	0	16	46	1.47
7458--7498	22	1.9	21	85	5	55	53	19	0	26	1.45
7596--7642	14	3.5	13	77	11	51	2	40	0	57	1.11
7641--7698	26	2.3	26	90	3	91	6	36	8	48	1.61
7948--8036	29	3.1	29	86	3	117	13	22	40	23	1.89
8137--8220	29	2.9	29	89	0	114	25	32	27	15	1.95
16709--16761	22	2.4	22	93	0	88	9	24	22	43	1.83
17832--17879	2	24.0	2	100	0	96	50	0	0	50	1.00
18684--18735	26	2.0	26	92	0	86	9	28	21	40	1.84
22069--22114	24	1.9	24	82	8	58	23	10	26	39	1.88
31292--31356	5	12.8	5	77	9	69	4	18	53	23	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31285--31332	22	2.2	22	96	0	87	10	22	47	18	1.79
31314--31358	14	3.1	14	83	6	54	4	15	55	24	1.59
31353--31411	9	6.3	9	78	7	64	27	28	28	15	1.96
31355--31412	19	3.1	19	90	5	91	27	29	25	17	1.97
38956--39113	21	7.8	20	72	7	86	38	25	17	18	1.92
39080--39273	20	9.7	20	84	2	210	35	25	20	19	1.95
39654--39724	33	2.2	33	89	0	106	11	23	16	47	1.79
39797--39913	41	3.1	38	79	14	136	45	17	25	11	1.82
39804--39879	21	3.7	21	85	3	109	44	18	25	11	1.83
39864--39920	14	3.7	14	75	20	60	43	22	24	8	1.81
39856--39936	33	2.5	33	93	0	135	45	23	22	8	1.79
41683--42152	92	5.1	93	97	1	894	22	12	19	45	1.83
41683--42152	185	2.6	185	97	1	892	22	12	19	45	1.83
42196--42324	19	7.3	19	75	17	125	45	28	17	8	1.77
42232--42324	33	2.8	32	91	4	150	46	27	18	7	1.76
42196--42324	52	2.5	52	74	14	140	45	28	17	8	1.77
42320--42454	19	7.6	19	75	16	128	11	19	23	45	1.82
42342--42398	14	3.7	14	77	20	60	10	21	22	45	1.82
42325--42417	33	2.8	33	95	0	168	10	20	21	47	1.80
44378--44413	14	2.6	14	95	0	63	33	0	22	44	1.53
44520--44619	19	5.5	19	84	12	147	45	17	23	15	1.85
44520--44636	53	2.2	53	95	1	209	43	17	24	14	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44626--44774	19	8.6	19	73	21	139	16	22	17	43	1.87
44626--44742	52	2.2	52	95	0	207	16	21	17	44	1.87
44681--44774	33	2.8	33	95	1	170	14	24	17	43	1.86
44833--44930	19	5.4	19	84	13	143	45	17	22	14	1.84
44833--44949	53	2.2	53	98	1	227	44	17	23	13	1.85
47265--47289	12	2.1	12	100	0	50	0	28	0	72	0.86
47464--47510	24	2.0	24	87	8	69	38	21	14	25	1.92
48190--48439	20	12.5	20	84	3	261	19	18	24	37	1.94
48426--48508	21	4.0	21	73	6	78	25	16	24	33	1.96
48406--48504	42	2.4	43	77	11	100	21	18	23	37	1.94
52515--52574	16	3.8	16	90	0	75	23	25	10	41	1.85
52510--52578	32	2.2	32	86	2	95	21	26	11	40	1.87
52768--52837	22	3.0	22	76	14	68	57	1	1	40	1.17
52855--52896	14	3.3	14	75	25	56	47	0	0	52	1.00
52847--52918	24	3.1	24	82	9	89	56	0	0	43	0.99
57017--57161	61	2.4	61	82	6	188	35	9	4	50	1.54
57213--57326	33	3.7	33	75	17	145	42	7	7	42	1.59
57268--57408	18	8.2	18	74	15	118	42	7	7	43	1.59
57216--57376	51	2.9	55	87	10	249	42	6	6	44	1.56
57262--57393	51	2.6	51	91	1	174	42	7	6	43	1.59
57476--57629	2	71.0	2	66	19	51	46	5	7	40	1.53
57476--57548	20	3.6	19	78	9	74	49	4	5	41	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57553--57626	22	3.2	22	69	14	67	45	5	6	41	1.53
57642--57722	18	4.4	18	77	11	83	45	4	7	41	1.53
57780--57838	31	1.9	32	86	6	86	42	3	6	47	1.46
57903--58012	2	54.5	2	70	15	66	44	4	1	49	1.33
57886--57937	26	2.0	26	88	0	77	38	3	5	51	1.44
57931--57997	20	3.2	20	80	15	91	44	5	2	46	1.43
57931--58012	42	1.9	44	92	5	141	45	4	2	47	1.37
57903--58009	20	5.4	20	70	15	80	44	4	1	48	1.34
58270--58305	19	1.9	19	88	5	56	33	5	13	47	1.67
58052--58854	209	3.8	211	88	3	1134	30	10	8	50	1.66
58052--58854	215	3.8	213	88	4	1142	30	10	8	50	1.66
60746--60823	8	10.1	8	71	15	58	62	2	0	34	1.09
60745--60823	24	3.4	24	76	13	67	62	2	0	35	1.09
60946--61018	35	2.1	34	89	2	110	58	4	0	36	1.17
61260--61303	21	2.1	21	87	8	63	40	0	0	59	0.98
61271--61320	15	3.4	15	72	22	52	36	0	2	62	1.07
62378--62436	24	2.5	25	79	15	63	55	1	5	37	1.32
68895--68927	16	1.9	18	88	11	52	45	0	12	42	1.41
69222--69289	23	3.0	22	79	12	75	42	1	1	54	1.18
70162--70189	2	14.0	2	100	0	56	50	0	0	50	1.00
70743--71448	122	5.9	123	84	4	841	26	19	15	38	1.91
71118--71463	112	3.0	112	77	9	397	27	19	15	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71487--71686	36	5.5	36	73	4	186	39	13	17	30	1.87
71463--71689	73	3.1	73	92	1	357	37	12	17	32	1.87
72403--72501	22	4.5	22	96	0	180	37	12	17	33	1.86
72873--73021	54	2.8	54	85	0	190	24	19	16	40	1.91
77732--77789	20	2.6	22	86	10	75	31	18	22	27	1.97
78719--78765	8	5.8	8	78	14	51	31	14	31	21	1.94
78723--78771	17	2.9	17	81	3	55	32	16	30	20	1.94
78758--78886	43	3.0	44	87	4	183	24	17	24	33	1.96
93970--94088	60	2.0	60	84	0	157	30	12	27	29	1.93
102819--102860	19	2.3	18	80	15	50	26	28	7	38	1.82
105872--105910	18	2.2	18	95	0	69	15	20	41	23	1.90
111062--111086	13	1.9	13	100	0	50	64	0	0	36	0.94

Tables:   1

The End!