Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006652.1 Hibiscus syriacus cultivar Beakdansim tig00016422_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100341

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3998--4046
21
2.3
21
85
0
62
46
10
22
20
1.80
9463--9511
20
2.5
20
89
0
80
28
12
18
40
1.86
26829--26953
49
2.6
49
98
0
241
37
28
17
16
1.91
32967--33035
33
2.1
32
86
7
95
0
11
10
78
0.97
32967--33035
11
6.4
11
77
8
70
0
11
10
78
0.97
36932--37064
42
3.2
41
80
4
151
42
19
9
28
1.81
49599--49630
2
16.0
2
100
0
64
50
0
0
50
1.00
51677--51706
14
2.1
15
93
6
53
40
0
0
60
0.97
51705--51775
3
23.7
3
91
0
115
61
0
2
35
1.10
52091--52649
116
4.9
117
89
4
838
29
20
13
37
1.90
52092--52654
229
2.4
229
92
2
896
29
20
13
37
1.90
53430--53629
83
2.4
83
95
0
364
35
21
13
30
1.91
67335--67364
2
15.0
2
100
0
60
50
0
0
50
1.00
69283--69316
12
2.8
12
100
0
68
44
32
8
14
1.76
69396--69457
3
21.7
3
83
9
85
62
0
1
35
1.05
71406--71462
23
2.6
22
79
15
66
28
15
26
29
1.96
79464--80282
137
6.0
137
82
3
907
28
16
27
26
1.97
79464--80282
271
3.0
272
82
3
948
28
16
27
26
1.97
79464--80282
408
2.0
409
84
4
1060
28
16
27
26
1.97
80286--80416
66
2.0
66
87
3
192
39
12
16
30
1.87
80753--80821
37
2.0
33
83
16
86
36
11
17
34
1.86
82629--82656
14
2.0
14
100
0
56
64
0
28
7
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83204--83256
26
2.0
26
96
0
97
28
20
11
39
1.87
83423--83477
22
2.5
21
80
8
65
14
25
0
60
1.35
83607--83678
2
36.0
2
100
0
144
50
50
0
0
1.00
85094--85137
21
2.0
21
82
4
52
25
29
25
20
1.99
86354--86403
24
2.1
24
85
7
66
58
12
2
28
1.45
87627--87687
31
2.0
31
83
6
79
39
19
13
27
1.89
88453--89073
137
4.5
137
83
3
770
28
17
28
26
1.97
88454--89073
271
2.3
271
84
3
816
28
16
28
26
1.97
89075--89199
66
1.9
66
91
0
205
39
13
17
29
1.88
92534--92767
79
3.0
79
87
3
312
35
11
23
29
1.90
92701--92951
45
5.6
45
80
4
193
38
9
20
31
1.85
92740--92978
45
5.3
44
81
5
246
41
8
18
31
1.80
93629--93679
2
25.5
2
100
0
102
50
0
0
49
1.00
93707--93796
44
2.0
46
82
10
114
45
6
20
27
1.75
97472--97645
95
1.8
95
83
4
235
31
12
25
30
1.93
97472--97675
95
2.1
94
81
8
227
31
14
25
29
1.94
97910--98048
45
3.3
44
66
25
129
34
11
23
30
1.90
98063--98318
45
5.7
46
81
4
281
38
10
21
29
1.87
97895--98099
79
2.6
79
93
0
356
37
11
22
28
1.89
98995--99034
2
20.5
2
94
5
73
52
0
0
47
1.00

Tables:   1

The End!