Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006653.1 Hibiscus syriacus cultivar Beakdansim tig00016424_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105476

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1011--1044
16
2.1
17
88
5
52
64
0
0
35
0.94
7508--7574
6
11.2
6
90
0
89
31
46
16
5
1.71
13291--13369
6
13.2
6
95
0
122
31
48
16
3
1.64
19628--19702
2
37.5
2
100
0
150
50
0
0
49
1.00
19862--19925
2
32.0
2
100
0
128
50
0
0
50
1.00
22534--22560
12
2.2
12
100
0
54
33
25
25
14
1.95
23357--23472
60
1.9
60
82
6
146
37
9
4
49
1.55
34724--34767
18
2.4
18
96
0
79
4
38
43
13
1.65
35707--35784
32
2.4
32
93
2
129
34
28
11
25
1.91
35707--35794
32
2.7
32
89
1
104
32
30
10
26
1.89
38367--38433
34
1.9
34
82
14
84
47
19
11
20
1.81
38601--38688
32
2.7
32
76
1
95
32
25
13
28
1.94
39132--39157
3
8.7
3
100
0
52
0
65
0
34
0.93
39335--39412
38
2.1
38
95
0
138
33
5
17
43
1.72
41052--41214
82
2.0
82
89
6
249
38
4
11
44
1.62
45920--45959
19
2.1
19
85
0
53
50
17
5
27
1.67
47805--47860
18
3.1
18
92
0
76
7
25
26
41
1.81
49434--49519
23
4.0
21
72
15
68
18
27
30
23
1.98
49440--49516
23
3.4
23
79
10
79
18
25
33
22
1.96
54584--54807
113
2.0
111
93
1
385
32
9
29
28
1.88
55833--55872
19
2.1
19
100
0
80
42
17
0
40
1.49
55863--55897
12
3.0
12
95
4
63
57
25
0
17
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56992--57048
3
18.3
3
89
3
78
40
0
0
59
0.97
63878--63910
8
4.2
8
92
7
59
87
12
0
0
0.53
63878--63910
15
2.2
15
100
0
66
87
12
0
0
0.53
69125--69197
22
3.3
22
72
0
65
38
12
12
36
1.81
69876--70624
76
9.9
76
98
0
1446
22
20
20
35
1.96
70581--70655
31
2.4
31
97
0
141
26
17
18
37
1.93
70505--70731
107
2.1
107
99
0
445
23
19
20
36
1.95
70354--70894
259
2.1
259
96
1
1005
23
20
20
35
1.96
70612--71004
76
5.1
77
94
1
666
23
20
20
35
1.96
71135--71187
3
17.3
3
84
7
63
41
0
0
58
0.98
82750--82915
83
2.0
83
88
2
244
42
4
9
43
1.57
91510--91572
24
2.7
24
82
2
83
30
23
23
22
1.99
91585--91632
23
2.1
23
96
0
87
35
20
22
20
1.96
94415--94528
54
2.1
54
93
0
192
35
8
11
43
1.72
94574--94621
21
2.3
21
88
0
69
41
0
2
56
1.11
94568--94614
18
2.7
18
73
3
51
40
0
2
57
1.11

Tables:   1

The End!