Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006654.1 Hibiscus syriacus cultivar Beakdansim tig00016426_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60734

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1856--1939
3
28.7
3
88
9
129
34
1
0
64
1.02
2651--2735
43
2.0
43
100
0
170
32
20
18
28
1.96
4169--4206
15
2.8
13
88
11
51
23
5
2
68
1.23
14806--14864
16
3.5
16
78
17
66
79
0
16
3
0.86
14806--14865
15
4.0
14
79
18
59
78
0
18
3
0.89
15190--15235
19
2.6
18
83
10
60
32
6
8
52
1.58
15887--16437
83
6.7
84
92
4
881
27
13
22
36
1.91
15887--16437
165
3.3
165
94
1
946
27
13
22
36
1.91
15887--16437
248
2.2
248
91
3
889
27
13
22
36
1.91
17100--17831
116
6.4
116
93
3
1121
36
13
20
28
1.91
17967--18040
3
24.7
3
97
0
139
33
1
0
64
1.02
18514--18539
7
3.7
7
100
0
52
46
11
42
0
1.40
18776--18867
45
2.0
45
100
0
184
32
22
18
26
1.97
19506--19544
14
2.6
15
88
11
62
17
0
5
76
0.96
21911--21993
3
27.7
3
87
0
85
40
3
0
55
1.17
21989--22027
9
3.8
10
84
15
53
56
2
0
41
1.13
24092--24130
15
2.9
13
88
11
53
23
7
2
66
1.30
34732--34810
7
10.4
7
83
15
79
84
0
15
0
0.61
34735--34809
1
75.0
1
72
0
60
86
0
13
0
0.57
34735--34809
8
9.6
8
83
13
95
86
0
13
0
0.57
34735--34809
17
4.8
16
79
17
95
86
0
13
0
0.57
35947--36463
83
6.2
83
95
0
903
27
11
23
36
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37257--37815
114
4.9
113
95
1
825
37
13
19
28
1.90
38137--38191
3
18.3
3
92
0
65
41
0
1
56
1.10
43059--43101
21
2.0
22
86
13
63
53
2
2
41
1.26
44107--44141
15
2.4
14
90
9
52
31
0
37
31
1.58
44122--44186
30
2.2
30
91
0
103
36
1
32
29
1.67
45761--45789
2
14.5
2
100
0
58
48
0
0
51
1.00
48973--49014
21
2.0
21
90
0
66
28
28
28
14
1.95
48996--49125
42
3.1
42
86
3
181
31
27
11
29
1.92
51151--51194
14
3.1
15
80
9
56
63
0
2
34
1.07
51197--51242
20
2.3
20
82
10
60
65
0
0
34
0.93
51910--51935
6
4.3
6
100
0
52
69
15
15
0
1.20
53734--53786
2
26.5
2
100
0
106
50
0
0
49
1.00
55029--55057
2
14.5
2
100
0
58
48
0
0
51
1.00
55840--55967
60
2.1
60
81
4
141
35
15
14
34
1.89
56564--57026
5
93.6
5
83
15
504
40
0
1
57
1.12
57990--58059
12
5.8
12
80
6
79
52
18
14
14
1.74
57990--58059
24
2.9
24
83
8
97
52
18
14
14
1.74
57995--58082
24
3.7
23
80
6
86
50
18
13
18
1.79
57988--58096
48
2.3
48
83
3
130
49
17
15
17
1.80
58019--58096
24
3.2
25
77
10
65
46
17
17
17
1.85
60148--60180
17
1.9
17
93
0
57
30
30
24
15
1.95
60242--60284
22
2.0
22
85
0
59
46
23
2
27
1.64

Tables:   1

The End!