Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006655.1 Hibiscus syriacus cultivar Beakdansim tig00016430_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  456786

Tables:   1   2   3   

This is table  3  of  3  ( 283 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
376315--376370
27
2.0
27
82
3
67
30
25
7
37
1.82
377781--377806
11
2.4
11
100
0
52
46
0
0
53
1.00
379325--379358
10
3.4
10
95
0
59
58
17
0
23
1.38
380065--380129
28
2.2
30
83
5
80
36
6
3
53
1.41
380573--380615
2
21.5
2
100
0
86
48
0
0
51
1.00
380678--380708
2
15.5
2
100
0
62
48
0
0
51
1.00
382331--382436
42
2.5
42
100
0
212
49
19
8
22
1.75
382357--382425
23
3.2
23
65
23
67
46
18
11
23
1.82
382338--382402
19
3.2
19
65
23
51
52
20
6
21
1.68
385327--385369
22
1.9
22
85
4
59
39
0
2
58
1.11
385325--385374
22
2.3
22
79
6
57
38
0
2
60
1.09
395845--395870
11
2.4
11
100
0
52
46
0
0
53
1.00
396340--396382
17
2.6
17
80
20
56
58
0
2
39
1.11
398442--398547
48
2.4
45
89
9
155
47
20
7
24
1.76
403778--403836
20
2.9
21
85
7
86
18
27
23
30
1.98
403799--403868
10
7.3
10
72
24
62
15
30
28
25
1.96
403799--403866
19
3.5
20
88
9
90
16
27
29
26
1.97
403829--403868
9
4.3
9
84
6
53
15
30
30
25
1.95
403870--403907
17
2.2
17
95
0
67
18
44
23
13
1.85
403854--403914
24
2.6
22
79
10
68
16
40
24
18
1.90
411088--411165
20
4.0
20
81
8
81
19
26
24
29
1.98
411108--411178
29
2.4
29
86
4
90
16
29
28
25
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
411109--411178
10
7.3
9
78
10
68
15
30
28
25
1.96
411109--411176
19
3.5
20
88
9
90
16
27
29
26
1.97
411180--411217
17
2.2
17
95
0
67
18
44
23
13
1.85
411164--411224
24
2.6
22
79
10
68
16
40
24
18
1.90
421277--421393
60
2.0
60
82
3
146
41
4
20
33
1.72
421846--421880
2
17.5
2
100
0
70
51
0
0
48
1.00
422349--422443
49
1.9
49
86
0
136
13
29
37
18
1.90
423966--423991
11
2.4
11
100
0
52
46
0
0
53
1.00
425075--425142
35
1.9
35
90
0
109
47
17
14
20
1.83
425075--425162
35
2.5
35
85
3
106
45
18
15
20
1.85
426859--426902
2
21.5
2
95
4
79
50
2
0
47
1.13
429884--429951
35
1.9
35
90
0
109
47
17
14
20
1.83
429884--429971
35
2.5
35
85
3
106
45
18
15
20
1.85
437030--437084
24
2.3
24
100
0
110
47
3
7
41
1.49
441091--441183
31
3.1
31
67
14
77
38
18
6
36
1.76
441085--441272
60
3.2
59
81
6
200
35
22
6
35
1.80
441392--441562
60
2.8
60
79
10
179
45
5
16
32
1.69
441665--441701
2
18.5
2
100
0
74
48
0
0
51
1.00
449846--449883
2
18.0
2
89
10
58
47
5
0
47
1.24
452803--452878
35
2.2
35
87
0
107
42
17
21
19
1.90
454540--454609
36
1.9
36
85
5
97
50
20
5
24
1.70

Tables:   1   2   3

The End!