genome.fa.s6657.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006657.1 Hibiscus syriacus cultivar Beakdansim tig00016433_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126753

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21--136	35	3.3	36	83	9	141	43	19	4	31	1.71
567--644	24	3.3	25	84	14	119	23	17	25	33	1.96
3435--3466	15	2.1	15	94	0	55	6	25	15	53	1.65
4212--4247	16	2.2	17	90	5	56	44	22	0	33	1.53
4651--4755	35	2.9	37	84	6	110	44	16	4	34	1.68
4651--4769	37	3.3	36	83	8	136	43	16	5	34	1.70
16997--17036	10	4.0	10	84	12	55	32	27	0	40	1.57
17161--17381	110	2.0	111	94	0	390	36	9	9	44	1.70
19807--19884	11	7.4	11	70	13	56	53	3	1	41	1.27
19807--19909	31	3.3	31	83	4	118	51	4	1	41	1.34
19908--19952	22	2.0	22	87	8	65	44	0	2	53	1.13
19928--19990	19	3.4	19	74	10	58	44	0	1	53	1.10
21171--21225	26	2.1	26	100	0	110	23	10	16	49	1.77
26299--26346	17	3.0	15	77	14	51	56	27	2	14	1.50
35134--35217	23	3.7	23	88	0	114	28	21	25	25	1.99
37841--38004	60	2.8	60	83	6	199	40	3	22	32	1.71
39798--39866	35	2.0	35	91	0	111	42	5	11	40	1.65
43305--43444	73	1.9	73	97	0	262	36	19	12	31	1.89
51447--51551	37	2.8	37	85	4	140	41	14	15	28	1.86
51908--51950	18	2.5	17	85	7	61	25	4	2	67	1.22
52241--52265	11	2.3	11	100	0	50	36	0	0	64	0.94
56521--57057	183	2.9	183	95	0	959	27	21	21	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58186--58299	36	3.2	34	73	9	95	25	15	14	44	1.84
58170--58331	72	2.2	76	86	8	228	27	18	12	40	1.87
58209--58366	72	2.2	72	82	8	178	27	16	15	40	1.89
58360--58495	39	3.2	39	65	25	103	27	21	13	37	1.91
58415--58732	104	3.1	104	93	1	516	31	20	11	36	1.89
58632--58707	36	2.1	36	92	0	125	23	21	14	40	1.90
58923--59534	105	5.9	105	91	2	903	33	26	18	21	1.96
60501--60543	18	2.5	17	85	7	61	25	4	2	67	1.22
60826--60877	20	2.6	20	96	0	95	7	25	23	44	1.79
61067--61110	2	22.0	2	100	0	88	50	0	0	50	1.00
61180--61231	9	5.8	9	76	17	54	15	5	1	76	1.05
61183--61234	27	1.9	27	84	0	68	13	9	1	75	1.14
68294--68356	22	2.9	22	95	2	110	30	23	20	25	1.99
68530--68573	20	2.2	20	95	0	79	36	40	11	11	1.77
69205--69347	60	2.4	59	79	8	146	34	16	4	44	1.67
69508--69624	60	2.0	59	86	1	162	39	4	25	30	1.75
74763--74902	73	1.9	73	97	0	262	31	12	19	36	1.89
84553--84662	18	6.2	18	70	14	61	66	0	5	27	1.19
84690--84731	10	4.4	10	85	11	61	45	16	0	38	1.48
84688--84769	4	20.8	4	72	7	51	48	10	2	37	1.52
84695--84750	18	3.1	18	86	0	76	48	14	0	37	1.44
84736--84784	25	2.0	25	84	8	64	59	0	4	36	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84761--84845	20	4.4	18	77	14	71	65	0	3	30	1.09
86185--86666	106	4.6	106	84	4	575	21	18	24	35	1.95
87313--87511	67	3.0	67	85	5	244	37	9	21	31	1.85
87415--87638	123	1.8	123	87	0	331	40	11	19	29	1.86
87590--87868	36	8.1	36	71	15	212	36	11	20	30	1.89
87511--87862	102	3.5	100	85	3	384	38	12	19	29	1.89
87695--87868	37	4.9	37	73	13	152	37	13	20	28	1.91
87594--87868	102	2.7	102	91	0	426	36	12	20	30	1.89
89280--89417	69	2.0	69	94	0	240	23	15	23	36	1.93
89490--89550	12	4.8	13	79	15	65	1	21	3	73	1.06
89489--89550	26	2.4	27	86	7	85	3	20	3	72	1.13
91111--91208	28	3.8	27	73	22	102	67	0	2	30	1.02
91102--91228	44	3.0	42	84	11	159	66	0	2	30	1.04
91131--91228	42	2.3	42	91	3	153	64	0	2	33	1.05
91265--91336	14	5.0	14	79	15	58	55	1	2	40	1.23
91282--91332	25	2.0	27	84	7	70	56	0	3	39	1.18
91255--91317	2	32.0	2	79	9	67	49	4	3	42	1.39
91312--91339	14	2.0	14	100	0	56	64	0	0	35	0.94
91317--91385	22	3.2	20	73	16	66	69	0	4	26	1.07
91825--91877	23	2.3	23	96	0	97	5	9	35	49	1.59
95563--95595	3	11.0	3	100	0	66	33	0	0	66	0.92
97088--97227	73	1.9	73	97	0	262	31	12	19	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98300--98336	6	6.2	6	100	0	74	32	0	16	51	1.45
104649--104721	20	3.7	20	81	1	76	36	10	17	34	1.85
109280--109307	2	14.0	2	100	0	56	50	0	0	50	1.00
121059--121109	26	2.0	26	84	7	68	37	3	23	35	1.74

Tables:   1

The End!