Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006658.1 Hibiscus syriacus cultivar Beakdansim tig00016474_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63723

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
134--175
14
2.9
15
82
7
59
73
0
2
23
0.94
133--180
16
2.8
18
74
22
50
72
0
4
22
1.01
1916--1945
15
1.9
16
93
6
53
43
6
13
36
1.70
12143--12244
30
3.4
29
71
14
100
41
11
12
34
1.80
12140--12265
59
2.1
60
95
1
227
39
11
13
34
1.81
12296--12377
28
3.0
28
66
13
64
36
2
3
57
1.30
16290--16327
19
2.0
20
89
5
60
55
2
0
42
1.14
21192--21236
23
2.0
23
95
0
81
20
24
26
28
1.99
27965--28021
23
2.5
23
88
0
78
19
28
24
28
1.98
31200--31243
15
2.9
15
89
0
70
11
65
15
6
1.44
40988--42146
229
5.1
229
96
2
2022
31
17
22
28
1.97
48835--48898
19
3.3
19
81
16
78
28
28
28
15
1.96
48843--48899
9
5.9
9
76
13
51
28
26
28
17
1.98
52284--52323
17
2.4
16
84
8
62
70
0
10
20
1.16
54451--54509
3
19.7
3
83
13
77
67
1
0
30
1.00
54446--54509
24
2.8
22
84
13
85
68
3
0
28
1.04
55171--55277
36
2.9
38
76
8
112
38
11
13
37
1.80
55142--55277
74
1.9
70
83
8
175
38
11
14
34
1.83
55422--55495
31
2.4
30
84
8
87
40
12
16
31
1.85
55527--55600
30
2.5
29
78
6
76
44
13
21
20
1.85
55802--55882
31
2.6
32
78
7
94
37
13
18
30
1.90
55866--55991
36
3.5
35
79
9
103
38
11
16
32
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55898--55991
36
2.6
36
86
0
134
40
12
15
30
1.85
56012--56217
106
2.0
105
80
8
240
38
11
16
33
1.85
56175--56453
153
1.8
154
84
0
389
39
10
17
32
1.84
56741--56786
4
12.0
4
81
9
60
28
0
21
50
1.49
56735--56797
16
3.8
17
79
10
76
25
1
23
49
1.59
56920--56975
22
2.4
25
88
11
91
17
37
8
35
1.82
58005--58087
14
5.9
13
72
17
51
1
15
7
75
1.07
58007--58053
23
2.0
24
84
12
62
0
14
6
78
0.93
59366--59408
13
3.2
13
78
18
52
51
11
20
16
1.75

Tables:   1

The End!